View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7547_high_13 (Length: 348)
Name: NF7547_high_13
Description: NF7547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7547_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 15 - 333
Target Start/End: Complemental strand, 28146354 - 28146036
Alignment:
| Q |
15 |
tatcaacccctttgatcatacgcttgcattctccaatactacaatgatcaaatcctaaatttatcagaactctcttaagttccttagctgaaattaaacc |
114 |
Q |
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| T |
28146354 |
tatcaacccctttgatcatacgcttgcattctccaatactacaatgatcaaatcctaaatttatcagaactctcttaagttccttagctgaaattagacc |
28146255 |
T |
|
| Q |
115 |
attcttatcagtgtcaaagacatgaaaagcatccatgagatactcatcttgttccttgtcattggcacaaccaaacttgccttctttgtcatccataaca |
214 |
Q |
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| T |
28146254 |
attcttatcagtgtcaaagacatgaaaagcatccatgagatactcatcttgctccttgtcattggcacaaccaaacttgccttctttgtcatccataaca |
28146155 |
T |
|
| Q |
215 |
accatgaattcctccaaatctacaaacccatctccatttgagtccaaaacatttaccataccttcagcttctttagcagctatgctatctttgcatccca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28146154 |
accatgaattcctccaaatctacaaacccatctccatttgagtccaaaacatttaccataccttcagcttctttagcagctatgctatctttgcatccca |
28146055 |
T |
|
| Q |
315 |
aacatgaaagtaactcact |
333 |
Q |
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||||||||||||||||||| |
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| T |
28146054 |
aacatgaaagtaactcact |
28146036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 150
Target Start/End: Original strand, 13246069 - 13246204
Alignment:
| Q |
15 |
tatcaacccctttgatcatacgcttgcattctccaatactacaatgatcaaatcctaaatttatcagaactctcttaagttccttagctgaaattaaacc |
114 |
Q |
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||||||||||||| ||||||||||| || || | | |||||||| ||| | || | ||| | || ||||||| | | |||||||| ||| ||||| || |
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| T |
13246069 |
tatcaacccctttaatcatacgcttacaatcccttaaactacaattttcacaaccaagattaaccaaaactctcctcaattccttaggtgagattaatcc |
13246168 |
T |
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| Q |
115 |
attcttatcagtgtcaaagacatgaaaagcatccat |
150 |
Q |
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|||||||||| | ||||| ||| ||||||||||||| |
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| T |
13246169 |
attcttatcaatatcaaacacaagaaaagcatccat |
13246204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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