View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7546_high_2 (Length: 323)
Name: NF7546_high_2
Description: NF7546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7546_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 10104332 - 10104160
Alignment:
| Q |
17 |
acattaactgacatgtggctgctaagttgtgccaacgtgtcagagatacaatttgatgaagacgaaaataaatcatgcagaaacgcggggagatgaggac |
116 |
Q |
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| T |
10104332 |
acattaactgacatgtggctgctaagttgtgccaacgtgtcagagatacaatttgatgaagacgaacataaatcatgcagaaacgcggggagatgagaac |
10104233 |
T |
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| Q |
117 |
aatatgtgcaaactacactatcaaaatattttagactttcaatccataaagatttggtacttcaaaacgtttagctattttcaa |
200 |
Q |
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| T |
10104232 |
ga-----------tacagtatcaaaatattttagactttcaatctataaagatttggtacttcaaaacgttcagctattttcaa |
10104160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 312
Target Start/End: Complemental strand, 10104094 - 10104056
Alignment:
| Q |
274 |
gtaaaagtaagacatttcaaaactagtgtaaatattcat |
312 |
Q |
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| T |
10104094 |
gtaaaagtaagacttttcaaaactagtgtaaatattcat |
10104056 |
T |
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