View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7545_low_4 (Length: 302)
Name: NF7545_low_4
Description: NF7545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7545_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 289
Target Start/End: Complemental strand, 45313538 - 45313256
Alignment:
| Q |
11 |
catcatgaaaaaggtacaagtttaattctgtagacttcattcaaaaggataaataagttagggattaagcttttcttttaccagaacaggattgatagaa |
110 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45313538 |
catcatgaaaaaggtataagtttaattctgtagacttcattcaaaaggataaataagttagggattaagctttccttttaccagaacaggattgatagaa |
45313439 |
T |
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| Q |
111 |
cccaaactctcatccgaaaccatctgctactcttaaatgcagtggaatggcttccaaagagaagatagtttcctatatgaacaccaataaggtacatacc |
210 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
45313438 |
cccaaactctcatctgaaaccatctgctactcttaaatgcagtggaatggcttccaaagagaagatagtttcctatatgaacaccaataaggtacataac |
45313339 |
T |
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| Q |
211 |
ccaatatcctgtagg----nnnnnnngagatatttgtaacaaataccatgtatcaaaagtaaaatgcatcagacatgaaattg |
289 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45313338 |
ccaatatcctgtaggaaaaaaaaagaaagatatttgtaacaaataccatgtatcagaagtaaaatgcatcagacatgaaattg |
45313256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 289
Target Start/End: Complemental strand, 27759217 - 27758942
Alignment:
| Q |
11 |
catcatgaaaaaggtacaagtttaattctgtagacttcattcaaaaggataaataagttagggattaagcttttcttttaccagaacaggattgatagaa |
110 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27759217 |
catcatgaaaaaggtataagcttaattctgtagacttcattcaaaaggataaataagttagggattaagcttttcttttaccagaacaggattgatagaa |
27759118 |
T |
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| Q |
111 |
cccaaactctcatccgaaaccatctgctactcttaaatgcagtggaatggcttccaaagagaagatagtttcctatatgaacaccaataaggtacatacc |
210 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27759117 |
cccaaactctcatccgaaagcatctgctactcttaaaagcagtagaatggcttccaaagagaagatagtttcctatttgaacaccaataaggtacatacc |
27759018 |
T |
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| Q |
211 |
ccaatatcctgtaggnnnnnnngagatatttgtaacaaataccatgtatcaaaagtaaaatgcatcagacatgaaattg |
289 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27759017 |
ccaatatcctgtaggaaaaa---agatgtttgtaacaaataccatgtatcagaagtaaaatgcatcagacatgaaattg |
27758942 |
T |
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