View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7547_high_1 (Length: 836)

Name: NF7547_high_1
Description: NF7547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7547_high_1
NF7547_high_1
[»] chr7 (1 HSPs)
chr7 (1-817)||(28525983-28526799)


Alignment Details
Target: chr7 (Bit Score: 809; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 809; E-Value: 0
Query Start/End: Original strand, 1 - 817
Target Start/End: Complemental strand, 28526799 - 28525983
Alignment:
Q  1 actattggtgcaatgttaccataccttgttcctagaaaggaaattgaagctgttggttttttagtagtgttaaggtagattctaatagctttacctgctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28526799 actattggtgcaatgttaccataccttgttcctagaaaggaaattgaagctgttggttttttagtagtgttaaggtagattctaatagctttacctgctg 28526700  T
Q  101 aagcacctaaggaagtagctggcaaaatgtgaggatcagaaagaagctcttcgccttgatttgcagagttgagtagtatcattccatatccacctgaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28526699 aagcacctaaggaagtagctggcaaaatgtgaggatcagaaagaagctcttcgccttgatttgcagagttgagtagtatcattccatatccacctgaatt 28526600  T
Q  201 tttaacttccgctcctttttcggttctaccattgattcctctttcacaaacaactatttttccaaaaacaagttttttatcaagtgagttttttgtgcag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28526599 tttaacttccgctcctttttcggttctaccattgattcctctttcacaaacaactatttttccaaaaacaagttttttatcaagtgagttttttgtgcag 28526500  T
Q  301 aatactgcttctctctttttacctgctgtttttccataaacaagtgggaattgttggtttggttcgttttttccttggtacaaagatgtgccttcaaaat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28526499 aatactgcttctctctttttacctgctgtttttccataaacaagtgggaattgttggtttggttcgttttttccttggtacaaagatgtgccttcaaaat 28526400  T
Q  401 tttttgagtttccaagttttacttttgttggaaaagttctgtcaatgtagctagcagcaactgtcatgatccatggtgcgccgtttcccaccgttgatgc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28526399 tttttgagtttccaagttttacttttgttggaaaagttctgtcaatgtagctagcagcaactgtcatgatccatggtgcgccgtttcccacagttgatgc 28526300  T
Q  501 aaaagggcctgagttgcctgctgagcaagaaacaaaaacaccgtttttcgttgctccaaatgaagctatagcaatactatcattataaaatggttttgga 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28526299 aaaagggcctgagttgcctgctgagcaagaaacaaaaacaccgtttttcgttgctccaaatgaagctatagcaatactatcattataaaatggttttgga 28526200  T
Q  601 atacttcctaaagatagtgatagtacatcaacaccatcagaaactgcttgatccatagctgctaacacgtctgaattcgcgcaaccagaaagccagcata 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28526199 atacttcctaaagatagtgatagtacatcaacaccatcagaaactgcttgatccatagctgctaacacgtctgaattcgcgcaaccagaaagccagcata 28526100  T
Q  701 ctttatacgctgcaattcttgaagtatacctcattccactagctgagcctctagcaagtccaaaaatgtttgcatttttcaccacactaccagccgtggt 800  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28526099 ctttatacgctgcaattcttgaagtatacctcattccactagctgagcctctagcaagtccaaaaatgtttgcatttttcaccacattaccagccgtggt 28526000  T
Q  801 cgaggcagtgtgcgttc 817  Q
    |||||||||||||||||    
T  28525999 cgaggcagtgtgcgttc 28525983  T

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