View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7545_low_3 (Length: 332)
Name: NF7545_low_3
Description: NF7545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7545_low_3 |
 | |
|
| [»] chr4 (5 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 33750736 - 33751055
Alignment:
| Q |
13 |
aatatggattgtgatttttgggataggcttggggaaactgattttcaacaactgatgaggtttatggattttggtggagattcttctgattccagaactg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33750736 |
aatatggattgtgatttttgggataggcttggggaaactgattttcaacaactgatgaggtttatggattttggtggagattcttctgattccagaactg |
33750835 |
T |
|
| Q |
113 |
ggaacacttttaattagttcctgaactcaacaacaatggaacagttacttgtgtaaattagtgcgtgtttgaccgaggttaaggtattgattagcttcgc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33750836 |
ggaacacttttaattagttcctgaactcaacaacaatggaacagttacttgtgtaaattagtgcgtgtttgaccgaggttaaggtattgattagcttcgc |
33750935 |
T |
|
| Q |
213 |
tttgcaacaatgtgcataatctttcttccactagattttttcggaggaggaagttgccttgccagctgcaagtgcaaatcgtgatttcaatttttgtttt |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33750936 |
tttgcaacaatgtgcataatctttcttccactagattttttcggaggaggaagttaccatgccagctgcaagtgcaaatcgtgatttcaatttttgtttt |
33751035 |
T |
|
| Q |
313 |
tgcagaagaatctgctatgt |
332 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
33751036 |
tgcagaagaatctgctatgt |
33751055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 33719254 - 33719398
Alignment:
| Q |
13 |
aatatggattgtgatttttgggataggcttggggaaactgattttcaacaactgatgaggtttatggattttggtggagattcttctgattccagaactg |
112 |
Q |
| |
|
|||| |||||||||||||| |||||| |||| ||| |||||||||||||| | |||| ||||||||| ||| |||||||||||||| ||| || || | |
|
|
| T |
33719254 |
aataaggattgtgattttttggatagcattggtgaacctgattttcaacaatttatgaagtttatggaattttctggagattcttctggttctaggacag |
33719353 |
T |
|
| Q |
113 |
ggaacacttttaattagttcctgaactcaacaacaatggaacagt |
157 |
Q |
| |
|
|||| |||||||||||||| |||| |||||||||| ||||||| |
|
|
| T |
33719354 |
ggaatccttttaattagttcatgaattcaacaacaaatgaacagt |
33719398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 33735931 - 33736035
Alignment:
| Q |
20 |
attgtgatttttgggataggcttggggaaactgattttcaacaactgatgaggtttatggattttggtggagattcttctgattccagaactgggaacac |
119 |
Q |
| |
|
||||||||||||||||||| | || ||| |||||||||||||||| ||||||||||||||||||| | ||||||||||||| || ||||| ||||||| |
|
|
| T |
33735931 |
attgtgatttttgggatagtatcggagaagctgattttcaacaactaatgaggtttatggattttgatagagattcttctgactcaagaacatggaacac |
33736030 |
T |
|
| Q |
120 |
tttta |
124 |
Q |
| |
|
||||| |
|
|
| T |
33736031 |
tttta |
33736035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 33721264 - 33721392
Alignment:
| Q |
22 |
tgtgatttttgggataggcttggggaaa---ctgattttcaacaactgatgaggtttatggattttggtggagattcttctgattccagaactgggaaca |
118 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||| ||||| |||| ||||| || |||| |
|
|
| T |
33721264 |
tgtgatttttgggatagtattggggaagaagctgattttcaacaacttatgaggtttatggatt------------cttctcattctagaacaggaaaca |
33721351 |
T |
|
| Q |
119 |
cttttaattagttcctgaactcaacaacaatggaacagtta |
159 |
Q |
| |
|
|||||||||||||||| || |||||||||| ||||||||| |
|
|
| T |
33721352 |
cttttaattagttcctcaattcaacaacaacagaacagtta |
33721392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 324
Target Start/End: Original strand, 33719443 - 33719564
Alignment:
| Q |
196 |
gtattgattagcttcgctttgcaacaatgtgcataatctttcttccactagattttttcggagg-aggaagttgccttgccagctgcaagtgcaaatcgt |
294 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||||||||| ||||| || ||||||||| ||| |||||||||| || |||||||||||||| || |
|
|
| T |
33719443 |
gtattgattagctttgctgtgcaa---tgtgcataatctctcttctacgagatttttttttagggaggaagttgcttt-----ctgcaagtgcaaatagt |
33719534 |
T |
|
| Q |
295 |
gatttcaatttttgtttttgcagaagaatc |
324 |
Q |
| |
|
||||||||| |||| ||||| ||||||||| |
|
|
| T |
33719535 |
gatttcaatgtttgattttgaagaagaatc |
33719564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 32575079 - 32575155
Alignment:
| Q |
14 |
atatggattgtgatttttgggataggcttggggaaactgattttcaacaactgatgaggtttatggattttggtgga |
90 |
Q |
| |
|
||||||||||||| |||||||||| | |||||||| ||| |||| ||| | |||||||||||||||||||||||| |
|
|
| T |
32575079 |
atatggattgtgaattttgggatatgattggggaaggtgaatttcggcaagttatgaggtttatggattttggtgga |
32575155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University