View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7546_low_8 (Length: 311)
Name: NF7546_low_8
Description: NF7546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7546_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 25266693 - 25266982
Alignment:
| Q |
18 |
gtttggtagtacacaatatcaccagtgtcactaacataatgatctttcttcaaactccttataaattctccaataaggtgaaaaggaagaggagctgatt |
117 |
Q |
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| T |
25266693 |
gtttggtagtacactatatcaccagtgtcactaacataatgatctttcttcaaactccttataaattctccaataaggtgaaaaggaagaggagctgatt |
25266792 |
T |
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| Q |
118 |
tctttggctctttgtaatattctccaaacacaggccttgctgcctcagtctgcaaacaaagcgaagaaaaattcaaactcttgactctaaaaacaaatca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
25266793 |
tctttggctctttgtaatattctccaaacacaggccttgctgcctcagtctgcaaacaaagcgaagaaaaattcaaattccagactctaaaaacaaatca |
25266892 |
T |
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| Q |
218 |
ctatatatatccatt-----------gattcagatagagatactcacagcttcaactaggtgatagtgtggaatttgagggaaaaggtgatg |
298 |
Q |
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| T |
25266893 |
c--tatatatccattgttttaactaagatagagatagagttactcacagcttcaactagatgatagtgtggaatttgagggaaaaggtgatg |
25266982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 4707715 - 4707565
Alignment:
| Q |
18 |
gtttggtagtacacaatatcaccagtgtcactaacataatgatctttcttcaaactccttataaattctccaataaggtgaaaaggaagaggagctgatt |
117 |
Q |
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||||| ||||| |||| ||||||||||||||| ||| |||| ||||| |||| || |||| || |||||||| |||||||| || | ||||| ||||| |
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| T |
4707715 |
gtttgatagtaaacaacatcaccagtgtcactgacaaaatggtcttttttcatgctttttattaaatctccaatgaggtgaaatggtaaaggagatgatt |
4707616 |
T |
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| Q |
118 |
tctttggctctttgtaatattctccaaacacaggccttgctgcctcagtct |
168 |
Q |
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|||||||||||||||||||| ||||| || ||| | ||||||||||||| |
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| T |
4707615 |
tctttggctctttgtaatatcttccaagaactggcttagctgcctcagtct |
4707565 |
T |
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