View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7546_low_4 (Length: 379)
Name: NF7546_low_4
Description: NF7546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7546_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 33312771 - 33312621
Alignment:
| Q |
18 |
agctaaaactaatgatttgccatttcaaatttagtcattcttttggaccataaacttatgaatattatttagctgcaagttaatacattaattatttctt |
117 |
Q |
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| T |
33312771 |
agctaaaactaatgatttgccatttcaaatttagtcattcttttggaccataaacttatgaatattatttagctgcaagttaatacattaattatttctt |
33312672 |
T |
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| Q |
118 |
tccccccttgtggctaatgattttattttccttgtagatatatatatcaaa |
168 |
Q |
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| T |
33312671 |
tccccccttgtggctaatgattttattttccttgtagatacatatatcaaa |
33312621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 160 - 266
Target Start/End: Complemental strand, 33312333 - 33312227
Alignment:
| Q |
160 |
tatatcaaacaagtagcagtacgactctacgcgtcacatattggcgaaatatatattattagagtaactaattgcaaaatatactaattgatcaagttaa |
259 |
Q |
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| T |
33312333 |
tatatcaaacaagtagcagtacgactctacgcgtcacatattggcgaaatatatattattagagtaactaattacaaaatatactaattgatcaagttaa |
33312234 |
T |
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| Q |
260 |
aatatat |
266 |
Q |
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||||||| |
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| T |
33312233 |
aatatat |
33312227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 29113122 - 29113262
Alignment:
| Q |
19 |
gctaaaactaatgatttgccatttcaaatttagtcattcttttggaccataaacttatgaa-----tattatttagctgcaagttaatacattaattatt |
113 |
Q |
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| T |
29113122 |
gctaaaactaatgatttggcatttcaaatttagtcatatttttggaccataaacttaagaatgtcttattatttagctgcaatttaatacattaattatt |
29113221 |
T |
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| Q |
114 |
tctttcccccc--ttgtggctaatgattttattttccttgt |
152 |
Q |
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| T |
29113222 |
tcattcccctctgttgtggctaatgatttctttttccttgt |
29113262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 312 - 362
Target Start/End: Complemental strand, 33312219 - 33312169
Alignment:
| Q |
312 |
gttagccaaagctaactcattgacatgcatagctacgcctttgatgccaca |
362 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33312219 |
gttagccaaagctacctcattgacatgcatagctacgcctttgatgccaca |
33312169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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