View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7545_low_2 (Length: 370)
Name: NF7545_low_2
Description: NF7545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7545_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 8 - 334
Target Start/End: Complemental strand, 34875850 - 34875524
Alignment:
| Q |
8 |
gatggacatcagctctggcagctccaagatgttcctggggttcatcaacttgtgtggatttctaacttcatctccttccttttcctgtatcctgcaacct |
107 |
Q |
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| T |
34875850 |
gatggacttcagctctggcagctccaagatgttcctggggttcatcaacttgtgtggatttctaacttcatctccttccttttcctgtatcctgcaacct |
34875751 |
T |
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| Q |
108 |
ttaatcttttagaggttgcagcagttgacaagcctaagttacatctctatgaaactggaattatgagaataaccaggcatccacaggtatacacaaatcc |
207 |
Q |
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| T |
34875750 |
ttaatcttttagaggttgcagcagttgacaagcctaagttacatctctatgaaactggaattatgagaataaccaggcatccacaggtatactcaaatcc |
34875651 |
T |
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| Q |
208 |
aaataattgcatagatcaaaaaataaagtaagacactgatgaatttggggcttttatgattttgatgatcatggtaacttggacaagtagtaatcacata |
307 |
Q |
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| T |
34875650 |
aaataattgcatagatcaaaaaataaagtaagacactgatgaatttggggcttttatgattttgatgatcatggtaacttggacaagtagtaatcacata |
34875551 |
T |
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| Q |
308 |
ttgtcaactttgtgaatcaaggttctc |
334 |
Q |
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| T |
34875550 |
ttgtcaactttgtgaatcaaggttctc |
34875524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 54 - 333
Target Start/End: Complemental strand, 34868561 - 34868277
Alignment:
| Q |
54 |
aacttgtgtggatttctaacttcatctccttccttttcctgtatcctgcaacctttaatcttttagaggttgcagcagttgacaagcctaagttacatct |
153 |
Q |
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| T |
34868561 |
aacttgtgtggctttctaacttcatctccttcttgttgttgtatccttcaacctttaatgttttagaggttgcagcagttgacaagcttatattacatct |
34868462 |
T |
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| Q |
154 |
ctatgaaactggaattatgagaataaccaggcatccacaggtat-acacaaatccaaataattgcatagatcaaaaaataaa---gtaagacactgatga |
249 |
Q |
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| T |
34868461 |
ctatgaaactgaaattatgagaacatccagacatccaatggtttcaaacaaatccaaacaattgcatatatcaaaaatagaacatgtaagacaccgatgc |
34868362 |
T |
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| Q |
250 |
atttggggct-tttatgattttgatgatcatggtaacttggacaagtagtaatcacatattgtcaactttgtgaatcaaggttct |
333 |
Q |
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||||||| | |||||||||||||||||| ||| |||||||||| |||||||||| ||||||||| ||||| || |||| |||| |
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| T |
34868361 |
atttgggtttctttatgattttgatgatcttggcaacttggacagatagtaatcacttattgtcaaatttgtaaaccaagtttct |
34868277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 320
Target Start/End: Complemental strand, 34871808 - 34871732
Alignment:
| Q |
244 |
tgatgaatttggggcttttatgattttgatgatcatggtaacttggacaagtagtaatcacatattgtcaactttgt |
320 |
Q |
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| T |
34871808 |
tgatgtatttgaggtttttgtgattttgatgatcttggtaacttggacaaatagtaatcagatattatcaaatttgt |
34871732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 48 - 197
Target Start/End: Original strand, 38381482 - 38381631
Alignment:
| Q |
48 |
ttcatcaacttgtgtggatttctaacttcatctccttccttttcctgtatcctgcaacctttaatcttttagaggttgcagcagttgacaagcctaagtt |
147 |
Q |
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||||||||||| ||||| |||| || |||||||| ||| ||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
38381482 |
ttcatcaacttctgtggctttccaatttcatctctttctttttcctatatccttcaacctttaatcttttagaaattgcagcagttgacaagcctaaaat |
38381581 |
T |
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| Q |
148 |
acatctctatgaaactggaattatgagaataaccaggcatccacaggtat |
197 |
Q |
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| T |
38381582 |
acatctatatgaaactggcatcataagaataaccaggcatccacaggtat |
38381631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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