View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7547_high_12 (Length: 356)
Name: NF7547_high_12
Description: NF7547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7547_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 343
Target Start/End: Complemental strand, 54218514 - 54218189
Alignment:
| Q |
19 |
acagttacacacattcgttcaattttcaatttaatgaaatgcaaacagttgacatggcctgcattactgctactt-gattcattctacgaccactagagt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
54218514 |
acagttacacacattcgttcaattttcaatttaatgaaatgcaaacaattgacatggcctgcattactgctactttgattcattctacgaccactagagt |
54218415 |
T |
|
| Q |
118 |
ggcttcagataaatagagagttgtctttgcaagcaacaaaaggcacatccgtgaaaaataatcactcaaacgcaagtactatttataaagtgtgaattac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54218414 |
ggcttcagataaatagagagttgtctttgcaagcaacaaaaggcacatccgtgaaaaataatcactcaaacgcaagtactatttataaagtgtgaattac |
54218315 |
T |
|
| Q |
218 |
ggtccacttaggaggtcatggttatcatagtggtcattacgatccacactggtcactatagtagctgtgttatgctcctgcaattcggtttcagagccat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54218314 |
ggtccacttaggaggtcatggttatcatagtgatcattacgatccacactggtcactatagtagctgtgttatgctcctgcaattcggtttcagagccat |
54218215 |
T |
|
| Q |
318 |
catcatgtaacggcgaatgcacaggt |
343 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
54218214 |
catcatgtaacggcgaatgcacaggt |
54218189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University