View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7546_low_3 (Length: 482)
Name: NF7546_low_3
Description: NF7546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7546_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 13 - 462
Target Start/End: Original strand, 4757481 - 4757943
Alignment:
| Q |
13 |
aatatacctttgttggaggtgtgctttgtttgatgttcatcaaatgctttaagtgtggagaggatatggtttgtttgttgggtgatggtttgagtatgat |
112 |
Q |
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| T |
4757481 |
aatatacctttgttagaggtgtgctttgtttgatgttcatcaaatgctttaagtgtggagaggatatggtttgtttgttgggtgatggtttgagtatgat |
4757580 |
T |
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| Q |
113 |
tctataatgtcagtgttgaatagagaaaatgggaaaatttgtatgaagga-gtggtttct------------tgttactcctcttttctactttgttcct |
199 |
Q |
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| T |
4757581 |
tctataatgtcagtgttgaatagagaaaatgggaaaatttgtatgaaggacgtagaagctaaagattgataatgttactcctcttctctactttgttcct |
4757680 |
T |
|
| Q |
200 |
gccttcctatacccttttatagatgaaccctctcctcttgaatcttgaatttgttattgatgctttaagaccaatggtcacagcctcaaagcatcatttg |
299 |
Q |
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| T |
4757681 |
gccttcctatacccttttatagatgaaccctctcctcttgaatcttgaatttgttattgatgctttaagaccaatggtcacagcctcaaagcatcatttg |
4757780 |
T |
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| Q |
300 |
ttacttgcaacaattcctctttcatgcaataaagattgctttcaatttttacttcttaaagtgtgtttgttatttacctattggggtgatggcttgtgac |
399 |
Q |
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| T |
4757781 |
ttacttgcaacaattcctctttcatgcaataaagattgctttcaatttttacttcttaaagtgtgtttgttatttacctattgaggtgatggcttgtgac |
4757880 |
T |
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| Q |
400 |
taaggtttgaaacactagacttgcaagaagtgatattgccaagaaaaggaatcatgcaagaag |
462 |
Q |
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| T |
4757881 |
taaggtttgaaacactagacttgcaagaagtgatattgccaagaaaaggaatcatgcaagaag |
4757943 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 308 - 391
Target Start/End: Original strand, 29795273 - 29795356
Alignment:
| Q |
308 |
aacaattcctctttcatgcaataaagattgctttcaatttttacttcttaaagtgtgtttgttatttacctattggggtgatgg |
391 |
Q |
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|||||||||| |||| ||||||| ||||||||||||| |||| ||| ||||||||||||||| |||||| |||||| ||||| |
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| T |
29795273 |
aacaattcctatttcttgcaatagagattgctttcaaattttcctttctaaagtgtgtttgttgtttaccatttggggagatgg |
29795356 |
T |
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