View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7547_high_3 (Length: 581)

Name: NF7547_high_3
Description: NF7547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7547_high_3
NF7547_high_3
[»] chr4 (22 HSPs)
chr4 (16-575)||(2883568-2884127)
chr4 (338-466)||(2901137-2901271)
chr4 (175-301)||(18628506-18628643)
chr4 (16-79)||(2900837-2900900)
chr4 (139-208)||(54325104-54325173)
chr4 (140-208)||(30338659-30338727)
chr4 (139-237)||(7749120-7749218)
chr4 (139-208)||(46013367-46013436)
chr4 (165-226)||(43372016-43372079)
chr4 (267-310)||(19429414-19429457)
chr4 (141-208)||(21953209-21953276)
chr4 (263-302)||(44320028-44320067)
chr4 (139-202)||(46247152-46247215)
chr4 (154-208)||(927425-927479)
chr4 (142-208)||(18630617-18630683)
chr4 (263-301)||(42461330-42461368)
chr4 (139-208)||(21593079-21593147)
chr4 (171-208)||(39931371-39931408)
chr4 (139-208)||(41606120-41606189)
chr4 (257-301)||(2996646-2996690)
chr4 (171-203)||(19429560-19429592)
chr4 (263-307)||(51560236-51560280)
[»] chr5 (16 HSPs)
chr5 (144-258)||(28586781-28586897)
chr5 (141-203)||(37063146-37063208)
chr5 (155-208)||(14295456-14295509)
chr5 (139-208)||(19177413-19177482)
chr5 (258-301)||(7907956-7907999)
chr5 (257-300)||(13244505-13244548)
chr5 (141-208)||(16889671-16889738)
chr5 (139-189)||(7096213-7096263)
chr5 (257-311)||(10907451-10907505)
chr5 (90-202)||(20982208-20982317)
chr5 (90-182)||(26516186-26516275)
chr5 (171-208)||(583840-583877)
chr5 (171-208)||(32059656-32059693)
chr5 (139-208)||(35135729-35135798)
chr5 (156-212)||(29116993-29117049)
chr5 (142-255)||(32172590-32172705)
[»] chr8 (19 HSPs)
chr8 (257-307)||(7918728-7918778)
chr8 (265-307)||(1664450-1664492)
chr8 (90-188)||(14482090-14482185)
chr8 (139-257)||(38036128-38036248)
chr8 (259-307)||(9700076-9700124)
chr8 (177-258)||(11795064-11795147)
chr8 (265-307)||(1889082-1889124)
chr8 (171-238)||(6509338-6509407)
chr8 (155-258)||(11183495-11183600)
chr8 (263-309)||(42215035-42215081)
chr8 (266-307)||(24326113-24326154)
chr8 (139-208)||(34770826-34770895)
chr8 (139-260)||(35298490-35298614)
chr8 (257-301)||(2487961-2488005)
chr8 (156-208)||(4763869-4763921)
chr8 (263-307)||(16162839-16162883)
chr8 (263-307)||(29169883-29169927)
chr8 (145-189)||(39392747-39392791)
chr8 (267-307)||(43393719-43393759)
[»] scaffold0053 (1 HSPs)
scaffold0053 (139-207)||(20113-20181)
[»] scaffold0199 (1 HSPs)
scaffold0199 (265-307)||(6891-6933)
[»] chr6 (15 HSPs)
chr6 (139-257)||(32386579-32386699)
chr6 (257-307)||(32917270-32917320)
chr6 (139-208)||(5550066-5550135)
chr6 (139-187)||(2456886-2456933)
chr6 (141-208)||(29274296-29274363)
chr6 (257-327)||(4308642-4308712)
chr6 (138-207)||(507153-507222)
chr6 (139-208)||(2514636-2514705)
chr6 (139-208)||(4006648-4006717)
chr6 (139-208)||(10452427-10452496)
chr6 (139-196)||(24774692-24774749)
chr6 (257-293)||(836498-836534)
chr6 (172-208)||(9326923-9326959)
chr6 (263-307)||(10353708-10353752)
chr6 (257-301)||(27857431-27857475)
[»] chr3 (18 HSPs)
chr3 (139-208)||(20192673-20192742)
chr3 (155-260)||(24887296-24887403)
chr3 (139-205)||(27792806-27792872)
chr3 (265-307)||(45590732-45590774)
chr3 (171-257)||(23785221-23785309)
chr3 (163-208)||(31337468-31337513)
chr3 (155-207)||(49586984-49587036)
chr3 (154-258)||(34954032-34954137)
chr3 (171-258)||(1816549-1816638)
chr3 (257-310)||(37273207-37273260)
chr3 (143-208)||(40122820-40122884)
chr3 (257-306)||(49772616-49772665)
chr3 (139-207)||(1395605-1395673)
chr3 (171-260)||(2201094-2201185)
chr3 (257-289)||(21574563-21574595)
chr3 (139-207)||(41028919-41028987)
chr3 (263-307)||(44014745-44014789)
chr3 (235-300)||(46759059-46759126)
[»] chr2 (20 HSPs)
chr2 (139-208)||(10143106-10143175)
chr2 (267-310)||(757532-757575)
chr2 (141-208)||(13866825-13866892)
chr2 (139-208)||(37053528-37053597)
chr2 (257-330)||(41905840-41905913)
chr2 (171-244)||(36863654-36863729)
chr2 (141-208)||(5133708-5133775)
chr2 (139-206)||(28803575-28803642)
chr2 (139-185)||(12215741-12215787)
chr2 (139-234)||(18962077-18962174)
chr2 (263-301)||(37474844-37474882)
chr2 (90-233)||(42974240-42974378)
chr2 (171-208)||(7103550-7103587)
chr2 (165-255)||(11513858-11513950)
chr2 (139-208)||(33192127-33192196)
chr2 (260-300)||(10190342-10190382)
chr2 (263-307)||(11513975-11514019)
chr2 (155-207)||(14209227-14209279)
chr2 (142-206)||(17952770-17952834)
chr2 (172-257)||(36415689-36415776)
[»] chr7 (20 HSPs)
chr7 (139-203)||(7243578-7243642)
chr7 (257-307)||(23214928-23214978)
chr7 (139-258)||(28165025-28165146)
chr7 (257-310)||(22387840-22387893)
chr7 (139-208)||(31002695-31002764)
chr7 (268-312)||(5288195-5288239)
chr7 (142-189)||(2176846-2176893)
chr7 (267-310)||(10079283-10079326)
chr7 (139-208)||(5373159-5373228)
chr7 (257-327)||(30535636-30535706)
chr7 (141-203)||(31341130-31341192)
chr7 (139-205)||(33894557-33894622)
chr7 (139-208)||(3610807-3610876)
chr7 (139-208)||(9527157-9527226)
chr7 (155-208)||(30456517-30456570)
chr7 (171-208)||(31338474-31338511)
chr7 (144-204)||(1417203-1417263)
chr7 (139-207)||(24975838-24975906)
chr7 (171-203)||(46531499-46531531)
chr7 (144-208)||(49060479-49060543)
[»] chr1 (20 HSPs)
chr1 (263-305)||(49282548-49282590)
chr1 (156-208)||(15360845-15360897)
chr1 (220-256)||(52190146-52190182)
chr1 (139-208)||(4363699-4363767)
chr1 (171-257)||(4548687-4548775)
chr1 (143-208)||(17420141-17420206)
chr1 (266-327)||(28467515-28467576)
chr1 (257-310)||(31517684-31517737)
chr1 (266-307)||(32515388-32515429)
chr1 (171-208)||(40833902-40833939)
chr1 (263-300)||(44422778-44422815)
chr1 (139-208)||(45999355-45999424)
chr1 (263-307)||(4033964-4034008)
chr1 (220-260)||(7472328-7472368)
chr1 (144-208)||(15565899-15565963)
chr1 (257-309)||(17420276-17420328)
chr1 (172-208)||(28788605-28788641)
chr1 (263-307)||(38170637-38170681)
chr1 (263-307)||(43371838-43371882)
chr1 (156-208)||(52286629-52286681)
[»] scaffold0590 (1 HSPs)
scaffold0590 (139-189)||(1160-1210)
[»] scaffold0275 (1 HSPs)
scaffold0275 (139-189)||(2765-2815)


Alignment Details
Target: chr4 (Bit Score: 548; Significance: 0; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 16 - 575
Target Start/End: Complemental strand, 2884127 - 2883568
Alignment:
Q  16 cattccccaccatagtgtcagcacatacatccaatcccaaaagctacataattttcaagtaaattagaccatgtataaacaatttaattgagagcttata 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2884127 cattccccaccatagtgtcagcacatacatccaatcccaaaagctacataattttcaagtaaattagaccatgtataaataatttaattgagagcttata 2884028  T
Q  116 acataagtacttgtcatattactagtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctatactgattt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2884027 acataagtacttgtcatattactagtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctatactgattt 2883928  T
Q  216 gatgagctatcatggagagcttacgaaaagaagctgaaaacagttgatttcataagctctcccaaacagtctcataagtgtttatgctagtaaattaatt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2883927 gatgagctatcatggagagcttacgaaaagaagctgaaaacagttgatttcataagctctcccaaacagtctcataactgtttatgctagtaaattaatt 2883828  T
Q  316 aatataagtcaaatccagatagactctaaataccttgtgactgtattgcataaataatcttacaaaacttttaaagaatgagagaatctcaatttggcaa 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2883827 aatataagtcaaatccagatagactctaaataccttgtgactgtattgcataaataatcttacaaaacttttaaagaatgagaaaatctcaatttggcaa 2883728  T
Q  416 tacctttagtacataatcagttgctacactttcctgttggcctccagttgccattgcctgtatatccaaagtcaatagaatgtgttaatatttattgcct 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2883727 tacctttagtacataatcagttgctacactttcctgttggcctccagttgccattgcctgtatatccaaagtcaatagaatgtgttaatatttattgcct 2883628  T
Q  516 tagaattaatttcattaacttgttttgttgcaataaatgttgataattgcttcttctcac 575  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2883627 tagaattaatttcattaacttgttttgttgcaataaatgttgataattgcttcttctcac 2883568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 338 - 466
Target Start/End: Original strand, 2901137 - 2901271
Alignment:
Q  338 actctaaataccttgtgactgtattgcataaataatcttacaaaacttttaaagaatgagagaatctcaatttggc------aatacctttagtacataa 431  Q
    |||||||||||||||||||| || | |||| | ||||||| | ||||| |||||||| ||||| ||||  ||||||      |||||||||||||||||     
T  2901137 actctaaataccttgtgactttacttcatagacaatcttaaagaacttgtaaagaataagagagtctcgttttggctgtgctaatacctttagtacatag 2901236  T
Q  432 tcagttgctacactttcctgttggcctccagttgc 466  Q
    || ||| | ||||||||||||||||||||||||||    
T  2901237 tctgttaccacactttcctgttggcctccagttgc 2901271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 175 - 301
Target Start/End: Complemental strand, 18628643 - 18628506
Alignment:
Q  175 aaaataaagtcaaacagtttttatataagctata--ctgatttgatgagctatcatggagagcttacgaaaagaagctgaaaaca---------gttgat 263  Q
    |||||| |||||||| ||||||||||||| ||||  ||| ||| || || |||| ||||||||||| | ||| ||||||||||||         |||| |    
T  18628643 aaaatatagtcaaactgtttttatataagttataaactgttttcataagttatcttggagagcttatggaaataagctgaaaacaacttcataagttgtt 18628544  T
Q  264 ttcataagctctcccaaacagtctcataagtgtttatg 301  Q
    |||||||||||||||||||||||||| |||||||||||    
T  18628543 ttcataagctctcccaaacagtctcacaagtgtttatg 18628506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 2900837 - 2900900
Alignment:
Q  16 cattccccaccatagtgtcagcacatacatccaatcccaaaagctacataattttcaagtaaat 79  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||  || |||||||| |||||    
T  2900837 cattccccaccatagtatcagcacatacatccaaccccaaaagctgtatgattttcaattaaat 2900900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 54325173 - 54325104
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    ||||||| |||||| |||||||| |  |||| ||||||||||||||||||| ||||| ||||||||||||    
T  54325173 agtgcttgtgtataaactatttctattacaaaagataaaataaagtcaaactgttttcatataagctata 54325104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 30338727 - 30338659
Alignment:
Q  140 gtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    ||||||||||||| |||||||| | ||||| ||||| |||||||| |||| ||||| ||||||||||||    
T  30338727 gtgcttatgtataaactatttctataacaaaagatagaataaagttaaactgttttcatataagctata 30338659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 237
Target Start/End: Complemental strand, 7749218 - 7749120
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctatactgatttgatgagctatcatggagagctt 237  Q
    |||| |||||||||| ||||||| | || || ||| |||||||| || |||  ||||||||||| ||| |||||||| || ||||||| ||||||||||    
T  7749218 agtgtttatgtatacgctatttctataataaaagagaaaataaaatcgaactatttttatataaactaaactgatttcataagctatcttggagagctt 7749120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 46013436 - 46013367
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    |||| |||||| || ||||||||   ||||| ||||||||||||||||||| ||||||||||||| ||||    
T  46013436 agtgtttatgtgtaaactatttctggaacaaaagataaaataaagtcaaactgtttttatataagttata 46013367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 43372079 - 43372016
Alignment:
Q  165 aacaacagataaaataaagtcaaacagtttttatataagctat--actgatttgatgagctatc 226  Q
    ||||| |||||||||| |||||||| |||||||||||||||||  |||||||| || |||||||    
T  43372079 aacaaaagataaaatacagtcaaactgtttttatataagctataaactgatttcataagctatc 43372016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 310
Target Start/End: Complemental strand, 19429457 - 19429414
Alignment:
Q  267 ataagctctcccaaacagtctcataagtgtttatgctagtaaat 310  Q
    ||||||||||||||||||||||| |||||||||| | |||||||    
T  19429457 ataagctctcccaaacagtctcacaagtgtttataccagtaaat 19429414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 21953209 - 21953276
Alignment:
Q  141 tgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    |||| ||||||| |||||||| | ||||| ||  |||||||||||||||  |||||||||||||||||    
T  21953209 tgctcatgtataaactatttctataacaaaagggaaaataaagtcaaactctttttatataagctata 21953276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 302
Target Start/End: Original strand, 44320028 - 44320067
Alignment:
Q  263 tttcataagctctcccaaacagtctcataagtgtttatgc 302  Q
    ||||||||||||||||||||||||||| || |||||||||    
T  44320028 tttcataagctctcccaaacagtctcacaattgtttatgc 44320067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 46247152 - 46247215
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataa 202  Q
    |||| |||||| || ||||||||   ||||| ||||||||||||||||||| ||||||||||||    
T  46247152 agtgtttatgtgtaaactatttctggaacaaaagataaaataaagtcaaactgtttttatataa 46247215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 927425 - 927479
Alignment:
Q  154 actatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    |||||||| || |||| |||| |||||||||||||| ||||| ||||||||||||    
T  927425 actatttctaatacaaaagatgaaataaagtcaaactgttttcatataagctata 927479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 18630617 - 18630683
Alignment:
Q  142 gcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    ||||||| ||| |||||||| | ||||| |||||||||||||||||   ||||| ||||||||||||    
T  18630617 gcttatgcataaactatttcaataacaaaagataaaataaagtcaattggttttcatataagctata 18630683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 301
Target Start/End: Original strand, 42461330 - 42461368
Alignment:
Q  263 tttcataagctctcccaaacagtctcataagtgtttatg 301  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  42461330 tttcataagttctcccaaacagtctcataagtgcttatg 42461368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 21593147 - 21593079
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    |||||||||||||| |||||||| | ||| | ||||||||||||||| |||  |||| ||||||||||||    
T  21593147 agtgcttatgtataaactatttctataactaaagataaaataaagtc-aactattttcatataagctata 21593079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 39931408 - 39931371
Alignment:
Q  171 agataaaataaagtcaaacagtttttatataagctata 208  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  39931408 agataaaataaagtcaaacattttttatgtaagctata 39931371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 41606120 - 41606189
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    |||| ||||||| | ||||||| || |||||  |||||||||||||||||  ||| ||||||||||||||    
T  41606120 agtgtttatgtaaaaactattttgataacaaaggataaaataaagtcaaatggttcttatataagctata 41606189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 2996646 - 2996690
Alignment:
Q  257 agttgatttcataagctctcccaaacagtctcataagtgtttatg 301  Q
    ||||| |||||||||||||| |||||||||||| ||||| |||||    
T  2996646 agttgttttcataagctctctcaaacagtctcaaaagtgcttatg 2996690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 19429592 - 19429560
Alignment:
Q  171 agataaaataaagtcaaacagtttttatataag 203  Q
    ||||||||||||||||||| |||||||||||||    
T  19429592 agataaaataaagtcaaactgtttttatataag 19429560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 51560280 - 51560236
Alignment:
Q  263 tttcataagctctcccaaacagtctcataagtgtttatgctagta 307  Q
    ||||||||| ||||||||| ||||||||||||| |||||| ||||    
T  51560280 tttcataaggtctcccaaagagtctcataagtgcttatgccagta 51560236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 144 - 258
Target Start/End: Complemental strand, 28586897 - 28586781
Alignment:
Q  144 ttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata--ctgatttgatgagctatcatggagagcttacga 241  Q
    |||||||||||||||||| | ||||| ||||||||||||||||||| ||||| ||||||  ||||  ||| ||||| |||||||| | |||||||||       
T  28586897 ttatgtatacactatttctataacaaaagataaaataaagtcaaactgttttcatataaattataagctgttttgacgagctatcctagagagcttatcg 28586798  T
Q  242 aaagaagctgaaaacag 258  Q
    ||| |||||||||||||    
T  28586797 aaataagctgaaaacag 28586781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 37063208 - 37063146
Alignment:
Q  141 tgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataag 203  Q
    |||||||||||| |||||||| | ||||| |||||||||||||||||||  |||| |||||||    
T  37063208 tgcttatgtataaactatttctataacaaaagataaaataaagtcaaactattttcatataag 37063146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 14295456 - 14295509
Alignment:
Q  155 ctatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    ||||||| | ||||| ||||||||||||||||||| ||||| ||||||||||||    
T  14295456 ctatttctataacaaaagataaaataaagtcaaactgttttcatataagctata 14295509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 19177413 - 19177482
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    |||||||||||||| |||||||| | ||||  ||||||||| ||||| ||| ||||| ||||||||||||    
T  19177413 agtgcttatgtataaactatttctacaacagaagataaaattaagtctaactgttttcatataagctata 19177482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 301
Target Start/End: Original strand, 7907956 - 7907999
Alignment:
Q  258 gttgatttcataagctctcccaaacagtctcataagtgtttatg 301  Q
    |||| ||||||||| ||| |||||||||||||||||||||||||    
T  7907956 gttgttttcataagttcttccaaacagtctcataagtgtttatg 7907999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 300
Target Start/End: Complemental strand, 13244548 - 13244505
Alignment:
Q  257 agttgatttcataagctctcccaaacagtctcataagtgtttat 300  Q
    ||||| ||||||||||||| ||||||||| ||||||||||||||    
T  13244548 agttgttttcataagctcttccaaacagtgtcataagtgtttat 13244505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 16889671 - 16889738
Alignment:
Q  141 tgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    ||||||||||||  ||||||| | ||||| ||||||| | ||||||||| ||||||||| ||||||||    
T  16889671 tgcttatgtataagctatttccataacaaaagataaacttaagtcaaactgtttttatagaagctata 16889738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 7096263 - 7096213
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaac 189  Q
    ||||||||||||||  ||||||| | ||||| |||||||||||||||||||    
T  7096263 agtgcttatgtataagctatttctataacaaaagataaaataaagtcaaac 7096213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 10907451 - 10907505
Alignment:
Q  257 agttgatttcataagctctcccaaacagtctcataagtgtttatgctagtaaatt 311  Q
    ||||| ||||||||||||| ||||||||||||| ||||||| |||| | ||||||    
T  10907451 agttgttttcataagctcttccaaacagtctcacaagtgttcatgccaataaatt 10907505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 202
Target Start/End: Complemental strand, 20982317 - 20982208
Alignment:
Q  90 ataaacaatttaattgagagcttataacataagtacttgtcatattactagtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaac 189  Q
    |||||||| || ||| || ||||||| ||||||| ||| |||||| |   |||||||||||||  ||||||| | |||||  |||||||||||||||| |    
T  20982317 ataaacaacttcattaagtgcttatagcataagtgcttatcatataa---gtgcttatgtataagctatttctataacaaaggataaaataaagtcaacc 20982221  T
Q  190 agtttttatataa 202  Q
     ||||| ||||||    
T  20982220 cgttttcatataa 20982208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 26516186 - 26516275
Alignment:
Q  90 ataaacaatttaattgagagcttataacataagtacttgtcatattactagtgcttatgtatacactatttcgaaaacaacagataaaataaa 182  Q
    |||||||| |||||| || ||||||| ||||||  ||| |||||| |   |||||||||||||  ||||||| ||||||| ||||||||||||    
T  26516186 ataaacaacttaattaagcgcttatagcataagcgcttatcatataa---gtgcttatgtataagctatttctaaaacaaaagataaaataaa 26516275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 583877 - 583840
Alignment:
Q  171 agataaaataaagtcaaacagtttttatataagctata 208  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  583877 agataaaataaagtcaaactgttttcatataagctata 583840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 32059693 - 32059656
Alignment:
Q  171 agataaaataaagtcaaacagtttttatataagctata 208  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  32059693 agataaaataaagtcaaactgttttcatataagctata 32059656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 35135798 - 35135729
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    |||| |||||||||   |||||| | ||||| |||||||||||||||||||  |||| ||||||||||||    
T  35135798 agtgtttatgtataagatatttctataacaaaagataaaataaagtcaaactattttcatataagctata 35135729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 29117049 - 29116993
Alignment:
Q  156 tatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctatactga 212  Q
    |||||| | ||||| ||||||||||||||||||| |||||  |||||||||| ||||    
T  29117049 tatttctataacaaaagataaaataaagtcaaactgttttcgtataagctatcctga 29116993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 255
Target Start/End: Original strand, 32172590 - 32172705
Alignment:
Q  142 gcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata--ctgatttgatgagctatcatggagagcttac 239  Q
    ||||||||||| |||||||| | ||||| ||||||||| |||||||   ||||  ||||||||||||  ||| ||| || |||||||||| ||| || |     
T  32172590 gcttatgtataaactatttctacaacaaaagataaaatgaagtcaagttgtttacatataagctataagctgttttcataagctatcatgaagaactaat 32172689  T
Q  240 gaaaagaagctgaaaa 255  Q
    | ||| ||||||||||    
T  32172690 ggaaataagctgaaaa 32172705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 7918778 - 7918728
Alignment:
Q  257 agttgatttcataagctctcccaaacagtctcataagtgtttatgctagta 307  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  7918778 agttgttttcataagctctcccaaacagtctcacaagtgtttatgctagta 7918728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 265 - 307
Target Start/End: Original strand, 1664450 - 1664492
Alignment:
Q  265 tcataagctctcccaaacagtctcataagtgtttatgctagta 307  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  1664450 tcataagctctcccaaacagtctcacaagtgtttatgctagta 1664492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 188
Target Start/End: Original strand, 14482090 - 14482185
Alignment:
Q  90 ataaacaatttaattgagagcttataacataagtacttgtcatattactagtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaa 188  Q
    ||||||||||||||| ||  |||||| ||| ||| ||| |||||| |   ||||||||||||| |||||||| | ||||| ||||||||||||||||||    
T  14482090 ataaacaatttaattaagttcttatagcattagtgcttatcatataa---gtgcttatgtataaactatttctataacaaaagataaaataaagtcaaa 14482185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 139 - 257
Target Start/End: Complemental strand, 38036248 - 38036128
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata--ctgatttgatgagctatcatggagagct 236  Q
    |||||||||||||| |||||||    ||||| | |||||||||| |||||  |||||| | |||||||||  ||| |||||| ||||||| |||||||||    
T  38036248 agtgcttatgtataaactatttatttaacaaaaaataaaataaattcaaattgtttttgtgtaagctataaactgttttgattagctatcttggagagct 38036149  T
Q  237 tacgaaaagaagctgaaaaca 257  Q
    ||   ||| ||||||||||||    
T  38036148 tattgaaataagctgaaaaca 38036128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 9700076 - 9700124
Alignment:
Q  259 ttgatttcataagctctcccaaacagtctcataagtgtttatgctagta 307  Q
    ||||||||| |||||||| |||| ||||||| |||||||||||||||||    
T  9700076 ttgatttcacaagctctctcaaatagtctcacaagtgtttatgctagta 9700124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 11795064 - 11795147
Alignment:
Q  177 aataaagtcaaacagtttttatataagctata--ctgatttgatgagctatcatggagagcttacgaaaagaagctgaaaacag 258  Q
    |||||||||| || ||||| ||||||| ||||  ||||||| || |||||| |||||||||||| | ||| |||||||||||||    
T  11795064 aataaagtcacactgttttcatataagttataagctgatttcataagctattatggagagcttatggaaataagctgaaaacag 11795147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 307
Target Start/End: Complemental strand, 1889124 - 1889082
Alignment:
Q  265 tcataagctctcccaaacagtctcataagtgtttatgctagta 307  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||    
T  1889124 tcataagctttcccaaacagtctcaaaagtgtttatgccagta 1889082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 6509407 - 6509338
Alignment:
Q  171 agataaaataaagtcaaacagtttttatataagctata--ctgatttgatgagctatcatggagagctta 238  Q
    ||||||||||||||||||  || |||||||||||||||  ||| ||| || ||||||| |||||||||||    
T  6509407 agataaaataaagtcaaattgtatttatataagctataagctgttttcataagctatcctggagagctta 6509338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 258
Target Start/End: Original strand, 11183495 - 11183600
Alignment:
Q  155 ctatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata--ctgatttgatgagctatcatggagagcttacgaaaagaagctga 252  Q
    ||||||| |||||||||||||||| |||||||||| ||  | |||| |||||||  ||| ||| |  ||||| | ||||||||||| | ||| |||||||    
T  11183495 ctatttctaaaacaacagataaaacaaagtcaaactgtcctcatattagctataagctgttttcacaagctaccctggagagcttatggaaataagctga 11183594  T
Q  253 aaacag 258  Q
    ||||||    
T  11183595 aaacag 11183600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 42215081 - 42215035
Alignment:
Q  263 tttcataagctctcccaaacagtctcataagtgtttatgctagtaaa 309  Q
    ||||||||| ||||||||||||| ||| ||||| |||||||||||||    
T  42215081 tttcataagttctcccaaacagtgtcacaagtgcttatgctagtaaa 42215035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 24326113 - 24326154
Alignment:
Q  266 cataagctctcccaaacagtctcataagtgtttatgctagta 307  Q
    |||||||||||||||||||||||| ||||| |||||| ||||    
T  24326113 cataagctctcccaaacagtctcacaagtgcttatgccagta 24326154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 34770826 - 34770895
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    |||||||||||| | |||||||| |  |||| ||||||||||||||||||  ||||| || |||||||||    
T  34770826 agtgcttatgtaaaaactatttccattacaaaagataaaataaagtcaaattgttttcatttaagctata 34770895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 260
Target Start/End: Complemental strand, 35298614 - 35298490
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttt-tatataagctata--ctgatttgatgagctatcatggagagc 235  Q
    ||||||||||||||  |||||||   ||||| ||||||||||||| |||||||||||  |||||| |||||   || ||| || ||||||||||| ||||    
T  35298614 agtgcttatgtataagctatttcagtaacaaaagataaaataaagccaaacagttttcaatataaactataagttgttttcataagctatcatggtgagc 35298515  T
Q  236 ttacgaaaagaagctgaaaacagtt 260  Q
     |||  ||| |||||||||| ||||    
T  35298514 ctacataaataagctgaaaatagtt 35298490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 2488005 - 2487961
Alignment:
Q  257 agttgatttcataagctctcccaaacagtctcataagtgtttatg 301  Q
    ||||| ||||||||| ||||||||||||||||| ||||| |||||    
T  2488005 agttgttttcataagttctcccaaacagtctcacaagtgcttatg 2487961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 4763869 - 4763921
Alignment:
Q  156 tatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    |||||||| ||||| |||||||||||| |||||| ||||| | ||||||||||    
T  4763869 tatttcgacaacaaaagataaaataaattcaaaccgttttcacataagctata 4763921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 16162839 - 16162883
Alignment:
Q  263 tttcataagctctcccaaacagtctcataagtgtttatgctagta 307  Q
    ||||||||| | || |||||||||||| |||||||||||||||||    
T  16162839 tttcataagttttctcaaacagtctcacaagtgtttatgctagta 16162883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 29169927 - 29169883
Alignment:
Q  263 tttcataagctctcccaaacagtctcataagtgtttatgctagta 307  Q
    ||||||||||||||||||||| | ||| ||||| |||||||||||    
T  29169927 tttcataagctctcccaaacaatttcacaagtgcttatgctagta 29169883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 39392791 - 39392747
Alignment:
Q  145 tatgtatacactatttcgaaaacaacagataaaataaagtcaaac 189  Q
    |||||||| |||||||| | ||||| |||||||||||||||||||    
T  39392791 tatgtataaactatttctataacaaaagataaaataaagtcaaac 39392747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 43393759 - 43393719
Alignment:
Q  267 ataagctctcccaaacagtctcataagtgtttatgctagta 307  Q
    ||||||||||||||||||||||| |||||||| ||| ||||    
T  43393759 ataagctctcccaaacagtctcaaaagtgtttttgcaagta 43393719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 20113 - 20181
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctat 207  Q
    |||||||||||||| |||||||| | ||| | ||||||||||||||||||||||| | |||||||||||    
T  20113 agtgcttatgtatatactatttctataaccaaagataaaataaagtcaaacagttatcatataagctat 20181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 265 - 307
Target Start/End: Original strand, 6891 - 6933
Alignment:
Q  265 tcataagctctcccaaacagtctcataagtgtttatgctagta 307  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  6891 tcataagctctcccaaacagtctcacaagtgtttatgctagta 6933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 257
Target Start/End: Complemental strand, 32386699 - 32386579
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctatac--tgatttgatgagctatcatggagagct 236  Q
    |||||||||||||| ||||||||   || || ||||||||||| ||||||  ||||| ||||||| |||||  || ||| || || |||| |||||||||    
T  32386699 agtgcttatgtatagactatttcactaagaaaagataaaataaggtcaaattgttttcatataaggtatacgttgttttcattagttatcctggagagct 32386600  T
Q  237 tacgaaaagaagctgaaaaca 257  Q
    || ||||| ||||||||||||    
T  32386599 tatgaaaataagctgaaaaca 32386579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 32917270 - 32917320
Alignment:
Q  257 agttgatttcataagctctcccaaacagtctcataagtgtttatgctagta 307  Q
    ||||| || |||||||||||||||||||||||| |||||||||| ||||||    
T  32917270 agttgtttccataagctctcccaaacagtctcacaagtgtttattctagta 32917320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 5550066 - 5550135
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    |||||||||||||| | |||||||| || || |||||| |||||||||||  ||||| ||||||||||||    
T  5550066 agtgcttatgtatatagtatttcgataataagagataacataaagtcaaattgttttcatataagctata 5550135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 2456886 - 2456933
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaa 187  Q
    |||||||||||||| |||||||||| ||||| |||||||||||||||||    
T  2456886 agtgcttatgtataaactatttcgataacaa-agataaaataaagtcaa 2456933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 29274363 - 29274296
Alignment:
Q  141 tgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    ||||||||||||  ||||||| | | ||| ||||||||||||||||||  ||||| ||||||||||||    
T  29274363 tgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctata 29274296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 327
Target Start/End: Original strand, 4308642 - 4308712
Alignment:
Q  257 agttgatttcataagctctcccaaacagtctcataagtgtttatgctagtaaattaattaatataagtcaa 327  Q
    ||||| ||||||||| ||||||||||||| |||  |||| |||||| |||||||||| | | |||||||||    
T  4308642 agttgttttcataagttctcccaaacagtgtcactagtgcttatgccagtaaattaactcaaataagtcaa 4308712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 507153 - 507222
Alignment:
Q  138 tagtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctat 207  Q
    ||||||||||||||| | |||||| | ||||| |||||||||||||| | |  |||||| ||||||||||    
T  507153 tagtgcttatgtataaattatttctataacaaaagataaaataaagttagattgtttttgtataagctat 507222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 2514636 - 2514705
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    ||||||||||||||  ||||||| | || || |||||||||||||||||||   |||||||| |||||||    
T  2514636 agtgcttatgtataagctatttctataataaaagataaaataaagtcaaactaattttatatgagctata 2514705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 4006648 - 4006717
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    |||||||||| |||   |||||| | |||||  |||||||||||||||||  ||||||||||||||||||    
T  4006648 agtgcttatgcataagatatttctataacaaatgataaaataaagtcaaattgtttttatataagctata 4006717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 10452496 - 10452427
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    ||||||||||||||  ||||||| | ||||| | |||||||||| ||||||  |||| ||||||||||||    
T  10452496 agtgcttatgtataagctatttctataacaaaatataaaataaaatcaaactattttcatataagctata 10452427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 24774692 - 24774749
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagttttt 196  Q
    ||||||||| |||| |||||||| | ||||| | ||||||||||||||||| ||||||    
T  24774692 agtgcttatatataaactatttctataacaaaatataaaataaagtcaaactgttttt 24774749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 836534 - 836498
Alignment:
Q  257 agttgatttcataagctctcccaaacagtctcataag 293  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  836534 agttgttttcataagttctcccaaacagtctcataag 836498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 9326923 - 9326959
Alignment:
Q  172 gataaaataaagtcaaacagtttttatataagctata 208  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  9326923 gatataataaagtcaaactgtttttatataagctata 9326959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 10353752 - 10353708
Alignment:
Q  263 tttcataagctctcccaaacagtctcataagtgtttatgctagta 307  Q
    ||||| ||||||||||||||||||||| ||||| ||||| |||||    
T  10353752 tttcacaagctctcccaaacagtctcacaagtgcttatgttagta 10353708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 27857431 - 27857475
Alignment:
Q  257 agttgatttcataagctctcccaaacagtctcataagtgtttatg 301  Q
    ||||| ||||||||||||||||||||||| ||| |||||| ||||    
T  27857431 agttgttttcataagctctcccaaacagtttcacaagtgtctatg 27857475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 20192742 - 20192673
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    ||||||||||||||  ||||||  | ||||| ||||||||||||||||||||||||| |||||| |||||    
T  20192742 agtgcttatgtataagctatttatataacaaaagataaaataaagtcaaacagttttcatataatctata 20192673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 260
Target Start/End: Complemental strand, 24887403 - 24887296
Alignment:
Q  155 ctatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata--ctgatttgatgagctatcatggagagcttacgaaaagaagctga 252  Q
    ||||||| | ||||| ||||||||||||||||||| || || |||||||||| |  ||| ||| || ||||||| ||||||||||| |  || |||||||    
T  24887403 ctatttctataacaatagataaaataaagtcaaactgtattcatataagctaaaagctgttttcataagctatcctggagagcttatgggaataagctga 24887304  T
Q  253 aaacagtt 260  Q
    ||||||||    
T  24887303 aaacagtt 24887296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 27792806 - 27792872
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagct 205  Q
    ||||||||||||||  ||||||| ||||||| ||||||||||| |||||||  |||| |||||||||    
T  27792806 agtgcttatgtataagctatttcaaaaacaaaagataaaataaggtcaaactattttcatataagct 27792872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 307
Target Start/End: Original strand, 45590732 - 45590774
Alignment:
Q  265 tcataagctctcccaaacagtctcataagtgtttatgctagta 307  Q
    ||||||||||||||||||||||||| ||||| |||||||||||    
T  45590732 tcataagctctcccaaacagtctcacaagtgcttatgctagta 45590774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 171 - 257
Target Start/End: Original strand, 23785221 - 23785309
Alignment:
Q  171 agataaaataaagtcaaacagtttttatataagctat--actgatttgatgagctatcatggagagcttacgaaaagaagctgaaaaca 257  Q
    ||||||||||||||||||| || || |||||||||||  |||| ||| |  |||| |||||||||||||| | ||| ||||||||||||    
T  23785221 agataaaataaagtcaaactgtattcatataagctataaactgttttcacaagctctcatggagagcttatggaaacaagctgaaaaca 23785309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 31337513 - 31337468
Alignment:
Q  163 aaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    ||||||| ||||||||||||||||||| ||||||||||||| ||||    
T  31337513 aaaacaaaagataaaataaagtcaaactgtttttatataagttata 31337468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 49587036 - 49586984
Alignment:
Q  155 ctatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctat 207  Q
    ||||||| | ||||| ||||||||||||||||||| ||||| |||||||||||    
T  49587036 ctatttctataacaaaagataaaataaagtcaaactgttttcatataagctat 49586984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 258
Target Start/End: Original strand, 34954032 - 34954137
Alignment:
Q  154 actatttcgaaaacaacagataaaataaagtcaaacagtttttatataagct--atactgatttgatgagctatcatggagagcttacgaaaagaagctg 251  Q
    |||||||| | ||||  ||||||||||||||||| | ||||| |||||| ||  |||||| ||| || | |||||||||| |||||| ||||| ||||||    
T  34954032 actatttctataacacaagataaaataaagtcaagctgttttcatataatctgtatactgtttt-ataacctatcatggatagcttatgaaaataagctg 34954130  T
Q  252 aaaacag 258  Q
    |||||||    
T  34954131 aaaacag 34954137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 1816549 - 1816638
Alignment:
Q  171 agataaaataaagtcaaacagtttttatataagctata--ctgatttgatgagctatcatggagagcttacgaaaagaagctgaaaacag 258  Q
    ||||||||||||||||||| |||||| |||||| ||||   || ||| || ||||||  |||||||||||  |||| |||||||||||||    
T  1816549 agataaaataaagtcaaactgtttttgtataagatataagttgttttcataagctatactggagagcttatcaaaataagctgaaaacag 1816638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 37273207 - 37273260
Alignment:
Q  257 agttgatttcataagctctcccaaacagtctcataagtgtttatgctagtaaat 310  Q
    ||||| || ||||||||||||||||||||||||  |||| |||||||| |||||    
T  37273207 agttgtttccataagctctcccaaacagtctcaccagtgcttatgctaataaat 37273260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 40122884 - 40122820
Alignment:
Q  143 cttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    ||||||||||  ||||||| | ||||| ||||||||||||||||||| ||||| ||| ||||||||    
T  40122884 cttatgtataagctatttcaataacaaaagataaaataaagtcaaactgttttcata-aagctata 40122820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 49772665 - 49772616
Alignment:
Q  257 agttgatttcataagctctcccaaacagtctcataagtgtttatgctagt 306  Q
    ||||| || |||||||||||| |||||||||||  |||||||||||||||    
T  49772665 agttgtttccataagctctcctaaacagtctcactagtgtttatgctagt 49772616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 1395605 - 1395673
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctat 207  Q
    ||||| ||||||||  ||||||| | ||||| ||||||||||||||||||   |||| |||||||||||    
T  1395605 agtgcatatgtataagctatttctataacaaaagataaaataaagtcaaattattttcatataagctat 1395673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 171 - 260
Target Start/End: Original strand, 2201094 - 2201185
Alignment:
Q  171 agataaaataaagtcaaacagtttttatataagctata--ctgatttgatgagctatcatggagagcttacgaaaagaagctgaaaacagtt 260  Q
    |||||||| |||||||||| ||||| ||||||||||||  ||| ||| || ||||||| |||| || ||| | ||| |||||||||| ||||    
T  2201094 agataaaacaaagtcaaactgttttcatataagctataagctgttttcattagctatcttggatagtttaaggaaaaaagctgaaaagagtt 2201185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 21574563 - 21574595
Alignment:
Q  257 agttgatttcataagctctcccaaacagtctca 289  Q
    ||||| |||||||||||||||||||||||||||    
T  21574563 agttgttttcataagctctcccaaacagtctca 21574595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 41028987 - 41028919
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctat 207  Q
    ||||||||||||||  ||||||| | ||||| ||| ||||||||||||| | ||||| | |||||||||    
T  41028987 agtgcttatgtataagctatttctataacaaaagaaaaaataaagtcaatctgttttcaaataagctat 41028919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 44014789 - 44014745
Alignment:
Q  263 tttcataagctctcccaaacagtctcataagtgtttatgctagta 307  Q
    ||||||||| | || |||||||||||| |||||||||||||||||    
T  44014789 tttcataagttttctcaaacagtctcacaagtgtttatgctagta 44014745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 46759126 - 46759059
Alignment:
Q  235 cttacgaaaagaagctgaaaac--agttgatttcataagctctcccaaacagtctcataagtgtttat 300  Q
    |||| ||||| |||||||||||  ||||| || |||||||||||| ||||||||||| ||||| ||||    
T  46759126 cttatgaaaataagctgaaaacggagttgcttccataagctctcctaaacagtctcacaagtgcttat 46759059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 10143106 - 10143175
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    ||||||||||||||   |||||| | ||||| ||||||||| ||||||||| ||||||||||||||||||    
T  10143106 agtgcttatgtataagttatttctataacaaaagataaaattaagtcaaactgtttttatataagctata 10143175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 267 - 310
Target Start/End: Original strand, 757532 - 757575
Alignment:
Q  267 ataagctctcccaaacagtctcataagtgtttatgctagtaaat 310  Q
    |||||| ||||||||||||||||||||| |||||||||||||||    
T  757532 ataagccctcccaaacagtctcataagtatttatgctagtaaat 757575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 13866825 - 13866892
Alignment:
Q  141 tgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    |||||||||||| |||||||| | | ||| ||||||||| ||||||||| |||||||||||| |||||    
T  13866825 tgcttatgtataaactatttctatagcaaaagataaaattaagtcaaactgtttttatataatctata 13866892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 37053528 - 37053597
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    |||||||||||||| |||||||| | ||||  | ||||||||||||||||| ||||| ||||||| ||||    
T  37053528 agtgcttatgtatagactatttctataacagaaaataaaataaagtcaaactgttttcatataagttata 37053597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 257 - 330
Target Start/End: Complemental strand, 41905913 - 41905840
Alignment:
Q  257 agttgatttcataagctctcccaaacagtctcataagtgtttatgctagtaaattaattaatataagtcaaatc 330  Q
    ||||| |||||||||||||| | || |||||||||||||||||||| | ||||| | || | ||||||||||||    
T  41905913 agttgttttcataagctctctcgaagagtctcataagtgtttatgcaaataaataagttcaaataagtcaaatc 41905840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 36863729 - 36863654
Alignment:
Q  171 agataaaataaagtcaaacagtttttatataagctat--actgatttgatgagctatcatggagagcttacgaaaa 244  Q
    |||||||||||||||||||| |||||||||||| |||  | || ||| || ||||||| ||||||||||| |||||    
T  36863729 agataaaataaagtcaaacaatttttatataagttataaattgttttcataagctatcttggagagcttatgaaaa 36863654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 5133708 - 5133775
Alignment:
Q  141 tgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    ||||||||||||  ||||||| | ||||| |||||||||||||  |||| ||||||||||||| ||||    
T  5133708 tgcttatgtataagctatttctataacaaaagataaaataaagataaactgtttttatataagatata 5133775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 28803642 - 28803575
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagcta 206  Q
    ||||||||| ||||   |||||||| ||||| ||||||||||||||||||| | ||| ||||||||||    
T  28803642 agtgcttatatataagttatttcgataacaaaagataaaataaagtcaaactgatttcatataagcta 28803575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 12215741 - 12215787
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtc 185  Q
    |||||||||||||| |||||||| | ||||| |||||||||||||||    
T  12215741 agtgcttatgtataaactatttctacaacaaaagataaaataaagtc 12215787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 18962174 - 18962077
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctat--actgatttgatgagctatcatggagag 234  Q
    |||||||||||||   ||||||  | ||||| |||||||||||||| |||| ||||| |||||||||||  |||  ||| || |||||||||||||||    
T  18962174 agtgcttatgtattagctatttttataacaaaagataaaataaagttaaactgttttcatataagctataaactattttcataagctatcatggagag 18962077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 301
Target Start/End: Original strand, 37474844 - 37474882
Alignment:
Q  263 tttcataagctctcccaaacagtctcataagtgtttatg 301  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  37474844 tttcataagctctctcaaagagtctcataagtgtttatg 37474882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 42974240 - 42974378
Alignment:
Q  90 ataaacaatttaattgagagcttataacataagtacttgtcatattactagtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaac 189  Q
    |||| ||| |||||| |||||||||| |||||  |||| ||||||||   |||||| |||||| |||||||| | ||||| || | | ||||||||||||    
T  42974240 ataagcaacttaattaagagcttatagcataaacacttatcatatta---gtgcttgtgtataaactatttctataacaaaaggtcatataaagtcaaac 42974336  T
Q  190 agtttttatataagctatactgatttgatgagctatcatggaga 233  Q
    | |||| || | |  || |||| ||| |||||||||||||||||    
T  42974337 aattttcatgtta--taaactgttttcatgagctatcatggaga 42974378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 7103587 - 7103550
Alignment:
Q  171 agataaaataaagtcaaacagtttttatataagctata 208  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  7103587 agataaaataaagtcaaactgttttaatataagctata 7103550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 255
Target Start/End: Original strand, 11513858 - 11513950
Alignment:
Q  165 aacaacagataaaataaagtcaaacagtttttatataagctata--ctgatttgatgagctatcatggagagcttacgaaaagaagctgaaaa 255  Q
    ||||| ||||||||||||||||||  ||||| ||||||||||||   || ||| || |||||||||||||| |||  | ||| ||||||||||    
T  11513858 aacaaaagataaaataaagtcaaattgttttcatataagctataagttgttttcataagctatcatggagaacttttggaaataagctgaaaa 11513950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 33192127 - 33192196
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    ||||||||| || | |||||||| | ||||  ||||||||||||||||||| ||||| ||||||| ||||    
T  33192127 agtgcttatataaaaactatttctataacataagataaaataaagtcaaactgttttcatataagttata 33192196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 300
Target Start/End: Original strand, 10190342 - 10190382
Alignment:
Q  260 tgatttcataagctctcccaaacagtctcataagtgtttat 300  Q
    ||||| ||||||||||| |||||||||| ||||||||||||    
T  10190342 tgattccataagctctctcaaacagtcttataagtgtttat 10190382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 11513975 - 11514019
Alignment:
Q  263 tttcataagctctcccaaacagtctcataagtgtttatgctagta 307  Q
    ||||||||||||||  ||||||||||| ||||| |||||||||||    
T  11513975 tttcataagctctctaaaacagtctcacaagtgcttatgctagta 11514019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 14209227 - 14209279
Alignment:
Q  155 ctatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctat 207  Q
    ||||||| | ||||| |||||||||||| |||||| ||||| |||||||||||    
T  14209227 ctatttcaataacaaaagataaaataaattcaaactgttttcatataagctat 14209279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 17952834 - 17952770
Alignment:
Q  142 gcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagcta 206  Q
    |||||| ||||  ||||||| | ||||| |||||||||||||||||||  |||| ||||||||||    
T  17952834 gcttatatataagctatttctataacaaaagataaaataaagtcaaactattttcatataagcta 17952770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 257
Target Start/End: Complemental strand, 36415776 - 36415689
Alignment:
Q  172 gataaaataaagtcaaacagtttttatataagctata--ctgatttgatgagctatcatggagagcttacgaaaagaagctgaaaaca 257  Q
    ||||||||||||||||||| |||| ||  | ||||||  ||| ||| || |||||||||| ||| |||||||||| ||| ||||||||    
T  36415776 gataaaataaagtcaaacatttttcattgatgctataagctgttttcataagctatcatgtagaacttacgaaaataagatgaaaaca 36415689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 7243578 - 7243642
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataag 203  Q
    ||||||| ||| ||||||||||  | ||||| ||||||||||| |||||||||||||||||||||    
T  7243578 agtgcttgtgtttacactatttttataacaaaagataaaataacgtcaaacagtttttatataag 7243642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 23214928 - 23214978
Alignment:
Q  257 agttgatttcataagctctcccaaacagtctcataagtgtttatgctagta 307  Q
    ||||| ||||||||  |||| ||||||||||||||||||||||||||||||    
T  23214928 agttgttttcataaattctctcaaacagtctcataagtgtttatgctagta 23214978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 28165025 - 28165146
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctat--actgatttgatgagctatcatggagagct 236  Q
    ||||||||||||||   | |||| | ||||| ||||||||| ||||||||  ||||| |||||||||||  ||||  || || |||||||||||||||||    
T  28165025 agtgcttatgtataagttctttctataacaaaagataaaatgaagtcaaattgttttaatataagctataaactgtctttataagctatcatggagagct 28165124  T
Q  237 tacgaaaagaagctgaaaacag 258  Q
    || | ||| ||| |||||||||    
T  28165125 tatggaaataagttgaaaacag 28165146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 22387893 - 22387840
Alignment:
Q  257 agttgatttcataagctctcccaaacagtctcataagtgtttatgctagtaaat 310  Q
    ||||| ||||||||||||||||||||||||||| | |||||||||  |||||||    
T  22387893 agttgttttcataagctctcccaaacagtctcacacgtgtttatgtcagtaaat 22387840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 31002695 - 31002764
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    |||||||||||||| |||||||| |  |||| ||||||||||||||||||   |||| ||||||||||||    
T  31002695 agtgcttatgtataaactatttcaaccacaaaagataaaataaagtcaaaatattttcatataagctata 31002764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 5288195 - 5288239
Alignment:
Q  268 taagctctcccaaacagtctcataagtgtttatgctagtaaatta 312  Q
    |||| ||||||||||||||||||||||| ||||||||||| ||||    
T  5288195 taagttctcccaaacagtctcataagtgcttatgctagtagatta 5288239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 2176846 - 2176893
Alignment:
Q  142 gcttatgtatacactatttcgaaaacaacagataaaataaagtcaaac 189  Q
    ||||||||||||||||||||   ||||| |||||||||||||||||||    
T  2176846 gcttatgtatacactatttcagtaacaaaagataaaataaagtcaaac 2176893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 310
Target Start/End: Complemental strand, 10079326 - 10079283
Alignment:
Q  267 ataagctctcccaaacagtctcataagtgtttatgctagtaaat 310  Q
    |||||||||||||||||  |||||||||||||||||| ||||||    
T  10079326 ataagctctcccaaacaacctcataagtgtttatgctcgtaaat 10079283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 5373159 - 5373228
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagt-caaacagtttttatataagctata 208  Q
    ||||||||||||||  ||||||| | ||||| |||||||||||||| |||||| |||||||||||| ||||    
T  5373159 agtgcttatgtatatgctatttctataacaaaagataaaataaagtccaaaca-tttttatataagttata 5373228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 327
Target Start/End: Original strand, 30535636 - 30535706
Alignment:
Q  257 agttgatttcataagctctcccaaacagtctcataagtgtttatgctagtaaattaattaatataagtcaa 327  Q
    ||||| ||||||||| ||||| ||||||||||  |||||||||||  |||||||||| | | |||||||||    
T  30535636 agttgttttcataagttctccaaaacagtctctcaagtgtttatgtcagtaaattaactcaaataagtcaa 30535706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 31341130 - 31341192
Alignment:
Q  141 tgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataag 203  Q
    ||||||||||||  ||||||  | ||||| ||||||||||||||||||| | |||||||||||    
T  31341130 tgcttatgtataagctatttgtataacaaaagataaaataaagtcaaactggttttatataag 31341192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 33894557 - 33894622
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagct 205  Q
    ||||||||||||||  ||||||| | ||||| ||||||||| ||||||||| ||||| |||||||||    
T  33894557 agtgcttatgtataagctatttctataacaaaagataaaat-aagtcaaactgttttcatataagct 33894622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 3610876 - 3610807
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    ||||||||||||||  ||||||| | ||||| ||||||||| ||| ||||| |||||  |||||||||||    
T  3610876 agtgcttatgtataagctatttctacaacaaaagataaaatgaaggcaaactgttttggtataagctata 3610807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 9527226 - 9527157
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    ||||||||| ||||| |||| || | ||||| ||||| ||||||||||||| ||||| |||||| |||||    
T  9527226 agtgcttatatatacgctatatctataacaaaagatataataaagtcaaactgttttcatataaactata 9527157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 30456570 - 30456517
Alignment:
Q  155 ctatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    ||||||| ||||||| ||||||||||||||||||  ||||| ||||||| ||||    
T  30456570 ctatttctaaaacaaaagataaaataaagtcaaattgttttcatataagttata 30456517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 31338474 - 31338511
Alignment:
Q  171 agataaaataaagtcaaacagtttttatataagctata 208  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  31338474 agataaaataaagtcaaactgtttttatataagttata 31338511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 1417203 - 1417263
Alignment:
Q  144 ttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagc 204  Q
    ||||||||| |||||||  | ||||| ||||||||||||||||||  ||||| ||||||||    
T  1417203 ttatgtataaactatttatataacaaaagataaaataaagtcaaattgttttcatataagc 1417263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 24975838 - 24975906
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctat 207  Q
    |||||| |||||||  ||| ||| | ||||| ||||||||||||| | ||| |||||||||||||||||    
T  24975838 agtgctgatgtataatctacttctataacaaaagataaaataaaggcgaactgtttttatataagctat 24975906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 46531499 - 46531531
Alignment:
Q  171 agataaaataaagtcaaacagtttttatataag 203  Q
    ||||||||||||||||||| |||||||||||||    
T  46531499 agataaaataaagtcaaactgtttttatataag 46531531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 49060479 - 49060543
Alignment:
Q  144 ttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    |||||||||  ||||||| | ||||| | ||||||||||||||||   |||||||||||||||||    
T  49060479 ttatgtataagctatttctataacaaaaaataaaataaagtcaaattatttttatataagctata 49060543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 305
Target Start/End: Complemental strand, 49282590 - 49282548
Alignment:
Q  263 tttcataagctctcccaaacagtctcataagtgtttatgctag 305  Q
    ||||||||||| ||||||||||||||||||||| |||||||||    
T  49282590 tttcataagctttcccaaacagtctcataagtgcttatgctag 49282548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 15360845 - 15360897
Alignment:
Q  156 tatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    |||||| | ||||| ||||||||||||||||||| ||||| ||||||||||||    
T  15360845 tatttctataacaaaagataaaataaagtcaaactgttttcatataagctata 15360897  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 52190146 - 52190182
Alignment:
Q  220 agctatcatggagagcttacgaaaagaagctgaaaac 256  Q
    ||||||||||||||||||||||||| |||||||||||    
T  52190146 agctatcatggagagcttacgaaaataagctgaaaac 52190182  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 4363767 - 4363699
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    ||||||||||||||| ||||||  | ||||| |||| |||||| ||||||| ||||| ||||||||||||    
T  4363767 agtgcttatgtatactctatttt-ataacaaaagattaaataatgtcaaactgttttcatataagctata 4363699  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 257
Target Start/End: Original strand, 4548687 - 4548775
Alignment:
Q  171 agataaaataaagtcaaacagtttttatataagctata--ctgatttgatgagctatcatggagagcttacgaaaagaagctgaaaaca 257  Q
    ||||||||||||||||||| ||||||||| |||  |||  ||| ||| || ||||||| ||||||||||  ||||| ||||| ||||||    
T  4548687 agataaaataaagtcaaactgtttttatacaagtcataagctgttttcataagctatcttggagagcttcagaaaataagctaaaaaca 4548775  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 17420141 - 17420206
Alignment:
Q  143 cttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    |||||||||| |||||||  | || || ||||||||||||||| |||| |||| ||||||||||||    
T  17420141 cttatgtataaactatttttataagaaaagataaaataaagtcgaacaattttcatataagctata 17420206  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 28467515 - 28467576
Alignment:
Q  266 cataagctctcccaaacagtctcataagtgtttatgctagtaaattaattaatataagtcaa 327  Q
    ||||| |||||||||| ||||||||||||| | |||||||||||| || | | |||||||||    
T  28467515 cataatctctcccaaatagtctcataagtgctaatgctagtaaataaactcaaataagtcaa 28467576  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 31517737 - 31517684
Alignment:
Q  257 agttgatttcataagctctcccaaacagtctcataagtgtttatgctagtaaat 310  Q
    ||||| ||| ||||| ||||||||||||||||| ||||| |||||| |||||||    
T  31517737 agttgttttgataagttctcccaaacagtctcacaagtgcttatgccagtaaat 31517684  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 32515429 - 32515388
Alignment:
Q  266 cataagctctcccaaacagtctcataagtgtttatgctagta 307  Q
    |||||||||||||||||||||||| ||||| ||||| |||||    
T  32515429 cataagctctcccaaacagtctcacaagtgcttatgttagta 32515388  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 40833939 - 40833902
Alignment:
Q  171 agataaaataaagtcaaacagtttttatataagctata 208  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  40833939 agataaaataaaatcaaactgtttttatataagctata 40833902  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 300
Target Start/End: Original strand, 44422778 - 44422815
Alignment:
Q  263 tttcataagctctcccaaacagtctcataagtgtttat 300  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  44422778 tttcataagctctcccagacagtctcaaaagtgtttat 44422815  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 45999424 - 45999355
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    |||||| |||||||  ||||||| | ||||| |||||| |||||||||||| | ||| ||||||||||||    
T  45999424 agtgctcatgtataagctatttctataacaaaagataagataaagtcaaactgctttcatataagctata 45999355  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 4034008 - 4033964
Alignment:
Q  263 tttcataagctctcccaaacagtctcataagtgtttatgctagta 307  Q
    |||||||||||||| |||||| ||||| |||||||||||| ||||    
T  4034008 tttcataagctctctcaaacaatctcacaagtgtttatgccagta 4033964  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 7472328 - 7472368
Alignment:
Q  220 agctatcatggagagcttacgaaaagaagctgaaaacagtt 260  Q
    ||||||| ||||||||||| ||||| |||||||||||||||    
T  7472328 agctatcttggagagcttatgaaaataagctgaaaacagtt 7472368  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 15565963 - 15565899
Alignment:
Q  144 ttatgtatacactatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    ||||||||| | |||||| ||| ||| |||||||||||||||||||  ||||| ||||| |||||    
T  15565963 ttatgtatataatatttccaaagcaaaagataaaataaagtcaaactatttttgtataaactata 15565899  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 309
Target Start/End: Original strand, 17420276 - 17420328
Alignment:
Q  257 agttgatttcataagctctcccaaacagtctcataagtgtttatgctagtaaa 309  Q
    ||||| ||||||||||||| | ||||||||| | |||||||||||||| ||||    
T  17420276 agttgttttcataagctcttcaaaacagtctaacaagtgtttatgctaataaa 17420328  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 28788641 - 28788605
Alignment:
Q  172 gataaaataaagtcaaacagtttttatataagctata 208  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  28788641 gataaaataaagtcaaactgttttcatataagctata 28788605  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 38170681 - 38170637
Alignment:
Q  263 tttcataagctctcccaaacagtctcataagtgtttatgctagta 307  Q
    |||||||||||||||||| |||||||| ||||||| |||| ||||    
T  38170681 tttcataagctctcccaagcagtctcacaagtgttcatgccagta 38170637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 43371882 - 43371838
Alignment:
Q  263 tttcataagctctcccaaacagtctcataagtgtttatgctagta 307  Q
    |||||||||||||| |||||||||||| ||||| |||||| ||||    
T  43371882 tttcataagctctctcaaacagtctcacaagtgcttatgccagta 43371838  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 52286629 - 52286681
Alignment:
Q  156 tatttcgaaaacaacagataaaataaagtcaaacagtttttatataagctata 208  Q
    |||||| | ||||| |||||||||||||| ||||| |||| ||||||||||||    
T  52286629 tatttctacaacaaaagataaaataaagttaaacaattttcatataagctata 52286681  T

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Target: scaffold0590 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 1210 - 1160
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaac 189  Q
    ||||||||||||||  ||||||| | ||||| |||||||||||||||||||    
T  1210 agtgcttatgtataagctatttctataacaaaagataaaataaagtcaaac 1160  T

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Target: scaffold0275 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 2765 - 2815
Alignment:
Q  139 agtgcttatgtatacactatttcgaaaacaacagataaaataaagtcaaac 189  Q
    ||||||||||||||  ||||||| | ||||| |||||||||||||||||||    
T  2765 agtgcttatgtataagctatttctataacaaaagataaaataaagtcaaac 2815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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