View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7546_low_2 (Length: 590)
Name: NF7546_low_2
Description: NF7546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7546_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 18 - 585
Target Start/End: Original strand, 25266693 - 25267269
Alignment:
| Q |
18 |
gtttggtagtacacaatatcaccagtgtcactaacataatgatctttcttcaaactccttataaattctccaataaggtgaaaaggaagaggagctgatt |
117 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25266693 |
gtttggtagtacactatatcaccagtgtcactaacataatgatctttcttcaaactccttataaattctccaataaggtgaaaaggaagaggagctgatt |
25266792 |
T |
|
| Q |
118 |
tctttggctctttgtaatattctccaaacacaggccttgctgcctcagtctgcaaacaaagcgaagaaaaattcaaactcttgactctaaaaacaaatca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
25266793 |
tctttggctctttgtaatattctccaaacacaggccttgctgcctcagtctgcaaacaaagcgaagaaaaattcaaattccagactctaaaaacaaatca |
25266892 |
T |
|
| Q |
218 |
ctatatatatccattgattca-----------gatagagatactcacagcttcaactaggtgatagtgtggaatttgagggaaaaggtgatgaacgacat |
306 |
Q |
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|||||||| |||||| || | ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25266893 |
ctatatat--ccattgttttaactaagatagagatagagttactcacagcttcaactagatgatagtgtggaatttgagggaaaaggtgatgaacgacat |
25266990 |
T |
|
| Q |
307 |
gagttccaatgtcatggtgaatgttattaagccatccataatcgcggtcaagagtagtaagtccacctctaagatagctccattcctaatcaacagacga |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25266991 |
gagttccaatgtcatggtgaatgttattaagccatccataatcgcggtcaagagtagtaagtccacctctaagatagctccattcctaaacaacagacga |
25267090 |
T |
|
| Q |
407 |
agattaaatatgtaaactaaaatcggattacgaaaacattaaaaaggaattgcaatgcgtccatatttcgtctgtttgattaaggtacaatcttaatcca |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25267091 |
agattaaatatgtaaactaaaatcggattacgaaaacattaaaaaggaattgcaatgcgtccatatttcgtctgtctgattaaggtacaatcttaatcca |
25267190 |
T |
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| Q |
507 |
acagttaaaattttgactaaatggacatgtcaacaaatcaaaaagtatatatgtcgtccagtcagtgatgtccatctca |
585 |
Q |
| |
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| T |
25267191 |
acagttaaaattttgactaaatggacatgtcaacaaatcaaaaagtatatatgccgtaaagtcagcgttgtccgtctca |
25267269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 549
Target Start/End: Original strand, 25267297 - 25267357
Alignment:
| Q |
488 |
aaggtacaatcttaatccaacagttaaaattttgactaaatggacatgtcaacaaatcaaaa |
549 |
Q |
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| T |
25267297 |
aaggtacaatcctcatccaacagtcaagattt-gactgaatggacatgtcaacaaaccaaaa |
25267357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 242 - 393
Target Start/End: Complemental strand, 4706890 - 4706739
Alignment:
| Q |
242 |
agagatactcacagcttcaactaggtgatagtgtggaatttgagggaaaaggtgatgaacgacatgagttccaatgtcatggtgaatgttattaagccat |
341 |
Q |
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|||||||||||||||||| | || ||| |||||||| |||||||| || | |||||||| ||||||||||||||||||||| ||||||||||| | | || |
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| T |
4706890 |
agagatactcacagcttctattaagtggtagtgtgggatttgaggaaataagtgatgaatgacatgagttccaatgtcatgatgaatgttatttatcaat |
4706791 |
T |
|
| Q |
342 |
ccataatcgcggtcaagagtagtaagtccacctctaagatagctccattcct |
393 |
Q |
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||||| || || || ||||| |||||||| |||||||| ||||||||||||| |
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| T |
4706790 |
ccatagtcacgatcgagagttgtaagtccgcctctaaggtagctccattcct |
4706739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 4707715 - 4707565
Alignment:
| Q |
18 |
gtttggtagtacacaatatcaccagtgtcactaacataatgatctttcttcaaactccttataaattctccaataaggtgaaaaggaagaggagctgatt |
117 |
Q |
| |
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||||| ||||| |||| ||||||||||||||| ||| |||| ||||| |||| || |||| || |||||||| |||||||| || | ||||| ||||| |
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| T |
4707715 |
gtttgatagtaaacaacatcaccagtgtcactgacaaaatggtcttttttcatgctttttattaaatctccaatgaggtgaaatggtaaaggagatgatt |
4707616 |
T |
|
| Q |
118 |
tctttggctctttgtaatattctccaaacacaggccttgctgcctcagtct |
168 |
Q |
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|||||||||||||||||||| ||||| || ||| | ||||||||||||| |
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| T |
4707615 |
tctttggctctttgtaatatcttccaagaactggcttagctgcctcagtct |
4707565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 255 - 394
Target Start/End: Original strand, 30185303 - 30185442
Alignment:
| Q |
255 |
gcttcaactaggtgatagtgtggaatttgagggaaaaggtgatgaacgacatgagttccaatgtcatggtgaatgttattaagccatccataatcgcggt |
354 |
Q |
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|||||||| | |||||| || |||||||||||||| || |||||||| |||||||| ||||||||||| ||||||||||||| ||| ||||| || || | |
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| T |
30185303 |
gcttcaaccaagtgataatgaggaatttgagggaagagatgatgaacaacatgagtgccaatgtcatgatgaatgttattaatccaaccatagtcacgat |
30185402 |
T |
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| Q |
355 |
caagagtagtaagtccacctctaagatagctccattccta |
394 |
Q |
| |
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||| || || ||||||||||| |||||| |||||||||| |
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| T |
30185403 |
caacggttgttagtccacctcttagataggtccattccta |
30185442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 267 - 346
Target Start/End: Original strand, 25838512 - 25838591
Alignment:
| Q |
267 |
tgatagtgtggaatttgagggaaaaggtgatgaacgacatgagttccaatgtcatggtgaatgttattaagccatccata |
346 |
Q |
| |
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||||| ||||||||||| || ||||| ||||||| ||||| || |||||||||||||||||||| |||| ||| ||||| |
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| T |
25838512 |
tgataatgtggaatttgtggaaaaagatgatgaataacatgggtgccaatgtcatggtgaatgttgttaacccaaccata |
25838591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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