View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7546_low_1 (Length: 672)
Name: NF7546_low_1
Description: NF7546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7546_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 262 - 655
Target Start/End: Complemental strand, 16357959 - 16357560
Alignment:
| Q |
262 |
caccctacatatagaggtgtaagaatgagagcatggggaaaatgggtatctgaaattcgtgagccaagaaagaagtcaagaatatggcttggaacatacc |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16357959 |
caccctacatatagaggtgtaagaatgagagcatggggaaaatgggtatctgaaattcgtgagccaagaaagaagtcaagaatatggcttggaacatacc |
16357860 |
T |
|
| Q |
362 |
ctacagctgaaatggcagctagagctcatgatgtagctgctttagccataaagggtcattcagcttacctcaatttccctaatttggctcaaaatcttcc |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16357859 |
ctacagctgaaatggcagctagagctcatgatgtagctgctttagccataaagggtcattcagcttacctcaatttccctaatttggctcaaaatcttcc |
16357760 |
T |
|
| Q |
462 |
gaggccttcgactacatcacctaaggacattcaacttgcagctgcaaaagcagcagcaattgtgtttgaggagattaaggaagatcaagatcaagat--- |
558 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
16357759 |
gaggccttcgactacatcacctaaggacattcaagttgcagctgcaaaagcagcagccattgtatttgaggagattaaggaagatcaagatcaagatcaa |
16357660 |
T |
|
| Q |
559 |
---caagtttcattttcaactctttcttccattgataatgttcaagagtcgaattcaagttctccatctacaactgctactacaaatgatgatattgatg |
655 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16357659 |
gatcaagtttcattttcaactctttcttccattgataatgttcaagagtctaattcaagttctccatctacaactgctactacaaatgatgatattgatg |
16357560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 17 - 162
Target Start/End: Complemental strand, 16358211 - 16358065
Alignment:
| Q |
17 |
atttttatgcaccttccacactcattcttcctctctatatacacctctctaaatctaatcataaccccctaacttaggaaaacatggaaaatgatgctaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16358211 |
atttttatgcaccttccacactcattcttcctctctata--cacctctctaaatctaatcataaccccctaacttaggaaaacatggaaaatgatgctaa |
16358114 |
T |
|
| Q |
117 |
tgaaaacttctttagcacatcctc---atcaacaccaacatcttctaac |
162 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
16358113 |
tgaaaacttctttagcacatcctcatcatcaacaccaacatcttctaac |
16358065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 2e-45; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 316 - 441
Target Start/End: Complemental strand, 505630 - 505505
Alignment:
| Q |
316 |
attcgtgagccaagaaagaagtcaagaatatggcttggaacataccctacagctgaaatggcagctagagctcatgatgtagctgctttagccataaagg |
415 |
Q |
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|
||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
505630 |
attcgtgagccaaagaaaaaatcaagaatatggcttggaacataccctacagctgaaatggcagctagagcacatgatgtagctgctttagctataaagg |
505531 |
T |
|
| Q |
416 |
gtcattcagcttacctcaatttccct |
441 |
Q |
| |
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|||||||||| ||||| ||||||||| |
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|
| T |
505530 |
gtcattcagcataccttaatttccct |
505505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 295 - 410
Target Start/End: Original strand, 4268654 - 4268769
Alignment:
| Q |
295 |
tggggaaaatgggtatctgaaattcgtgagccaagaaagaagtcaagaatatggcttggaacataccctacagctgaaatggcagctagagctcatgatg |
394 |
Q |
| |
|
||||||||||||||||||||||| || || ||| | || || |||||||| ||||| ||||||| | | ||| | ||||||||||||||||| || |||| |
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| T |
4268654 |
tggggaaaatgggtatctgaaatccgcgaaccacgcaaaaaatcaagaatctggctaggaacattctcaacaccagaaatggcagctagagcacacgatg |
4268753 |
T |
|
| Q |
395 |
tagctgctttagccat |
410 |
Q |
| |
|
|||| |||||| |||| |
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| T |
4268754 |
tagcagctttaaccat |
4268769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 295 - 350
Target Start/End: Complemental strand, 9776648 - 9776593
Alignment:
| Q |
295 |
tggggaaaatgggtatctgaaattcgtgagccaagaaagaagtcaagaatatggct |
350 |
Q |
| |
|
|||||||||||||| || || ||| | ||||||||||| ||||||||||||||||| |
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|
| T |
9776648 |
tggggaaaatgggtgtcagagattagagagccaagaaaaaagtcaagaatatggct |
9776593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 295 - 425
Target Start/End: Complemental strand, 43561916 - 43561786
Alignment:
| Q |
295 |
tggggaaaatgggtatctgaaattcgtgagccaagaaagaagtcaagaatatggcttggaacataccctacagctgaaatggcagctagagctcatgatg |
394 |
Q |
| |
|
||||||||||||||||| ||||| || || || | || || ||| |||| ||||||||||| ||| |||| ||||||||||||||||||| ||||||| |
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| T |
43561916 |
tggggaaaatgggtatcggaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatg |
43561817 |
T |
|
| Q |
395 |
tagctgctttagccataaagggtcattcagc |
425 |
Q |
| |
|
| |||||||| ||||||||||||||||| |
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| T |
43561816 |
ttgctgctttgagtataaagggtcattcagc |
43561786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 331 - 400
Target Start/End: Complemental strand, 36077813 - 36077744
Alignment:
| Q |
331 |
aagaagtcaagaatatggcttggaacataccctacagctgaaatggcagctagagctcatgatgtagctg |
400 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||||||| | ||||||||||||| ||| ||||||||||||| |
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| T |
36077813 |
aagaaatcaagaatatggctaggaacttaccctacaccagaaatggcagctatagcacatgatgtagctg |
36077744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 271 - 402
Target Start/End: Original strand, 41521670 - 41521801
Alignment:
| Q |
271 |
tatagaggtgtaagaatgagagcatggggaaaatgggtatctgaaattcgtgagccaagaaagaagtcaagaatatggcttggaacataccctacagctg |
370 |
Q |
| |
|
|||||||| ||||||||| | |||||| ||||||||||| || ||| | ||||||||||| || |||||||| ||||| ||||| | || || ||| |
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|
| T |
41521670 |
tatagaggagtaagaatgcgtcaatggggcaaatgggtatcagagattagagagccaagaaaaaaatcaagaatttggctcggaacttttccaactcctg |
41521769 |
T |
|
| Q |
371 |
aaatggcagctagagctcatgatgtagctgct |
402 |
Q |
| |
|
| ||||| ||||||||||||||||| |||||| |
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|
| T |
41521770 |
atatggctgctagagctcatgatgtggctgct |
41521801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 271 - 377
Target Start/End: Original strand, 33589180 - 33589286
Alignment:
| Q |
271 |
tatagaggtgtaagaatgagagcatggggaaaatgggtatctgaaattcgtgagccaagaaagaagtcaagaatatggcttggaacataccctacagctg |
370 |
Q |
| |
|
|||||||| || |||||| || ||||||||||||||||||| ||||| ||||| ||| ||||||| |||| |||||||||||||| |||| |||| |
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| T |
33589180 |
tatagaggagttagaatgcgaacatggggaaaatgggtatccgaaatccgtgaaccacgaaagaaaagtcgaatctggcttggaacatatgctacggctg |
33589279 |
T |
|
| Q |
371 |
aaatggc |
377 |
Q |
| |
|
||||||| |
|
|
| T |
33589280 |
aaatggc |
33589286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 271 - 380
Target Start/End: Original strand, 33602299 - 33602408
Alignment:
| Q |
271 |
tatagaggtgtaagaatgagagcatggggaaaatgggtatctgaaattcgtgagccaagaaagaagtcaagaatatggcttggaacataccctacagctg |
370 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||| |||||||| || || ||| ||||||| |||| ||||| ||||||| | | || |||| |
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| T |
33602299 |
tatagaggtgtaagaatgcgaacatggggaaaatgggtttctgaaatccgagaaccacgaaagaaaaaccgaatctggctaggaacattcgcaaccgctg |
33602398 |
T |
|
| Q |
371 |
aaatggcagc |
380 |
Q |
| |
|
|||||||||| |
|
|
| T |
33602399 |
aaatggcagc |
33602408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 295 - 402
Target Start/End: Original strand, 51237916 - 51238023
Alignment:
| Q |
295 |
tggggaaaatgggtatctgaaattcgtgagcc-aagaaagaagtcaagaatatggcttggaacataccctacagctgaaatggcagctagagctcatgat |
393 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||||| || || |||||||||| || |||| || ||| | |||||||||||| |||| || ||| |
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|
| T |
51237916 |
tggggaaaatgggtgtccgaaattcgtgagcctaagaaa-aaatcccgaatatggctcggcacatttcccacaccggaaatggcagctcgagcacacgat |
51238014 |
T |
|
| Q |
394 |
gtagctgct |
402 |
Q |
| |
|
||||||||| |
|
|
| T |
51238015 |
gtagctgct |
51238023 |
T |
|
Back To:
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