View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7546_low_6 (Length: 351)

Name: NF7546_low_6
Description: NF7546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7546_low_6
NF7546_low_6
[»] chr2 (1 HSPs)
chr2 (45-343)||(37797071-37797369)


Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 45 - 343
Target Start/End: Complemental strand, 37797369 - 37797071
Alignment:
Q  45 acgagctattttgaagaatacttcttatgaattatggaaaggtagaaaatctaatatctcttattttcatcaatttggttgtaatgaattcttattttca 144  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37797369 acgacctattttgaagaatactacttatgaattatggaaaggtagaaaatccaatatctcttattttcatcaatttggttgtaatgaattcttattttca 37797270  T
Q  145 aaccacaaatgtatgtgttttgaggatattttgaacgacctagagtataaagagtatataacgaagaaaccttaatggtggaagaatcaattcatgtaag 244  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37797269 aaccacaaatgtatgtgtttttagaatattttgaacgacctagagtataaagagtatataacgaagaaaccttaatggtggaagaatcaattcatgtaag 37797170  T
Q  245 gtttattgacaaagagcttggcaatgaaaaggcaaagctagtgcaagaatttgcagataatggataaaccaggtgacaacaccctatagtgaaacacca 343  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37797169 gtttattgacaaagagcttggcaatgaaaaggaaaaactagtgcaagaatttgcagataatggataaaccaggtgacaacaccctatagtgaaacacca 37797071  T

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