View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7546_low_9 (Length: 309)

Name: NF7546_low_9
Description: NF7546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7546_low_9
NF7546_low_9
[»] chr5 (13 HSPs)
chr5 (5-289)||(37261505-37261789)
chr5 (4-289)||(3876324-3876609)
chr5 (1-289)||(25542526-25542814)
chr5 (4-289)||(3690178-3690463)
chr5 (1-289)||(27881282-27881570)
chr5 (1-289)||(39883381-39883669)
chr5 (14-289)||(30346362-30346637)
chr5 (1-289)||(14192545-14192833)
chr5 (4-289)||(37373137-37373422)
chr5 (1-285)||(17871375-17871658)
chr5 (14-289)||(10025189-10025464)
chr5 (14-289)||(24629686-24629954)
chr5 (4-289)||(8428318-8428592)
[»] scaffold0356 (1 HSPs)
scaffold0356 (1-289)||(17610-17897)
[»] chr3 (12 HSPs)
chr3 (30-289)||(10038857-10039116)
chr3 (4-289)||(10110801-10111086)
chr3 (4-289)||(10000608-10000893)
chr3 (4-289)||(32972-33257)
chr3 (1-289)||(10968515-10968802)
chr3 (4-289)||(10237756-10238040)
chr3 (4-289)||(13530240-13530525)
chr3 (1-289)||(50410370-50410654)
chr3 (4-289)||(11368849-11369125)
chr3 (4-223)||(11362460-11362681)
chr3 (109-289)||(52918332-52918512)
chr3 (27-68)||(52918289-52918330)
[»] scaffold0017 (1 HSPs)
scaffold0017 (3-289)||(186754-187040)
[»] chr1 (10 HSPs)
chr1 (3-289)||(2452850-2453136)
chr1 (1-289)||(16042223-16042511)
chr1 (4-289)||(36207416-36207701)
chr1 (4-289)||(48775068-48775353)
chr1 (3-289)||(48233578-48233864)
chr1 (4-289)||(37389885-37390170)
chr1 (1-278)||(2329364-2329641)
chr1 (4-285)||(6310731-6311012)
chr1 (14-289)||(52500795-52501063)
chr1 (1-189)||(18148886-18149074)
[»] chr7 (8 HSPs)
chr7 (4-289)||(21069795-21070080)
chr7 (1-289)||(5828288-5828576)
chr7 (1-289)||(9000878-9001166)
chr7 (4-289)||(7036921-7037206)
chr7 (14-289)||(42232210-42232486)
chr7 (5-289)||(12780881-12781165)
chr7 (4-285)||(22844005-22844285)
chr7 (4-221)||(12785790-12785996)
[»] scaffold0550 (1 HSPs)
scaffold0550 (4-280)||(314-590)
[»] scaffold0073 (2 HSPs)
scaffold0073 (1-289)||(32130-32418)
scaffold0073 (53-289)||(1-237)
[»] chr8 (6 HSPs)
chr8 (1-289)||(21113477-21113765)
chr8 (4-289)||(25218298-25218583)
chr8 (10-289)||(25208780-25209059)
chr8 (4-289)||(7822039-7822324)
chr8 (1-201)||(30307375-30307575)
chr8 (205-289)||(30325877-30325961)
[»] chr4 (8 HSPs)
chr4 (1-289)||(1860875-1861163)
chr4 (4-289)||(35856108-35856393)
chr4 (14-289)||(55558856-55559131)
chr4 (1-289)||(617957-618245)
chr4 (1-289)||(49710370-49710658)
chr4 (1-289)||(13337433-13337721)
chr4 (4-280)||(38518297-38518573)
chr4 (4-221)||(49786640-49786846)
[»] chr2 (12 HSPs)
chr2 (1-289)||(24268803-24269091)
chr2 (1-289)||(27192687-27192975)
chr2 (1-289)||(27509572-27509860)
chr2 (1-289)||(27842501-27842789)
chr2 (1-289)||(21395568-21395856)
chr2 (1-280)||(24246023-24246302)
chr2 (27-289)||(35609877-35610139)
chr2 (5-254)||(17683597-17683846)
chr2 (131-282)||(3642920-3643071)
chr2 (4-221)||(28665984-28666190)
chr2 (4-221)||(37824818-37825024)
chr2 (4-220)||(41919986-41920191)
[»] scaffold0003 (2 HSPs)
scaffold0003 (4-289)||(183012-183297)
scaffold0003 (4-289)||(165732-166019)
[»] chr6 (9 HSPs)
chr6 (3-289)||(2201912-2202198)
chr6 (1-289)||(18344323-18344611)
chr6 (1-285)||(30881525-30881808)
chr6 (5-244)||(10187746-10187985)
chr6 (51-289)||(12517522-12517760)
chr6 (3-179)||(15333843-15334019)
chr6 (111-256)||(18814054-18814199)
chr6 (4-103)||(29639947-29640046)
chr6 (4-103)||(31510118-31510217)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-289)||(321069-321357)
[»] scaffold0262 (1 HSPs)
scaffold0262 (1-289)||(19204-19491)
[»] scaffold0118 (1 HSPs)
scaffold0118 (14-289)||(28452-28727)
[»] scaffold0134 (1 HSPs)
scaffold0134 (1-289)||(4993-5281)
[»] scaffold0107 (1 HSPs)
scaffold0107 (1-222)||(39954-40175)
[»] scaffold1139 (1 HSPs)
scaffold1139 (1-221)||(1198-1418)
[»] scaffold0090 (1 HSPs)
scaffold0090 (4-221)||(48748-48954)
[»] scaffold0225 (1 HSPs)
scaffold0225 (137-289)||(14010-14162)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 289
Target Start/End: Original strand, 37261505 - 37261789
Alignment:
Q  5 atatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattagc 104  Q
    |||| ||||||||||| | |  || ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37261505 atataagcaaatcttcggaaatttataccttcgtttcaccattctcatccgaagcgtcgttgccgtctccaattgagagtatccacttgccaaaattagc 37261604  T
Q  105 aatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgatt 204  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||     
T  37261605 aatttcttcttgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacacattacaataagctcatatctttgatgaattgatc 37261704  T
Q  205 gaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    ||| ||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37261705 gagacatcaacaatatcctgcctcgttccttttcagacaacaggcaatatcttcctgaaatcaccacataaaactattgtcattc 37261789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 4 - 289
Target Start/End: Complemental strand, 3876609 - 3876324
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    ||||||||||||||||  |||  ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3876609 gatatgagcaaatctttgggaatttctaccttcatttcaccattctcattcgaagcgtcgttgccgtctccaattgagagtatccacttgccaaaattag 3876510  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    || ||||||||||||||||| || ||||||||||||| |||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||    
T  3876509 cagtttcttcctgctctgcaggtcccgaagatgcacccaatctcatattaactgtaagcctcaacacattacaataagcccatatctttgatgaattgat 3876410  T
Q  204 tgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||||||||||||||||||| ||| |||||||||| |||||| | |||||||| |||||||||||||| |||||||| | ||||||    
T  3876409 tgaggcatcaacaatatcctgcctcgttccttttcggacaacagacaatatctgcctgaaatcaccacctaaaactactatcattc 3876324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 25542814 - 25542526
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||| |    
T  25542814 tccgatatgagaaaatcttcaggaatttctaccttcatttcaccattctcatccgaagcgttgttgccgtctccaattgagagtatccacttgccaaagt 25542715  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    |||||||||||| ||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  25542714 tagcaatttctttctgctttgcaggtaccgaagatgcacccaatctcatattaacagtaagcctcaacacattacaataagcccatatctttgatgaatt 25542615  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||||| ||||||||||||| || ||  |||||||||| |||||| | |||||||| |||||||||||||| |||||||| ||||||||    
T  25542614 gattgatgcatcaacaatattctgccacgttccttttcggacaacagacaatatctgcctgaaatcaccacctaaaactactgtcattc 25542526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 289
Target Start/End: Original strand, 3690178 - 3690463
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    ||||||||||||||||  |||  ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  3690178 gatatgagcaaatctttgggaatttctaccttcatttcaccattctcattcgaagtgtcgttgccgtctccaattgagagtatccacttgccaaaattag 3690277  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    || ||||||||||||||||| || ||||||||||||| |||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||    
T  3690278 cagtttcttcctgctctgcaggtcccgaagatgcacccaatctcatattaactgtaagcctcaacacattacaataagcccatatctttgatgaattgat 3690377  T
Q  204 tgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||||||||||||||||||| ||| |||||||||| |||||| | |||||||| |||||||||||||| |||||||| | ||||||    
T  3690378 tgaggcatcaacaatatcctgcctcgttccttttcggacaacagacaatatctgcctgaaatcaccacctaaaactactatcattc 3690463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 27881282 - 27881570
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    |||||||| |||||||||||||||| ||||||||| ||||||||||| | ||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  27881282 tccgatatcagcaaatcttcaggagtttctacctttatttcaccattgtcatccgaagcatcgttgccgtctccaattgagagtatccacttgccaaaat 27881381  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    ||||||||||| ||||||||||| |||||||||||||||| |||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||    
T  27881382 tagcaatttctacctgctctgcatgtaccgaagatgcacccaatctcatattaacggtaagcctcaacacattacaataagcccatatctttgatgaatt 27881481  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    ||  ||||||||||||||||||  ||| ||||||  || ||||||  ||||||||| ||| |||||||||| |||||||| ||||||||    
T  27881482 gaccgaggcatcaacaatatccggccttgttcctcctcggacaacatgcaatatctgcctaaaatcaccacctaaaactactgtcattc 27881570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 39883381 - 39883669
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    |||||||| |||||||||| ||||   |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39883381 tccgatatcagcaaatctttaggaatatctaccttcatttcaccattctcatccgaagcgtcgttgccgtctccaattgagagtatccacttgccaaaat 39883480  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    ||||||||||||| ||||||||| ||||||||| |||||| |||||||||||||||||||||||||||  || |||||||||| |||||||||| |||||    
T  39883481 tagcaatttcttcatgctctgcatgtaccgaagctgcacccaatctcatattaacagtaagcctcaacatattacaataagccaatatctttgacgaatt 39883580  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    || |||||||||||||||||||  ||| ||||||  |  |||||| |||||||||| |||||||||||||| |||||||| ||||||||    
T  39883581 gactgaggcatcaacaatatccggcctcgttcctcctaggacaacaggcaatatctgcctgaaatcaccacgtaaaactactgtcattc 39883669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 14 - 289
Target Start/End: Complemental strand, 30346637 - 30346362
Alignment:
Q  14 aatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattagcaatttcttc 113  Q
    |||||||||||  ||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||     
T  30346637 aatcttcaggaatttctaccttcatttcaccattctcatccgaagcgttgttgccgtctccaattcagagtatccacttgccaaaattagcaatttcttt 30346538  T
Q  114 ctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgattgaggcatca 213  Q
    |||||||||| ||||| |||||||||| |||||||||||||||||||| || ||| ||| | ||||||| ||||||||||||||||||||||| ||||||    
T  30346537 ctgctctgcaggtaccaaagatgcacccaatctcatattaacagtaagtcttaacacattaaaataagcacatatctttgatgaattgattgatgcatca 30346438  T
Q  214 acaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||||||||| ||| |||||||||| ||||||  ||||||||| ||||| |||||||| |||||||||||||||||    
T  30346437 acaatatcctgcctcgttccttttcggacaacatgcaatatctgcctgacatcaccacctaaaactattgtcattc 30346362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 14192833 - 14192545
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||| || ||||||    
T  14192833 tccgatatgagcaaatcttcagaaatttctaccttcatttcaccattctgatccgaaacttcgttgccgtctccaattgagagtatccacttgtcaaaat 14192734  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    ||||||||||||||| |||| || |||||||||||||||| ||||||||||||||||||||||||||| ||| | ||||||||||||||||| |||||||    
T  14192733 tagcaatttcttcctactctacaggtaccgaagatgcacccaatctcatattaacagtaagcctcaacacattataataagcccatatctttaatgaatt 14192634  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
     |||| ||||||||||||||||| ||| |||||||||| | ||||  ||||||| | |||||||||||||| |||||| | ||||||||    
T  14192633 aattggggcatcaacaatatcctgcctcgttccttttcgggcaacatgcaatatatgcctgaaatcaccacctaaaacaactgtcattc 14192545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 4 - 289
Target Start/End: Original strand, 37373137 - 37373422
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    ||||| |||||||||||||||  ||||||||||||||||||||| | | ||||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  37373137 gatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgccgtctccaattgagagtatccacttgcaaaaattag 37373236  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||     
T  37373237 caatttcttcctgctctgcaggtaccgaagatgcacccaatctcatattaacagtaagcctcaacacattacaataagcccatatctttgacgaattgac 37373336  T
Q  204 tgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
     || |||||||||||||||  ||| ||||||  ||||||||| |||||||||| | | |||||||||| |||||||| ||| ||||    
T  37373337 cgacgcatcaacaatatccggcctcgttcctcctcagacaacaggcaatatctgcttaaaatcaccacctaaaactactgtgattc 37373422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 17871658 - 17871375
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    ||||||||||||||||||||||||  |||||||||||||||||||| || |||||||||| ||||||| |||| |||||||||||||||  |||||||||    
T  17871658 tccgatatgagcaaatcttcaggaatttctaccttcatttcaccat-ctcatccgaagcgccgttgccttctctaattgagagtatccatttgccaaaat 17871560  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    ||||||||| ||||||||||||| ||||| |||||||||| |||| |||||||||||||||||||||| ||| ||||||||| ||||||||||||||| |    
T  17871559 tagcaatttattcctgctctgcaggtaccaaagatgcacccaatcccatattaacagtaagcctcaacacattacaataagctcatatctttgatgaact 17871460  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtc 285  Q
    ||||||||||||||||||||| | ||| |||||||||| ||  ||  ||||||||| |||||||||||||| ||||||| |||||    
T  17871459 gattgaggcatcaacaatatcatgcctcgttccttttcggatgacatgcaatatctgcctgaaatcaccacctaaaacttttgtc 17871375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 10025189 - 10025464
Alignment:
Q  14 aatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattagcaatttcttc 113  Q
    |||||| ||||  ||||||||||||||||||||||| ||||||||||| ||| ||||||| |||| ||||||||||| |||||||||||||||||||||     
T  10025189 aatctttaggaatttctaccttcatttcaccattctcatccgaagcgttgttaccgtctctaattcagagtatccacttgccaaaattagcaatttcttt 10025288  T
Q  114 ctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgattgaggcatca 213  Q
    |||||||||| ||||| |||||||||| | |||||||||||||||||| |||||| ||| | ||||||| ||||||||||||||||||||||| ||||||    
T  10025289 ctgctctgcaggtaccaaagatgcacccagtctcatattaacagtaagtctcaacacatcaaaataagcacatatctttgatgaattgattgatgcatca 10025388  T
Q  214 acaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||||||  | ||| |||||||||| |||| | |||||||||| ||| | |||||||| |||||||||||||||||    
T  10025389 acaatatattgcctcgttccttttcggacagcaggcaatatctgcctaatatcaccacctaaaactattgtcattc 10025464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 14 - 289
Target Start/End: Complemental strand, 24629954 - 24629686
Alignment:
Q  14 aatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattagcaatttcttc 113  Q
    |||||||||||  |||||||||||||| |||||||| ||||||||||| |||| ||||||||||| ||||||||||| |||| |||||       ||||     
T  24629954 aatcttcaggaatttctaccttcatttaaccattctcatccgaagcgttgttgtcgtctccaattcagagtatccacttgccgaaatt-------tcttt 24629862  T
Q  114 ctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgattgaggcatca 213  Q
    |||||||||| ||||| |||||||||| |||||||||||||||||||| |||||| ||| | ||||||| ||||||||||||||||||||||| ||||||    
T  24629861 ctgctctgcaggtaccaaagatgcacccaatctcatattaacagtaagtctcaacacattaaaataagcacatatctttgatgaattgattgatgcatca 24629762  T
Q  214 acaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||||||||| ||| |||||||||| ||||||  ||||||||| ||||| |||||||| |||||||||||||||||    
T  24629761 acaatatcctgcctcgttccttttcggacaacatgcaatatctgcctgatatcaccacctaaaactattgtcattc 24629686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 4 - 289
Target Start/End: Complemental strand, 8428592 - 8428318
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    ||||| |||||||||||||||  ||||||||||||||||||||| | | ||||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  8428592 gatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgccgtctccaattgagagtatccacttgcaaaaattag 8428493  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    |||||||||||||||||||| |||||||||||||| | |||           || |||||||||  ||| ||||||||||||||||||||| |||||||     
T  8428492 caatttcttcctgctctgcaggtaccgaagatgcatccaat-----------agcaagcctcaaaacattacaataagcccatatctttgacgaattgac 8428404  T
Q  204 tgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
     |||||||||||||||||   ||| ||||||  || |||||| |||||||||| ||| |||||||||| |||||||| || |||||    
T  8428403 cgaggcatcaacaatatctggcctcgttcctcctcggacaacaggcaatatctgcctaaaatcaccacctaaaactactgccattc 8428318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 17897 - 17610
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||| ||| |||||    
T  17897 tccgatatgagcaaatcttcaggaacttctaccttcatttcaccattctcatccgaagcttcgttgctgtctccaattgagagtatccacttgctaaaat 17798  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||    
T  17797 tagcaatttcttcctgctctgcaggtaccgaagatgcacccaatctcatattaacagtaagcctcaacacattacaa-aagcccatatctttgatgaatt 17699  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||||  |||||| || |||||||||||||||||||||| |||||||||    
T  17698 gattgaggcatcaacaatatcctgcctcgttccttttcggacaacatgcaatagctgcctgaaatcaccacataaaactcttgtcattc 17610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 30 - 289
Target Start/End: Original strand, 10038857 - 10039116
Alignment:
Q  30 taccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattagcaatttcttcctgctctgcacgtacc 129  Q
    ||||||| |||||||||||| |||  ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  10038857 taccttcgtttcaccattctcatctaaagcgtcgttgccgtcttcaattgagagtatccacttgccaaaattagcaatttcttcttgctctgcacgtacc 10038956  T
Q  130 gaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgattgaggcatcaacaatatcctacctag 229  Q
    ||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  10038957 gaagatgcacctaatctcatattaacaataagcctcaacacattacaataagcccatatctttgatgaattgattgaggcatcaacaatatcctgcctcg 10039056  T
Q  230 ttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    ||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||    
T  10039057 ttccttttcagacaacatgcaatatcttcttgaaatcaccacataaaactattgtcattc 10039116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 289
Target Start/End: Original strand, 10110801 - 10111086
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    |||||||||||||||||||||  |||||||||||||||||||||||  |||||||||| |||||||||||||||| | ||||||||| ||||||||||||    
T  10110801 gatatgagcaaatcttcaggaatttctaccttcatttcaccattctcctccgaagcgttgttgccgtctccaattcatagtatccacttgccaaaattag 10110900  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    ||||||||| |||||||| | ||||| |||||||||| ||||||||||||||||||||| | ||| ||| | ||||||| ||||||||||||||||||||    
T  10110901 caatttctttctgctctgtaggtaccaaagatgcacccaatctcatattaacagtaagcattaacacattaaaataagctcatatctttgatgaattgat 10111000  T
Q  204 tgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    ||| |||||||||||||||| ||| |||||||||| |||||| |||||||||| |||||||||||||| |||||||||||||||||    
T  10111001 tgatgcatcaacaatatcctgcctcgttccttttcggacaacaggcaatatctgcctgaaatcaccacctaaaactattgtcattc 10111086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 4 - 289
Target Start/End: Original strand, 10000608 - 10000893
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    |||||||||||||||||||||  |||||||||||||||||||||||  |||||||||| |||||||||||||||| | ||||||||| |||||||||||     
T  10000608 gatatgagcaaatcttcaggaatttctaccttcatttcaccattctcctccgaagcgttgttgccgtctccaattcatagtatccacttgccaaaattaa 10000707  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    ||||||||| || ||||||| ||||| |||||||||| ||||||||||||||||||||||| ||| ||| | ||||||||||||||||||||||||||||    
T  10000708 caatttctttctactctgcaggtaccaaagatgcacccaatctcatattaacagtaagccttaacacattaaaataagcccatatctttgatgaattgat 10000807  T
Q  204 tgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    ||| |||||||||||||||| ||| |||||||||| |||||| ||||| |||| ||||||||| |||| |||||||||||||||||    
T  10000808 tgatgcatcaacaatatcctgcctcgttccttttcggacaacaggcaacatctgcctgaaatccccacctaaaactattgtcattc 10000893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 4 - 289
Target Start/End: Original strand, 32972 - 33257
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    ||||| |||||||||||||||  ||||||||||||||||||||| | | ||||||| | ||||||||||| |||||||||||||||| ||| ||||||||    
T  32972 gatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcattgttgccgtctctaattgagagtatccacttgcaaaaattag 33071  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||     
T  33072 caatttcttcctgctctgcaggtaccgaagatgcacccaatctcatattaacagtaagcctcaacacattacaataagcccatatctttgacgaattgac 33171  T
Q  204 tgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
     ||||||||||||||||||  | | ||||||  || ||||||  ||||||||| ||| |||||||||| |||||||||||||||||    
T  33172 cgaggcatcaacaatatccggcgtcgttcctcctcggacaacatgcaatatctgcctaaaatcaccacctaaaactattgtcattc 33257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 10968802 - 10968515
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    |||||||| ||||||||| ||| |  ||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| ||||| |||||||||    
T  10968802 tccgatatcagcaaatct-cagaaatttctaccttcatttcaccattctcatctgaagcgtcgttgccatctccaattgagagtgtccacttgccaaaat 10968704  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    ||||||||||||||||||||  | |||| ||||||||||| ||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||    
T  10968703 tagcaatttcttcctgctctataggtactgaagatgcacccaatctcatattaacagtaagcctcaacacattacaataaacccatatctttgatgaatt 10968604  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    ||||||||||||||||||||||| ||| | ||| |||| ||| || | |||||||| |||||||||||||  |||||||| ||||||||    
T  10968603 gattgaggcatcaacaatatcctccctcgatccgtttcggactacagacaatatctgcctgaaatcaccatctaaaactactgtcattc 10968515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 4 - 289
Target Start/End: Original strand, 10237756 - 10238040
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    ||||||||||| |||||||||  ||||||| | ||||||||||||   |||||||||| |||||||||||||||| ||||||||||| ||||||||||||    
T  10237756 gatatgagcaattcttcaggaatttctaccgttatttcaccattccc-tccgaagcgttgttgccgtctccaattcagagtatccacttgccaaaattag 10237854  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    ||||||||| |||||| ||| ||||| |||||||| | ||||| ||||||||||||||||| ||| ||| | ||||||||||||||||||||||||||||    
T  10237855 caatttctttctgctcagcaggtaccaaagatgcatccaatcttatattaacagtaagccttaacacattaaaataagcccatatctttgatgaattgat 10237954  T
Q  204 tgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    ||| |||||||||||||||| ||| |||||||||| ||||||  ||||||||| |||||||||||||| |||||||||||||||||    
T  10237955 tgatgcatcaacaatatcctgcctcgttccttttcggacaacaagcaatatctgcctgaaatcaccacctaaaactattgtcattc 10238040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 4 - 289
Target Start/End: Original strand, 13530240 - 13530525
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    ||||||| |||||||||  ||  ||||||||||||||||||||||| | | || |||||||||||||||||||||||||||||  || ||||||||||||    
T  13530240 gatatgaccaaatcttctagaatttctaccttcatttcaccattctcacctgatgcgtcgttgccgtctccaattgagagtatatacttgccaaaattag 13530339  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    |||||| |||||||||| || |||||||||||||||  |||||||||||||||||||||||| || ||| ||||||||||||||||| ||||||||||||    
T  13530340 caatttattcctgctctacaggtaccgaagatgcactcaatctcatattaacagtaagcctctacacattacaataagcccatatctgtgatgaattgat 13530439  T
Q  204 tgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||||||||||||||||| | ||| |||||||||  |||||| |||||||||| |||||||||||||  |||||||| ||||||||    
T  13530440 tgaggcatcaacaatatcgtgcctcgttcctttttggacaacaggcaatatctgcctgaaatcaccagctaaaactactgtcattc 13530525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 50410370 - 50410654
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    ||||||||||| ||||||||||||  ||    ||||||||||||||||| |||| |||||||||| ||||||| |||||||||||||||| |||||||||    
T  50410370 tccgatatgagaaaatcttcaggaattt----cttcatttcaccattctcatccaaagcgtcgttaccgtctctaattgagagtatccacttgccaaaat 50410465  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    ||||||||| |||||||||| || |||||||||||||||  ||||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||    
T  50410466 tagcaatttattcctgctctacaggtaccgaagatgcactcaatctcatattaacagtaagcctcaacacattagaataagccaatatctttgatgaatt 50410565  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||||||||||||| |||||| | ||| ||| |||| | |||||| |||| ||||| |||||||||||||| |||||||| ||||||||    
T  50410566 gattgaggcatcaaaaatatcgtgcctcgttgctttacggacaacaggcagtatctgcctgaaatcaccacctaaaactactgtcattc 50410654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 4 - 289
Target Start/End: Original strand, 11368849 - 11369125
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    ||||||||||||||||| |||  |||||| |||||||||||||||| |||         |||| | |||||||||||| |||||||| |||||||||||     
T  11368849 gatatgagcaaatcttcgggaatttctacattcatttcaccattctcatc---------gttgtcctctccaattgagggtatccacttgccaaaattat 11368939  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    || ||||||||| ||||||| || ||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||    
T  11368940 cagtttcttccttctctgcaggtcccgaagatgcacccaatctcatattaacagtaagcctcaacacattacaataagtccatatctttgatgaattgat 11369039  T
Q  204 tgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||||||||||||||||||| ||| |||||||||| |||||| | |||||| | |||||||||||||| |||||||| ||||||||    
T  11369040 tgaggcatcaacaatatcctgcctcgttccttttcggacaacagacaatatatgcctgaaatcaccacttaaaactactgtcattc 11369125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 11362460 - 11362681
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtat--ccacatgccaaaatt 101  Q
    |||||||| |||||||| |||  |||  |||||||||||||||||| || ||||||||||||| |||||||||||||||||||  |||| ||||||||||    
T  11362460 gatatgagtaaatcttcgggaatttcccccttcatttcaccattctcattcgaagcgtcgttgtcgtctccaattgagagtatatccacttgccaaaatt 11362559  T
Q  102 agcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattg 201  Q
    |||| ||| ||| ||||||||| || ||||||||||||| |||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||    
T  11362560 agcagtttattcttgctctgcaggtcccgaagatgcacccaatctcatattaactgtaagcctcaacacattacaataagcccatatctttgatgaattg 11362659  T
Q  202 attgaggcatcaacaatatcct 223  Q
    ||||||||||||||||||||||    
T  11362660 attgaggcatcaacaatatcct 11362681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 109 - 289
Target Start/End: Original strand, 52918332 - 52918512
Alignment:
Q  109 tcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgattgagg 208  Q
    ||||||| |||| || |||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||| | |||||||||||||||||||||||    
T  52918332 tcttcctactctacaggtaccgaagatgcacccaatctcatattaacagtaagcctcaacacattacaataagctcgtatctttgatgaattgattgagg 52918431  T
Q  209 catcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    ||||||||||||||| ||| | |||||||| ||| ||  ||||||||| |||||||||||||| |||||||| ||||||||    
T  52918432 catcaacaatatcctccctcgatccttttcggactacatgcaatatctgcctgaaatcaccacctaaaactactgtcattc 52918512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 52918289 - 52918330
Alignment:
Q  27 ttctaccttcatttcaccattcttatccgaagcgtcgttgcc 68  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  52918289 ttctaccttcatttcaccattcccatccgaagcgtcgttgcc 52918330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 289
Target Start/End: Original strand, 186754 - 187040
Alignment:
Q  3 cgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaatta 102  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  186754 cgatatgagcaaatcttcaggaatttctaccttcatttcaccattctcatccgaagcgttgttgccgtctccaattgagagtatccacttgccaaaatta 186853  T
Q  103 gcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattga 202  Q
    |||||||||| |||||||||| |||||||||||||||| |||||||||||||||||| |||| ||  ||| |||||||||||||||||||||||||||||    
T  186854 gcaatttctttctgctctgcaagtaccgaagatgcacccaatctcatattaacagtaggccttaaaacattacaataagcccatatctttgatgaattga 186953  T
Q  203 ttgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||  |||||||||||||||| ||| |||||||||| |||||| |||||||||| | |||||||||||| |||||||| ||||||||    
T  186954 ttggtgcatcaacaatatcctgcctcgttccttttcggacaacaggcaatatctgcttgaaatcaccacctaaaactactgtcattc 187040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 289
Target Start/End: Complemental strand, 2453136 - 2452850
Alignment:
Q  3 cgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaatta 102  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||| || ||||||||    
T  2453136 cgatatgagcaaatcttcaggaatttctaccttcatttcaccattctcatttgaagcgtcgttgccgtctccaattgagagtatccacttgtcaaaatta 2453037  T
Q  103 gcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattga 202  Q
    ||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| || ||| |||||| ||| ||||||||||||||||||    
T  2453036 gcaatttcttcatgctctgcaggtaccgaagatgcacccaatctcatattaacagtaagcctcgacacattacaatatgcctatatctttgatgaattga 2452937  T
Q  203 ttgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||| |||||||||||||||| ||| | |||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||    
T  2452936 ttgaagcatcaacaatatcctgcctcgatccttttcggacaatgggcaatatcttcctgaaatcaccacctaaaactactgtcattc 2452850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 16042223 - 16042511
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    |||||||| |||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16042223 tccgatatcagcaaatcttcaggaatttctaccttcatttcaccattctcatccgaagcgtcgttgccgtctccaattgagagtatccacttgccaaaat 16042322  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    ||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||| ||| |||||||||| |||||||||| |||||    
T  16042323 tagcaatttcttcctgctctgcatgtaccgaagctgcacccaatctcatattaacagtaagcctcaacacattacaataagccaatatctttgacgaatt 16042422  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
     | |||||||||||||||||||  ||| ||||||  |  |||||| |||||||||| |||||||||||||| |||||||| ||||||||    
T  16042423 aactgaggcatcaacaatatccggcctcgttcctcctaggacaacaggcaatatctgcctgaaatcaccacgtaaaactactgtcattc 16042511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 289
Target Start/End: Original strand, 36207416 - 36207701
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    |||||||| ||||| ||||||  ||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||     
T  36207416 gatatgagaaaatcatcaggaatttctaccttcaattcaccattctcatccgaagcgtcgttgccgtcttcaattgagagtatccacttgccaaaattat 36207515  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    ||||||||||||||| |||| |||||||||||| ||| ||||||||||||||||||||||||||| ||| ||||||| | ||||||||||||||||||||    
T  36207516 caatttcttcctgctttgcaggtaccgaagatgaacccaatctcatattaacagtaagcctcaacacattacaataaactcatatctttgatgaattgat 36207615  T
Q  204 tgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    ||||||||||| |||||||| |||  |||||||||||||||| ||||||||||  ||||||||||||| |||||||| ||||||||    
T  36207616 tgaggcatcaataatatcctgcctctttccttttcagacaacaggcaatatctgtctgaaatcaccacctaaaactactgtcattc 36207701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 4 - 289
Target Start/End: Complemental strand, 48775353 - 48775068
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    ||||||||||||||||| |||  ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  48775353 gatatgagcaaatcttcgggaatttctaccttcatttcaccattctcattcgaagcgtcgttgccgtctccaattgagagtatccacttgccaaaattag 48775254  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    || |||||| |||||||| | || ||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||    
T  48775253 cagtttctttctgctctgtaggtcccgaagatgcacccaatctgatattaacagtaagcctcaacacattacaataagcccatatatttgatgaattgat 48775154  T
Q  204 tgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||||||||||||||||||| ||| |||||||||| ||||||   |||||| |  ||||||||||||| ||||||||  |||||||    
T  48775153 tgaggcatcaacaatatcctgcctcgttccttttcggacaacatacaatatttgtctgaaatcaccacctaaaactaccgtcattc 48775068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 3 - 289
Target Start/End: Original strand, 48233578 - 48233864
Alignment:
Q  3 cgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaatta 102  Q
    ||||||||| ||||||||||||  ||||||||||||||| ||||||| ||| |||||||||||| |||||| | |||||||||| ||| || ||||||||    
T  48233578 cgatatgagtaaatcttcaggaatttctaccttcatttccccattctcatctgaagcgtcgttgtcgtctcaagttgagagtattcacttgtcaaaatta 48233677  T
Q  103 gcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattga 202  Q
    | ||||||||||||||||||| ||||| |||||||||| |||||||||| ||||||||||||||||  || ||||||| | |||||||||||||||||||    
T  48233678 ggaatttcttcctgctctgcaggtaccaaagatgcacccaatctcatatcaacagtaagcctcaacaaattacaataaacacatatctttgatgaattga 48233777  T
Q  203 ttgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||||||||||||||||||||  || |||||||||| |||||| |||||||||| |||||||||||||| |||||||||||||||||    
T  48233778 ttgaggcatcaacaatatcctgtctcgttccttttcggacaacaggcaatatctgcctgaaatcaccacctaaaactattgtcattc 48233864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 4 - 289
Target Start/End: Complemental strand, 37390170 - 37389885
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    ||||| |||||||||||||||  ||||||||||||||||||||| | | ||||||| || ||||||||||||||||||| ||||||| ||| ||||||||    
T  37390170 gatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatctttgccgtctccaattgagaatatccacttgcaaaaattag 37390071  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||     
T  37390070 caatttcttcctgctctgcaggtaccgaagatgcacccaatctcatattaatagtaagcctcaacacattacaataagcccatatctttgacgaattgac 37389971  T
Q  204 tgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
     ||||||||||||||||||  ||| ||||||  || |||||| |||||||||| ||| |||||||||| |||||||||||||||||    
T  37389970 cgaggcatcaacaatatccagcctcgttcctcctcggacaacaggcaatatctgcctaaaatcaccacctaaaactattgtcattc 37389885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 2329364 - 2329641
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    ||||||||||| ||||||||||||  |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  2329364 tccgatatgagaaaatcttcaggaatttctaccttcattttaccattctcatccgaagcgtcgttgccgtctctaattgagagtatccacttgccaaaat 2329463  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    ||||||||||||||||||||||| ||| |||||| ||||| |||||||||||||||||||||||||||  || |||||||||||||||||||||||||||    
T  2329464 tagcaatttcttcctgctctgcaggtaacgaagaggcacccaatctcatattaacagtaagcctcaacatattacaataagcccatatctttgatgaatt 2329563  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaac 278  Q
    |||| |||||| ||||||||| | ||| ||| |||  | |||||| || | ||||| |||||||||||||| ||||||    
T  2329564 gattaaggcattaacaatatcgtgcctcgttgcttcacggacaacaggtagtatctgcctgaaatcaccacctaaaac 2329641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 4 - 285
Target Start/End: Complemental strand, 6311012 - 6310731
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    ||||| ||| |||||||||||  ||||||||||||||||||||| | | ||||||| ||||||||||||||||| |||| ||||||| ||| ||||||||    
T  6311012 gatatcagcgaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgccgtctccaatggagactatccacttgcaaaaattag 6310913  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||     
T  6310912 caatttcttcctgctctgcaggtaccgaagatgcacccaatctcatattaacagtaagcctcaacacattacaataagcccatatctttgacgaattgac 6310813  T
Q  204 tgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtc 285  Q
     |||||||||||||||||   |||  |||||  || |||||| | |||||||| ||| |||||||||| |||||||||||||    
T  6310812 cgaggcatcaacaatatcaggcctcattcctcctcggacaacagacaatatctgcctaaaatcaccacctaaaactattgtc 6310731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 52500795 - 52501063
Alignment:
Q  14 aatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattagcaatttcttc 113  Q
    |||||||||||  |||||||||||||| |||||||| ||||||||||| |||| ||||||||||| ||||||||||| |||| |||||       ||||     
T  52500795 aatcttcaggaatttctaccttcatttaaccattctcatccgaagcgttgttgtcgtctccaattcagagtatccacttgccgaaatt-------tcttt 52500887  T
Q  114 ctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgattgaggcatca 213  Q
    |||||||||| ||||| |||||||||| |||||||||||||||||||| |||||| ||| | ||||||| ||||||||||||||||||||||| ||||||    
T  52500888 ctgctctgcaggtaccaaagatgcacccaatctcatattaacagtaagtctcaacacattaaaataagcacatatctttgatgaattgattgatgcatca 52500987  T
Q  214 acaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||||||||| ||| |||||||||| ||||||  ||||||||| ||||| |||||||| |||||||||||||||||    
T  52500988 acaatatcctgcctcgttccttttcggacaacatgcaatatctgcctgatatcaccacctaaaactattgtcattc 52501063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 18148886 - 18149074
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    ||||||||||| |||||||||  |  |||||||||||||||||||||||  | ||||||||  ||||||||||||||| ||||||||||| |||||||||    
T  18148886 tccgatatgagaaaatcttcataaatttctaccttcatttcaccattctccttcgaagcgttattgccgtctccaattcagagtatccacttgccaaaat 18148985  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatc 189  Q
    |||||||||||| |||||||||| ||||| |||||||||| ||||||||||||||||||||||| ||| ||| | |||||| |||||||    
T  18148986 tagcaatttctttctgctctgcaggtaccaaagatgcacccaatctcatattaacagtaagccttaacacattaaaataagtccatatc 18149074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 289
Target Start/End: Complemental strand, 21070080 - 21069795
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| || |||||||||    
T  21070080 gatatgagcaaatcttcaggaatttctaccttcatttcaccattctcatccgaaacgtcgttgccgtctccaattgagagtatccacttgtcaaaattag 21069981  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    ||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||| |  ||| ||||||| ||||||||||| ||||||||||    
T  21069980 caatttctttctgctctgcaggtaccgaagatgcacccaatctcatattaacagtaagcctcgatacattacaataaacccatatctttaatgaattgat 21069881  T
Q  204 tgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    ||| |||||||||||||||| ||| |||||||||| |||||| |||||||||| |||||||||||||| |||||||| ||| ||||    
T  21069880 tgatgcatcaacaatatcctgcctcgttccttttcggacaacaggcaatatctacctgaaatcaccacctaaaactactgtgattc 21069795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 5828576 - 5828288
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||| ||| ||||||| |||||||||||||||| ||||||||||| |||||||||    
T  5828576 tccgatatgagcaaatcttcaggaatttctaccttcatttcaccattctcatctgaagcgttgttgccgtctccaattcagagtatccacttgccaaaat 5828477  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    |||||||||||| |||||||||| |||||||||||||||  ||||||||||||| ||||||||||||| ||| | ||||| |||||||||||||||||||    
T  5828476 tagcaatttctttctgctctgcaggtaccgaagatgcactcaatctcatattaatagtaagcctcaacacattaaaataaacccatatctttgatgaatt 5828377  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||||| |||||||||||||||| ||| |||||||||| |||||| |||||||||| |||||||||||||| |||||||| | ||||||    
T  5828376 gattgatgcatcaacaatatcctgcctcgttccttttcggacaacaggcaatatctgcctgaaatcaccacctaaaactaatatcattc 5828288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 9001166 - 9000878
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    |||||||| | |||||||||| ||  ||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| |||||||||    
T  9001166 tccgatatcaacaaatcttcaagaatttctaccttcatttcaccattctcatccgaagcatcgttgccgtatccaattgagagtatccacttgccaaaat 9001067  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    |||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  9001066 tagcaatttcttcctgctatgcaggtaccgaagatgcacccaatctcatattaacagtaagcctcaacacattacaataagcccatatctttgacgaatt 9000967  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    || |||||||||||||||||||  ||| ||||||  || |||||  |||||||||| ||| ||||||| || |||||||| ||||||||    
T  9000966 gactgaggcatcaacaatatccggcctcgttcctcctcggacaataggcaatatctgcctaaaatcacaacctaaaactactgtcattc 9000878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 4 - 289
Target Start/End: Original strand, 7036921 - 7037206
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    ||||| ||| |||||||||||  ||||||||||||||||||||| | | ||||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  7036921 gatatcagcgaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgccgtctccaattgagagtatccacttgcaaaaattag 7037020  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    |||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||| |||||||||| |||||||     
T  7037021 caatttcttcttgctctgcaggtaccgaagatgcacccaatctcatattaacagtaagcctcaacacattacaataagcctatatctttgacgaattgac 7037120  T
Q  204 tgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
     ||||||||||||||||||  ||| ||||||  || |||||| |||||||||| ||| |||||||||| |||||||| ||||||||    
T  7037121 cgaggcatcaacaatatccggcctcgttcctcctcggacaacaggcaatatctgcctaaaatcaccacctaaaactactgtcattc 7037206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 42232210 - 42232486
Alignment:
Q  14 aatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattagcaatttcttc 113  Q
    |||||||||||  ||||||||||||||||||||||| ||||||| ||| |||||||||||||||| ||||||||||| |||||||||||||||||||||     
T  42232210 aatcttcaggaatttctaccttcatttcaccattctcatccgaaccgttgttgccgtctccaattcagagtatccacttgccaaaattagcaatttcttt 42232309  T
Q  114 ctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgattgaggcatca 213  Q
    || ||||||| ||||| |||||||||| |||||||||||||||||||| |||||| ||| | ||||||| ||||||||||||||||||||||| ||||||    
T  42232310 ctactctgcaggtaccaaagatgcacccaatctcatattaacagtaagtctcaacacattaaaataagcacatatctttgatgaattgattgatgcatca 42232409  T
Q  214 acaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacat-aaaactattgtcattc 289  Q
    ||||||| || ||| |||||||||| |||||| |||||||||| ||||| |||||||| | ||||||||||||||||    
T  42232410 acaatatactgcctcgttccttttcggacaacaggcaatatctgcctgatatcaccacctaaaaactattgtcattc 42232486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 5 - 289
Target Start/End: Complemental strand, 12781165 - 12780881
Alignment:
Q  5 atatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattagc 104  Q
    |||| |||||||||||||||  ||||||||||||||||||||| | | ||||||| || ||| ||||||||||||||||||||||| ||| |||||||||    
T  12781165 atatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcattgtcgtctccaattgagagtatccacttgcaaaaattagc 12781066  T
Q  105 aatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgatt 204  Q
    ||||||||| |||||| || |||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| |||||||      
T  12781065 aatttcttcttgctctacaggtaccgaagatgcacccaatctcatattaacagtaagcctcaacacattacaataagctcatatctttgacgaattgacc 12780966  T
Q  205 gaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    ||||||||||||||||||  ||| ||||||  |  ||| || ||||| |||| ||| |||||||||| |||||||||||||||||    
T  12780965 gaggcatcaacaatatccggcctcgttcctccttggactacaggcaacatctgcctaaaatcaccacctaaaactattgtcattc 12780881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 4 - 285
Target Start/End: Original strand, 22844005 - 22844285
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    |||||||||||||||||| ||  |||||||||||||||||||| || |||||||||| ||||||| |||| |||| ||||||||||  ||||||||||||    
T  22844005 gatatgagcaaatcttcaagaatttctaccttcatttcaccat-ctcatccgaagcgacgttgccttctctaattaagagtatccaattgccaaaattag 22844103  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    |||||| |||||||||| || ||||| |||||||||| |||| |||||||||||||||||||||| ||| ||||||||| ||||||||||||||| ||||    
T  22844104 caatttattcctgctctacaggtaccaaagatgcacccaatcccatattaacagtaagcctcaacacattacaataagctcatatctttgatgaactgat 22844203  T
Q  204 tgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtc 285  Q
    |||||||||||||||||| | ||| |||||||||| ||  ||  ||||||||| | |||||||||||| ||||||| |||||    
T  22844204 tgaggcatcaacaatatcatgcctcgttccttttcggatgacatgcaatatctgcatgaaatcaccacctaaaacttttgtc 22844285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 12785996 - 12785790
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    ||||| |||||||||||||||  ||||||||||||||||||||| | | ||||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  12785996 gatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgccgtctccaattgagagtatccacttgcaaaaattag 12785897  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    |||||||||||||||||| | |||||||||||||| | |||           || |||||||||  ||| |||||||| |||||||||||| |||||||     
T  12785896 caatttcttcctgctctgtaggtaccgaagatgcatccaat-----------agcaagcctcaaaacattacaataagtccatatctttgacgaattgac 12785808  T
Q  204 tgaggcatcaacaatatc 221  Q
     |||||||||||||||||    
T  12785807 cgaggcatcaacaatatc 12785790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0550 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0550
Description:

Target: scaffold0550; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 4 - 280
Target Start/End: Complemental strand, 590 - 314
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    ||||| |||||||||||||||  |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  590 gatatcagcaaatcttcaggaatttctaccttcatttcatcattctcatccgaagcgtcgttgccgtctccaattgagagtatccacttgccaaaattag 491  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||| ||| ||||||||||||||||||||| ||||||||    
T  490 caatttcttcctgctctgcaggtaccgaagatgcacccaatctcatattaatagtaagcctcaacacattacaataagcccatatctttgacgaattgat 391  T
Q  204 tgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaacta 280  Q
    |||||||||||||||||||  ||| ||||||  || |||||| | |||||||| |||||||||||||| ||||||||    
T  390 tgaggcatcaacaatatccggccttgttcctcctcggacaacagacaatatctgcctgaaatcaccacctaaaacta 314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 32130 - 32418
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    |||||||| |||||||||||||||  ||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| |||||||||    
T  32130 tccgatatcagcaaatcttcaggaatttctaccttcatttcaccattctcatccgaagcatcgttgccgtatccaattgagagtatccacttgccaaaat 32229  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| |||||    
T  32230 tagcaatttcttcctgctctgcaggtaccgaagatgcacccaatctcatattaacagtaagcctcaacacattacaataagcacatatctttgacgaatt 32329  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    || ||||||||||||||||||   ||| ||||||  || |||||| |||||||||| |||||||||||||| |||||||| ||||||||    
T  32330 gactgaggcatcaacaatatctggcctcgttcctcgtcggacaacaggcaatatctgcctgaaatcaccacctaaaactactgtcattc 32418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 53 - 289
Target Start/End: Original strand, 1 - 237
Alignment:
Q  53 ccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatatt 152  Q
    ||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||    
T  1 ccgaagcatcgttgccgtctccaattgagagtatccacttgcaaaaattagcaatttcttcttgctctgcaggtaccgaagatgcacccaatctcatatt 100  T
Q  153 aacagtaagcctcaacgcataacaataagcccatatctttgatgaattgattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaat 252  Q
    |||||||||||||||  ||| |||||||||| |||| ||||| |||||||  ||| ||||||||||||||  ||| ||||||  || || ||  ||||||    
T  101 aacagtaagcctcaaaacattacaataagccaatatatttgacgaattgaccgagacatcaacaatatccggcctcgttcctcctcggaaaaaaggcaat 200  T
Q  253 atcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||| ||| |||||||||| |||||||| ||||||||    
T  201 atctgcctaaaatcaccacctaaaactactgtcattc 237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 21113765 - 21113477
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    |||||||| |||||||||||||||  ||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| |||||||||    
T  21113765 tccgatataagcaaatcttcaggaatttctaccttcatttcaccattctcatccgaagcgttgttgccgtctccaattcagagtatccacttgccaaaat 21113666  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    |||||||||||| |||||||||| ||||| |||||||||| |||| |||||||||||||||| ||||| ||| | ||||||| ||||||| |||||||||    
T  21113665 tagcaatttctttctgctctgcaggtaccaaagatgcacccaatcgcatattaacagtaagcgtcaacacattaaaataagcacatatctgtgatgaatt 21113566  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||||| |||||||||||||||| ||| |||||||||| |||||| |||||||||| ||||| |||||||| |||||||||||||||||    
T  21113565 gattgatgcatcaacaatatcctgcctcgttccttttcggacaacaggcaatatctgcctgatatcaccacctaaaactattgtcattc 21113477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 4 - 289
Target Start/End: Complemental strand, 25218583 - 25218298
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    ||||| |||||||||||||||  ||||||||||||||||||||| | | ||||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  25218583 gatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgccgtctccaattgagagtatccacttgcaaaaattag 25218484  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||     
T  25218483 caatttcttcctgctctgcaggtaccgaagatgcacccaatctcatattaacagtaagcctcaacacattacaataagcccatatctttgacgaattgac 25218384  T
Q  204 tgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
     ||||||||||||||||||  ||| ||||||  || |||||| |||||||||| ||| |||||||||| |||||||| ||||||||    
T  25218383 cgaggcatcaacaatatccggcctcgttcctcctcggacaacaggcaatatctgcctaaaatcaccacctaaaactactgtcattc 25218298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 10 - 289
Target Start/End: Complemental strand, 25209059 - 25208780
Alignment:
Q  10 agcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattagcaattt 109  Q
    |||||||||||||||  ||||||||||||||||||||| | | ||||||| |||||| ||||||||||||||||||||||| ||| |||||||| |||||    
T  25209059 agcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgtcgtctccaattgagagtatccacttgcaaaaattagtaattt 25208960  T
Q  110 cttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgattgaggc 209  Q
    | |||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||| ||| ||||||||| ||||||||||| |||||||  |||||    
T  25208959 cgtcctgctctgcaggtaccgaagatgcacccaatctcatattaacattaagcctcaacacattacaataagctcatatctttgacgaattgaccgaggc 25208860  T
Q  210 atcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||||||||||||  ||| ||||||  || || ||| |||||||||| ||| |||||||||| |||||||| ||||||||    
T  25208859 atcaacaatatccggcctcgttcctcctcggaaaacaggcaatatctgcctaaaatcaccacctaaaactactgtcattc 25208780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 4 - 289
Target Start/End: Original strand, 7822039 - 7822324
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    ||||| |||||||||||||||  ||||||||||||||||||||| | | ||||||| |||||| ||||||||||||||||||||||| | | |||||| |    
T  7822039 gatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgtcgtctccaattgagagtatccacttacaaaaattcg 7822138  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    ||||||||||||||||| || |||||||||||||||  ||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| |||||||     
T  7822139 caatttcttcctgctctacaggtaccgaagatgcactcaatctcatattaacagtaagcctcaacacattacaataagctcatatctttgacgaattgac 7822238  T
Q  204 tgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
     |||||||||||||||  |  ||| ||||||  || |||||  |||||||||| ||| |||||||||| |||||||| ||||||||    
T  7822239 cgaggcatcaacaataatcggcctcgttcctcctcggacaataggcaatatctgcctaaaatcaccacctaaaactactgtcattc 7822324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 30307375 - 30307575
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    |||||||| |||||||||||||||  |||||| |||||||||||||| | | ||||||| |||||| |||||||||||||||||||| || ||| |||||    
T  30307375 tccgatatcagcaaatcttcaggaatttctacattcatttcaccattgtcacccgaagcatcgttgtcgtctccaattgagagtatctacttgcaaaaat 30307474  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    ||||||||||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  30307475 tagcaatttcttcccactctgcaggtaccgaagatgcacccaatctcatattaacagtaagcctcaacacattacaataagcccatatctttgacgaatt 30307574  T
Q  201 g 201  Q
    |    
T  30307575 g 30307575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 289
Target Start/End: Original strand, 30325877 - 30325961
Alignment:
Q  205 gaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    ||||||||||||||||||  ||| ||||||  || |||||  |||||||||| ||| ||||||| || |||||||| ||||||||    
T  30325877 gaggcatcaacaatatccggcctcgttcctcctcggacaataggcaatatctgcctaaaatcacaacctaaaactactgtcattc 30325961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 1860875 - 1861163
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    ||||||||||||||||||| ||||  ||||||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||||||||| |||||||||    
T  1860875 tccgatatgagcaaatctttaggaatttctaccttcatttcaccattctcatccgaagcgttgttgtcgtctccaattcagagtatccacttgccaaaat 1860974  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    |||||||||||| |||||||||| ||||| |||||||||| ||||||||||||||||||||||||||| ||| | ||||||||||||||||| |||||||    
T  1860975 tagcaatttctttctgctctgcaggtaccaaagatgcacccaatctcatattaacagtaagcctcaacacattaaaataagcccatatctttaatgaatt 1861074  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||||| |||||||||||||||| ||| |||||||||| |||||| |||||||| | |||||||||||||| | | |||||||||||||    
T  1861075 gattgatgcatcaacaatatcctgcctcgttccttttcggacaacaggcaatatttgcctgaaatcaccaccttacactattgtcattc 1861163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 4 - 289
Target Start/End: Original strand, 35856108 - 35856393
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    ||||| |||||||||||||||  ||||||||||||||||||||| | | ||||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  35856108 gatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgccgtctccaattgagagtatccacttgcaaaaattag 35856207  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||     
T  35856208 caatttcttcctgctctgcaggtaccgaagatgcacccaatctcatattaacagtaagcctcaacacattacaataagcccatatctttgacgaattgac 35856307  T
Q  204 tgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
     ||||||||||||||||||  ||| ||||||  || |||||| |||||||||| ||| |||||||||| |||||||| ||||||||    
T  35856308 cgaggcatcaacaatatccggcctcgttcctcctcggacaacaggcaatatctgcctaaaatcaccacctaaaactactgtcattc 35856393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 14 - 289
Target Start/End: Complemental strand, 55559131 - 55558856
Alignment:
Q  14 aatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattagcaatttcttc 113  Q
    |||||||||||  ||||||||||||||||||||||| ||| ||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||     
T  55559131 aatcttcaggaatttctaccttcatttcaccattctcatctgaagcgttgttgccgtctccaattcagagtatccacttgccaaaattagcaatttcttt 55559032  T
Q  114 ctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgattgaggcatca 213  Q
    |||||||||| ||||| |||||||||| |||||||||||||||||||| |||||| ||| | ||||||| ||||||||||||||||||||||| ||||||    
T  55559031 ctgctctgcaggtaccaaagatgcacccaatctcatattaacagtaagtctcaacacattaaaataagcacatatctttgatgaattgattgatgcatca 55558932  T
Q  214 acaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    ||||||| || ||| |||||||||| |||||| |||||||||| ||||| |||||||| |||||||||||||||||    
T  55558931 acaatatactgcctcgttccttttcggacaacaggcaatatctgcctgatatcaccacctaaaactattgtcattc 55558856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 618245 - 617957
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||| ||| ||||| |||||| ||||||||||||||||||| ||| ||  |||||    
T  618245 tccgatatgagcaaatcttcaggaatttctaccttcatttcaccattctcatctgaagcttcgttgtcgtctccaattgagagtattcacttgttaaaat 618146  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    ||| |||||||||||||||||||  |||| |||||||||  ||||||||||||||||| |||||||||  || |||||||||| ||||||||||||||||    
T  618145 taggaatttcttcctgctctgcagataccaaagatgcactcaatctcatattaacagttagcctcaacaaattacaataagcctatatctttgatgaatt 618046  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    ||||||||||||||||||||| | ||| |||||||||||||||||  ||||||||| | |||||||||||| |||| ||||||||||||    
T  618045 gattgaggcatcaacaatatcatgcctcgttccttttcagacaacatgcaatatctgcttgaaatcaccacctaaagctattgtcattc 617957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 49710370 - 49710658
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    |||||||| |||||||||||||||  ||||||||||||||||||||| | ||||||||| |||||||||| ||||||||||||||||||| |||||||||    
T  49710370 tccgatatcagcaaatcttcaggaatttctaccttcatttcaccattttcatccgaagcatcgttgccgtgtccaattgagagtatccacttgccaaaat 49710469  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    |||||||||||| ||| |||||| |||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||| ||||||||| | |||||    
T  49710470 tagcaatttctttctgttctgcaggtaccgaagatgcacccaatctcatattaacagtaagcctcaacacattacaataagctcatatctttaacgaatt 49710569  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    ||  |||||||||||||||||   ||| ||||||  ||  ||||| |||||||||| ||| |||||||||| |||||||||||||||||    
T  49710570 gacggaggcatcaacaatatctggcctcgttcctcctcgaacaacaggcaatatctgcctaaaatcaccacctaaaactattgtcattc 49710658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 13337433 - 13337721
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    |||||||| |||||||||||| ||  ||||||||||||||||||||| | | ||||||| |||||| ||||||||||||||||||||||| ||| |||||    
T  13337433 tccgatatcagcaaatcttcatgaatttctaccttcatttcaccattgtcacccgaagcatcgttgtcgtctccaattgagagtatccacttgcaaaaat 13337532  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||| ||| |||||||   ||||||||||| |||||    
T  13337533 tagcaatttcttcctgctctgcaggtaccgaagatgcacccaatctcatattaacagtaaacctcaacacattacaataatatcatatctttgacgaatt 13337632  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    ||  ||||||||||||||||||  ||| ||||||  || |||||| |||||||||| ||| |||||||||| |||||||| ||||||||    
T  13337633 gaccgaggcatcaacaatatccggcctcgttcctcctcggacaacaggcaatatctgcctaaaatcaccacctaaaactactgtcattc 13337721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 4 - 280
Target Start/End: Original strand, 38518297 - 38518573
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    ||||| |||||||||||||||  ||||||||||||||||||||| | | || |||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  38518297 gatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccaaagcatcgttgccgtctccaattgagagtatccacttgcaaaaattag 38518396  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||     
T  38518397 caatttcttcctgctctgcaggtaccgaagatgcacccaatctcatattaacagtaagcctcaacacattacaataagcccatatctttgacgaattgac 38518496  T
Q  204 tgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaacta 280  Q
     ||||||| ||||||||||   || ||||||  ||||||||| |  ||||||| ||| |||||||||| ||||||||    
T  38518497 cgaggcattaacaatatccggtctcgttcctcctcagacaacagttaatatctgcctaaaatcaccacctaaaacta 38518573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 49786846 - 49786640
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    ||||| |||||||||||||||  ||||||||||||||||||||| | | ||||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  49786846 gatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgccgtctccaattgagagtatccacttgcaaaaattag 49786747  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    |||||||||||||||||| | |||||||||||||| | |||           || |||||||||  ||| |||||||| |||||||||||| |||||||     
T  49786746 caatttcttcctgctctgtaggtaccgaagatgcatccaat-----------agcaagcctcaaaacattacaataagtccatatctttgacgaattgac 49786658  T
Q  204 tgaggcatcaacaatatc 221  Q
     |||||||||||||||||    
T  49786657 cgaggcatcaacaatatc 49786640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 24269091 - 24268803
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| |||||||||    
T  24269091 tccgatatgagcaaatcttcaggaatttctaccttcatttcaccattctcatccgaagcgttgttgccgtctccaattcagagtatccacttgccaaaat 24268992  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    |||||||||||| |||||||||| ||||| |||||||||| |||| |||||||||| ||||| ||||| ||| | ||||||| ||||||| |||||||||    
T  24268991 tagcaatttctttctgctctgcaggtaccaaagatgcacccaatcgcatattaacaataagcgtcaacacattaaaataagcacatatctgtgatgaatt 24268892  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||||| |||||||||||||||| ||| |||||||||| |||||| |||||||||| ||||| |||||||| |||||||||||||||||    
T  24268891 gattgatgcatcaacaatatcctgcctcgttccttttcggacaacaggcaatatctgcctgatatcaccacctaaaactattgtcattc 24268803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 27192687 - 27192975
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    ||||||||||||||||||| ||||  ||||||||||||||||||||||| ||| ||||||||||||||||| ||| |||||||||||||| || ||||||    
T  27192687 tccgatatgagcaaatctttaggaatttctaccttcatttcaccattctcatctgaagcgtcgttgccgtcaccagttgagagtatccacttgtcaaaat 27192786  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    ||  |||||||||||||||| || ||| | |||||||||| ||||||||||||||| | |||||||||  || |||||||||||||||||||||||||||    
T  27192787 tatgaatttcttcctgctctacaggtatcaaagatgcacccaatctcatattaacaatcagcctcaacaaattacaataagcccatatctttgatgaatt 27192886  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    ||||||||||||||||||||||| ||| |||||||||| |||||| |||||||||| |||||||||||||| |||||||||||||||||    
T  27192887 gattgaggcatcaacaatatcctgcctcgttccttttcggacaacaggcaatatctgcctgaaatcaccacctaaaactattgtcattc 27192975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 27509572 - 27509860
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    ||||| ||||||||||||| ||||  |||||||||||| |||||||||| ||| ||||||||||||| ||||||||||||||||||| || |||||||||    
T  27509572 tccgacatgagcaaatctttaggaatttctaccttcatctcaccattctcatctgaagcgtcgttgctgtctccaattgagagtatctacttgccaaaat 27509671  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    ||||||||||||||||||||||| ||| | |||||||||| ||||| ||||||||||||||||||||  ||| |||||||||||||||||||||||||||    
T  27509672 tagcaatttcttcctgctctgcaggtagcaaagatgcacccaatcttatattaacagtaagcctcaatacattacaataagcccatatctttgatgaatt 27509771  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||||||||||||||||||||||  || |||||||||  |||||| |||||||||| |||||||||||||| |||||||| ||||||||    
T  27509772 gattgaggcatcaacaatatcctgtctcgttcctttttggacaacaggcaatatctgcctgaaatcaccacctaaaactactgtcattc 27509860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 27842501 - 27842789
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    ||||||||||||||||||| ||||  ||||||||||||||||||||||| ||| ||||||||||||||||| ||| |||||||||||||| || ||||||    
T  27842501 tccgatatgagcaaatctttaggaatttctaccttcatttcaccattctcatctgaagcgtcgttgccgtcaccagttgagagtatccacttgtcaaaat 27842600  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    ||  |||||||||||||||| || ||| | |||||||||| ||||||||||||||| | |||||||||  || |||||||||||||||||||||||||||    
T  27842601 tatgaatttcttcctgctctacaggtatcaaagatgcacccaatctcatattaacaatcagcctcaacaaattacaataagcccatatctttgatgaatt 27842700  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    ||||||||||||||||||||||| ||| |||||||||| |||||| |||||||||| |||||||||||||| |||||||||||||||||    
T  27842701 gattgaggcatcaacaatatcctgcctcgttccttttcggacaacaggcaatatctgcctgaaatcaccacctaaaactattgtcattc 27842789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 21395568 - 21395856
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    |||||||| |||||||||||||||  ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| ||||    
T  21395568 tccgatatcagcaaatcttcaggaatttctaccttcatttcaccattctcatccgaagcatcgttgccgtctccaattgagagtatccacttgccgaaat 21395667  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    |||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||| |||||| |||||    
T  21395668 tagcaatttcttcctgatctgcaggtaccgaagatgcacccaatctcatattaacagtaagcctcaacacattacaataagcccataactttgacgaatt 21395767  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    ||  ||||||||||||||||||  ||| ||||||  || |||||| |||||||||| ||| |||||||||| ||||||||  |||||||    
T  21395768 gacggaggcatcaacaatatccggcctcgttcctcctcggacaacaggcaatatctgcctaaaatcaccacctaaaactacggtcattc 21395856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 24246023 - 24246302
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    |||| |||||||||||||| ||||  ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||| ||    
T  24246023 tccgttatgagcaaatctttaggaatttctaccttcatttcaccattctcatccaaagcgtcgttgccgtctccaattgagagaatccacatgccaacat 24246122  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    ||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  24246123 tagcaatttcttcctgctctgcaggtaccgaagattcacc-aatctcatattaacagtaagcctcaacacattacaataagcccatatctttgatgaatt 24246221  T
Q  201 gattgaggcatcaacaatatcctacctagttcc-ttttcagacaacgggcaatatcttcctgaaatcaccacataaaacta 280  Q
    ||||||||||||||||||||||| | |  |||| ||||| ||||||  ||||||||| ||| |||||||||| ||||||||    
T  24246222 gattgaggcatcaacaatatcctgcatcattcctttttcggacaacatgcaatatctgccttaaatcaccacctaaaacta 24246302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 27 - 289
Target Start/End: Original strand, 35609877 - 35610139
Alignment:
Q  27 ttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattagcaatttcttcctgctctgcacgt 126  Q
    ||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  | ||    
T  35609877 ttctaccttcatttcaccattctgatccgaaacttcgttgccgtctccaattgagagtatccacttgccaaaattagcaatttcttcctgctctaaaggt 35609976  T
Q  127 accgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgattgaggcatcaacaatatcctacc 226  Q
    |||||||||||||| ||| ||||||||||||||||||||||| ||| | |||||| |||||||||| |||||||||||| ||||||||||||||||| ||    
T  35609977 accgaagatgcacccaatgtcatattaacagtaagcctcaacacattataataagtccatatctttaatgaattgattggggcatcaacaatatcctgcc 35610076  T
Q  227 tagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    | |||||||||| | |||| |||||||| | |||||||||||||| |||||| | ||||||||    
T  35610077 tcgttccttttcgggcaacaggcaatatatgcctgaaatcaccacctaaaacaactgtcattc 35610139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 5 - 254
Target Start/End: Complemental strand, 17683846 - 17683597
Alignment:
Q  5 atatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattagc 104  Q
    |||||||| ||| |||||||  |||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  17683846 atatgagcgaatattcaggaatttctaccttcattttaccattctcatctgaagcgtcgttgccgtctccaattgagagtatccacttgcaaaaattagc 17683747  T
Q  105 aatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgatt 204  Q
    |||||||||||||||| || ||| |||||||||||| ||||||||||||||| ||||||| ||| ||| ||||||||| |||||||||||||||||||||    
T  17683746 aatttcttcctgctctacaggtatcgaagatgcacccaatctcatattaacaataagccttaacacattacaataagctcatatctttgatgaattgatt 17683647  T
Q  205 gaggcatcaacaatatcctacctagttccttttcagacaacgggcaatat 254  Q
    ||||||||||||||||||| ||| |||||||||| ||||||  |||||||    
T  17683646 gaggcatcaacaatatcctgcctcgttccttttcggacaacaagcaatat 17683597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 131 - 282
Target Start/End: Original strand, 3642920 - 3643071
Alignment:
Q  131 aagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgattgaggcatcaacaatatcctacctagt 230  Q
    |||||||||| |||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  3642920 aagatgcacccaatctcatattaacagtaagcctcaacaaattacaataagcccatatctttgatgaattgattgaggcatcaacaatatcctgcctcgt 3643019  T
Q  231 tccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactatt 282  Q
    |||||||| | |||| |||||||||| |||||||||||||| ||||||||||    
T  3643020 tccttttcgggcaacaggcaatatctacctgaaatcaccacctaaaactatt 3643071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 28666190 - 28665984
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    ||||| |||||||||||||||  ||||||||||||||||||||| | | ||||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  28666190 gatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgccgtctccaattgagagtatccacttgcaaaaattag 28666091  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    |||||||||||||||||| | |||||||||||||| | |||           || |||||||||  ||| |||||||| |||||||||||| |||||||     
T  28666090 caatttcttcctgctctgtaggtaccgaagatgcatccaat-----------agcaagcctcaaaacattacaataagtccatatctttgacgaattgac 28666002  T
Q  204 tgaggcatcaacaatatc 221  Q
     |||||||||||||||||    
T  28666001 cgaggcatcaacaatatc 28665984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 37825024 - 37824818
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    ||||| |||||||||||||||  ||||||||||||||||||||| | | ||||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  37825024 gatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgccgtctccaattgagagtatccacttgcaaaaattag 37824925  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    |||||||||||||||||| | |||||||||||||| | |||           || |||||||||  ||| |||||||| |||||||||||| |||||||     
T  37824924 caatttcttcctgctctgtaggtaccgaagatgcatccaat-----------agcaagcctcaaaacattacaataagtccatatctttgacgaattgac 37824836  T
Q  204 tgaggcatcaacaatatc 221  Q
     |||||||||||||||||    
T  37824835 cgaggcatcaacaatatc 37824818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 41920191 - 41919986
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    ||||| |||||||||||||||  ||||||||||||||||||||| | | ||||||| |||||||||||||||||||||||||||||| ||| |||||||     
T  41920191 gatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgccgtctccaattgagagtatccacttgcaaaaattat 41920092  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    ||||||||||||||||| || ||||| |||||||| | |||           || |||||||||  ||| |||||||| |||||||||||| |||||||     
T  41920091 caatttcttcctgctctacaggtaccaaagatgcatccaat-----------agcaagcctcaaaacattacaataagtccatatctttgacgaattgac 41920003  T
Q  204 tgaggcatcaacaatat 220  Q
     ||||||||||||||||    
T  41920002 cgaggcatcaacaatat 41919986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 289
Target Start/End: Original strand, 183012 - 183297
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    ||||||||||||||||| |||  ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  183012 gatatgagcaaatcttcgggaatttctaccttcatttcaccattctcattcgaagcgtcgttgccgtctccaattgagagtatccacttgccaaaattag 183111  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    || ||||||||||||||||| || ||||||||||||| ||| |||||||||| |||||||||||| ||| |||||||| |||||||||||||||||||||    
T  183112 cagtttcttcctgctctgcaggtcccgaagatgcacccaatatcatattaactgtaagcctcaacacattacaataaggccatatctttgatgaattgat 183211  T
Q  204 tgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    ||| |||||||||||||||| |||  ||||||||| |||||| | |||||||| |||||||||||||| |||||||| | ||||||    
T  183212 tgatgcatcaacaatatcctgcctcattccttttcggacaacagacaatatctgcctgaaatcaccacctaaaactactatcattc 183297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 4 - 289
Target Start/End: Original strand, 165732 - 166019
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtat--ccacatgccaaaatt 101  Q
    |||||||| |||||||| |||  |||  |||||||||||||||||| || ||||||||||||| |||||||||||||||||||  |||| ||||||||||    
T  165732 gatatgagtaaatcttcgggaatttcccccttcatttcaccattctcattcgaagcgtcgttgtcgtctccaattgagagtatatccacttgccaaaatt 165831  T
Q  102 agcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattg 201  Q
    |||| ||| ||| ||||||||| || ||||||||||||| |||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||    
T  165832 agcagtttattcttgctctgcaggtcccgaagatgcacccaatctcatattaactgtaagcctcaacacattacaataagcccatatctttgatgaattg 165931  T
Q  202 attgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||||||||||||||||||||| ||| |||||||||| |||||| | |||||||| |||||||||||||| |||||||| | ||||||    
T  165932 attgaggcatcaacaatatcctgcctcgttccttttcggacaacagacaatatctgcctgaaatcaccacctaaaactactatcattc 166019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 3 - 289
Target Start/End: Complemental strand, 2202198 - 2201912
Alignment:
Q  3 cgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaatta 102  Q
    |||||||||||||||||| |||  |||||| |||||||||||||||| ||  |||||||||||||| ||||||||||||||||||||| |||||||||||    
T  2202198 cgatatgagcaaatcttcgggaatttctacattcatttcaccattctcatttgaagcgtcgttgccttctccaattgagagtatccacttgccaaaatta 2202099  T
Q  103 gcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattga 202  Q
    ||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| || ||| |||||| ||| ||||||||||||||||||    
T  2202098 gcaatttcttcatgctctgcaagtaccgaagatgcacccaatctcatattaacagtaagcctcgacacattacaatatgcctatatctttgatgaattga 2201999  T
Q  203 ttgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    | ||||||||||||||||||| ||| | |||||||| ||||| ||||||||||| |||||| ||||||| |||||||| ||||||||    
T  2201998 tcgaggcatcaacaatatcctgcctcgatccttttcggacaatgggcaatatctgcctgaagtcaccacctaaaactactgtcattc 2201912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 18344323 - 18344611
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||| ||||| ||| ||||| |||||| ||||||||||||||||||| ||| || ||||||    
T  18344323 tccgatatgagcaaatcttcaggaatttctaccttcatttcactattctcatctgaagcttcgttgtcgtctccaattgagagtattcacttgtcaaaat 18344422  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    ||| ||||||||||||||||| |  |||| |||||||||  |||||||||||||||||||||||||||  || |||||||||||||||||||||| ||||    
T  18344423 taggaatttcttcctgctctgtagataccaaagatgcactcaatctcatattaacagtaagcctcaacaaattacaataagcccatatctttgataaatt 18344522  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||||  ||||||||| |||||||||||||| |||||||||||||||||    
T  18344523 gattgaggcatcaacaatatcctgcctcgttccttttcggacaacatgcaatatctgcctgaaatcaccacctaaaactattgtcattc 18344611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 30881525 - 30881808
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    ||||||||||||||||||||||||  |||||||||||||||||||| || |||||||||| ||||||| |||| |||||||||||||||  |||||||||    
T  30881525 tccgatatgagcaaatcttcaggaatttctaccttcatttcaccat-ctcatccgaagcgccgttgccttctctaattgagagtatccatttgccaaaat 30881623  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    ||||||||| ||||||||||||| ||||| |||||||||| |||| |||||||||||||||||||||| ||| ||||||||| ||||||||||||||| |    
T  30881624 tagcaatttattcctgctctgcaggtaccaaagatgcacccaatcccatattaacagtaagcctcaacacattacaataagctcatatctttgatgaact 30881723  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtc 285  Q
    ||||||||||||||||||||| | ||| |||||||||| ||  ||  ||||||||| |||||||||||||| ||||||| |||||    
T  30881724 gattgaggcatcaacaatatcatgcctcgttccttttcggatgacatgcaatatctgcctgaaatcaccacctaaaacttttgtc 30881808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 5 - 244
Target Start/End: Original strand, 10187746 - 10187985
Alignment:
Q  5 atatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattagc 104  Q
    |||||||||||| |||||||  |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||| ||| |||||||||    
T  10187746 atatgagcaaatattcaggaatttctaccttcattttaccattctcatccgaagcgtcgttgccgtctccaattgagagcatccacgtgcgaaaattagc 10187845  T
Q  105 aatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgatt 204  Q
    |||||||||||||||| || ||| |||||||||||| ||||||||||||||| ||||||||||| ||| ||||||||| |||||||||||||||||||||    
T  10187846 aatttcttcctgctctacaggtatcgaagatgcacccaatctcatattaacaataagcctcaacacattacaataagctcatatctttgatgaattgatt 10187945  T
Q  205 gaggcatcaacaatatcctacctagttccttttcagacaa 244  Q
    |||||||||||||||||||  || |||||||||| |||||    
T  10187946 gaggcatcaacaatatcctgtctcgttccttttcggacaa 10187985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 51 - 289
Target Start/End: Original strand, 12517522 - 12517760
Alignment:
Q  51 atccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcata 150  Q
    |||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | || ||||||||||| |||||||||    
T  12517522 atccgaagtgtcgttgtcgtctccaattgagagtatccacttgccaaaattagcaatttcttcctgctctgcaggaacagaagatgcacccaatctcata 12517621  T
Q  151 ttaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgattgaggcatcaacaatatcctacctagttccttttcagacaacgggca 250  Q
    |||||||||||| ||||| ||| ||||||||||||||||||||| ||||| | |||||||||||||||||||  ||| ||||||  || |||||| ||||    
T  12517622 ttaacagtaagcttcaacacattacaataagcccatatctttgacgaattaactgaggcatcaacaatatccggcctcgttcctcctcggacaacaggca 12517721  T
Q  251 atatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||||| |||||||||||||| |||||||| ||||||||    
T  12517722 atatctgcctgaaatcaccacctaaaactactgtcattc 12517760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 3 - 179
Target Start/End: Original strand, 15333843 - 15334019
Alignment:
Q  3 cgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaatta 102  Q
    |||||| | |||||||||||||  ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15333843 cgatatcaacaaatcttcaggaatttctaccttcatttcactattctcatccgaagcgtcgttgccgtctccaattgagagtatccacttgccaaaatta 15333942  T
Q  103 gcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaata 179  Q
    ||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||||    
T  15333943 gcaatttcttcttgctctgcaggtatcgaagatgcacctaatctcatattaacagtaagcttcaacacattacaata 15334019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 111 - 256
Target Start/End: Original strand, 18814054 - 18814199
Alignment:
Q  111 ttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgattgaggca 210  Q
    |||||||||| || ||||| | |||||||| ||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| ||| |    
T  18814054 ttcctgctctacaggtaccaacgatgcacccaatctcatattaacagtaagcctcaacacattacaataagctcatatctttgatgaattgattaaggga 18814153  T
Q  211 tcaacaatatcctacctagttccttttcagacaacgggcaatatct 256  Q
    ||||||||||| |  || |||||||||| ||||||  |||||||||    
T  18814154 tcaacaatatcatgtctcgttccttttcggacaacatgcaatatct 18814199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 29640046 - 29639947
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    ||||| |||||||||||||||  ||||||||||||||||||||| | | ||||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  29640046 gatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgccgtctccaattgagagtatccacttgcaaaaattag 29639947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 31510217 - 31510118
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    ||||| |||||||||| || |  ||||||||||||||||||||| | | ||||| | |||||||||||||||||||||||||||||| ||| ||||||||    
T  31510217 gatatcagcaaatcttaagaaatttctaccttcatttcaccattgtcacccgaaacatcgttgccgtctccaattgagagtatccacttgcaaaaattag 31510118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 321357 - 321069
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    |||||||| |||||||||||||||  ||||||||||||||||||||| | | ||||||| |  |||||||||| |||||||| ||||||| ||| |||||    
T  321357 tccgatatcagcaaatcttcaggaatttctaccttcatttcaccattatcaaccgaagcataattgccgtctcaaattgagaatatccacttgcaaaaat 321258  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||| ||| |||||||||||||||| ||||||||||    
T  321257 tagcaatttcttcctgctctgcaggtaccgaagatgcacccaatctcatattaaaagtaagcctcaacacattacaataagcccatatcgttgatgaatt 321158  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||| |||||||||||||||||| ||| |||||||||| |||||| | |||||||| |||||||||||||| ||||||| |||||||||    
T  321157 gattaaggcatcaacaatatcctgcctcgttccttttcggacaacagacaatatctgcctgaaatcaccacctaaaactcttgtcattc 321069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 19204 - 19491
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    |||||||||||||||||||||| |  |||||||||||||||| |||||| ||||||||||| |||||||||||||||| | ||||||| | ||||||| |    
T  19204 tccgatatgagcaaatcttcagaaatttctaccttcatttcatcattctcatccgaagcgttgttgccgtctccaattcaaagtatccccttgccaaa-t 19302  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    |||||||||||| |||||||||| ||| | |||||||||| ||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||    
T  19303 tagcaatttctttctgctctgcaggtatcaaagatgcacccaatctcatattaacagtaagcctcaacacattaaaataagcccatatctttgatgaatt 19402  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||||| |||||||||||||||| ||| |||||||||| |||||| | |||||||| |||||||| ||||| |||||||||||||||||    
T  19403 gattgatgcatcaacaatatcctgcctcgttccttttcggacaacagacaatatctgcctgaaattaccacctaaaactattgtcattc 19491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 14 - 289
Target Start/End: Complemental strand, 28727 - 28452
Alignment:
Q  14 aatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattagcaatttcttc 113  Q
    |||||||||||  ||||||||||||||||||||||| ||||||||||| ||||| |||| ||||| ||||||||||| |||||||||||||||||||||     
T  28727 aatcttcaggaatttctaccttcatttcaccattctcatccgaagcgttgttgctgtcttcaattcagagtatccacttgccaaaattagcaatttcttt 28628  T
Q  114 ctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgattgaggcatca 213  Q
    |||||||||| ||||| |||||||| | |||||||||||||||||||| |||||| ||| | ||||||| ||||||||||||||||||||||| ||||||    
T  28627 ctgctctgcaggtaccaaagatgcatccaatctcatattaacagtaagtctcaactcattaaaataagcacatatctttgatgaattgattgatgcatca 28528  T
Q  214 acaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||||||||| ||| |||||||||| ||||||  ||||||||| ||||| |||||||| | |||||||||||||||    
T  28527 acaatatcctgcctcgttccttttcggacaacatgcaatatctgcctgatatcaccaccttaaactattgtcattc 28452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 5281 - 4993
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||| ||| ||||||  |||| ||||||||| | ||||||||||| |||||||||    
T  5281 tccgatatgagcaaatcttcaggaatttctaccttcatttcaccattctcatctgaagcgctgttgtcgtctccaagtcagagtatccacttgccaaaat 5182  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    |||||||||||| ||||| |||| ||| | |||||||||| ||||||||||||||||||||||||||| ||| | ||||||| ||||||||| |||||||    
T  5181 tagcaatttctttctgctttgcaggtatcaaagatgcacccaatctcatattaacagtaagcctcaacacattaaaataagcacatatcttttatgaatt 5082  T
Q  201 gattgaggcatcaacaatatcctacctagttccttttcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    |||||| |||||||||||||||| ||| ||||||||||  ||||  |||||||||| ||| |||||||||  |||||||||||||||||    
T  5081 gattgatgcatcaacaatatcctgcctcgttccttttcgaacaataggcaatatctgcctaaaatcaccatctaaaactattgtcattc 4993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 39954 - 40175
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    |||||||| |||||||||||| ||  ||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||||||||| ||| ||||||| |    
T  39954 tccgatatcagcaaatcttcaagaatttctacctttatttcaccattctcatccgaagcatcgttgccatctccaattgagagtattcacttgccaaagt 40053  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    ||||||||||||||||||||| | |||||||||||||||  ||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  40054 tagcaatttcttcctgctctgtaggtaccgaagatgcacacaatctcatattaacagtaagcctcaacacattacaataagcccatatctttgacgaatt 40153  T
Q  201 gattgaggcatcaacaatatcc 222  Q
    || |||||||||||||||||||    
T  40154 gactgaggcatcaacaatatcc 40175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1139 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: scaffold1139
Description:

Target: scaffold1139; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 1198 - 1418
Alignment:
Q  1 tccgatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaat 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||| |||||||||    
T  1198 tccgatatgagcaaatcttcaggaatttctaccttcatttcaccattctcatccgaagagtcgttgtcgtctccaattgagagtatccacttgccaaaat 1297  T
Q  101 tagcaatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaatt 200  Q
    ||| |||||||||||||| | || ||||| |||||||||| |||| |||||||||||||||||||||| ||| ||||||||| |||||||||||||||||    
T  1298 tagaaatttcttcctgctatacatgtacctaagatgcacccaatcccatattaacagtaagcctcaacacattacaataagctcatatctttgatgaatt 1397  T
Q  201 gattgaggcatcaacaatatc 221  Q
    |||||| |||| || ||||||    
T  1398 gattgatgcataaataatatc 1418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 48954 - 48748
Alignment:
Q  4 gatatgagcaaatcttcaggagcttctaccttcatttcaccattcttatccgaagcgtcgttgccgtctccaattgagagtatccacatgccaaaattag 103  Q
    ||||| |||||||||||||||  ||||||||||||||||||||| | | ||||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  48954 gatatcagcaaatcttcaggaatttctaccttcatttcaccattgtcacccgaagcatcgttgccgtctccaattgagagtatccacttgcaaaaattag 48855  T
Q  104 caatttcttcctgctctgcacgtaccgaagatgcacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgat 203  Q
    |||||||||||||||||| | |||||||||||||| | |||           || |||||||||  ||| |||||||| |||||||||||| |||||||     
T  48854 caatttcttcctgctctgtaggtaccgaagatgcatccaat-----------agcaagcctcaaaacattacaataagtccatatctttgacgaattgac 48766  T
Q  204 tgaggcatcaacaatatc 221  Q
     |||||||||||||||||    
T  48765 cgaggcatcaacaatatc 48748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 137 - 289
Target Start/End: Complemental strand, 14162 - 14010
Alignment:
Q  137 cacctaatctcatattaacagtaagcctcaacgcataacaataagcccatatctttgatgaattgattgaggcatcaacaatatcctacctagttccttt 236  Q
    |||| ||||||||||||| |||||||||||||  || | ||||||||||||| ||||||||||||||||| |||||||||||||| | ||| ||||||||    
T  14162 cacccaatctcatattaatagtaagcctcaacatattaaaataagcccatatatttgatgaattgattgatgcatcaacaatatcttgcctcgttccttt 14063  T
Q  237 tcagacaacgggcaatatcttcctgaaatcaccacataaaactattgtcattc 289  Q
    || |||||| |||||||||| |||||||||||||| |||||||||| ||||||    
T  14062 tcggacaacaggcaatatctgcctgaaatcaccacctaaaactattatcattc 14010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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