View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7547_high_20 (Length: 263)
Name: NF7547_high_20
Description: NF7547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7547_high_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 6814481 - 6814255
Alignment:
| Q |
16 |
tttcgtgttgattcatggatcttgccatggggcatggtgttggtacaaggttgttactttgttaaaatctgctggacacgatgtcacagcactagacatg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || || || |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6814481 |
tttcgtgttgattcatggatcttgccatggggcatggtgttggtacaagattattgctctgttaaaatctgctggacacgaagtcacagcactagacatg |
6814382 |
T |
|
| Q |
116 |
gctgcttctggaatccatccaaagcaagtgcatgagctggattctgtcacagattattgtgaaccgttgattgaatttctaaggtcactgccacaagatg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6814381 |
gctgcttctggaatccatccaaagcaagtgcatgagctggattctgtcacagattattatgaaccgttgattgaatttctaaggtcactgccacaagatc |
6814282 |
T |
|
| Q |
216 |
agagagttattctagtgggtcatagct |
242 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
6814281 |
agagagttattctagtgggtcatagct |
6814255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 6807696 - 6807470
Alignment:
| Q |
16 |
tttcgtgttgattcatggatcttgccatggggcatggtgttggtacaaggttgttactttgttaaaatctgctggacacgatgtcacagcactagacatg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || || || |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6807696 |
tttcgtgttgattcatggatcttgccatggggcatggtgttggtacaagattattgctctgttaaaatctgctggacacgaagtcacagcactagacatg |
6807597 |
T |
|
| Q |
116 |
gctgcttctggaatccatccaaagcaagtgcatgagctggattctgtcacagattattgtgaaccgttgattgaatttctaaggtcactgccacaagatg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6807596 |
gctgcttctggaatccatccaaagcaagtgcatgagctggattctgtcacatattattatgaaccgttgattgaatttctaaggtcactgcgacaagatc |
6807497 |
T |
|
| Q |
216 |
agagagttattctagtgggtcatagct |
242 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
6807496 |
agagagttattctagtgggtcatagct |
6807470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 6823678 - 6823452
Alignment:
| Q |
16 |
tttcgtgttgattcatggatcttgccatggggcatggtgttggtacaaggttgttactttgttaaaatctgctggacacgatgtcacagcactagacatg |
115 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
6823678 |
tttcgtgttggttcatggagcttgccatggggcatggtgttggtacaagataattactctgttaaaatctgctggacacgaagtcacatcactagacatg |
6823579 |
T |
|
| Q |
116 |
gctgcttctggaatccatccaaagcaagtgcatgagctggattctgtcacagattattgtgaaccgttgattgaatttctaaggtcactgccacaagatg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6823578 |
gctgcttctggaatccatccaaagcaagtgcatgagctggattctgtcacagattattatgaaccgttgattgaatttctaaggtcactgccacaagatc |
6823479 |
T |
|
| Q |
216 |
agagagttattctagtgggtcatagct |
242 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
6823478 |
agagagttattctagtgggtcatagct |
6823452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 1769024 - 1768923
Alignment:
| Q |
40 |
ccatggggcatggtgttggtacaaggttgttactttgttaaaatctgctggacacgatgtcacagcactagacatggctgcttctggaatccatccaaag |
139 |
Q |
| |
|
|||||| |||||||||||||| ||||||| ||| ||||||| ||||| || | ||||||||||||||||||||||||| ||| | | |||||||| |
|
|
| T |
1769024 |
ccatggtgcatggtgttggtataaggttgcaactgatctaaaatcagctggtcataaagtcacagcactagacatggctgcttgtggtaccaatccaaag |
1768925 |
T |
|
| Q |
140 |
ca |
141 |
Q |
| |
|
|| |
|
|
| T |
1768924 |
ca |
1768923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University