View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7547_high_4 (Length: 573)
Name: NF7547_high_4
Description: NF7547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7547_high_4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 14 - 573
Target Start/End: Complemental strand, 4935870 - 4935321
Alignment:
| Q |
14 |
caatatataattttcaatatatgaaacttgggtatggcataatttgaatattcaagacaacccattatcatttttgttgtttttaatttcaaagattgaa |
113 |
Q |
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| T |
4935870 |
caatatataattttcaatatatgaaacttgggtatggcataatttgattattcaagacaacccattatcatttttgttgtttttaatttcaaagattgaa |
4935771 |
T |
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| Q |
114 |
tttttatgttatgatgtttactaaagttaagaacttgtaagnnnnnnnnnnnnnnnnnnnntttacggtttgaactgattttattggttataatgatttg |
213 |
Q |
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| T |
4935770 |
tttttatgtgatgatgtttactaaagttaagaacttgtaagttttttatttt---------tttatggtttgaactgattttattggttataattatttg |
4935680 |
T |
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| Q |
214 |
tgttgtgaannnnnnnatgtttatgatgaatacagatactgtttattggatttgagttgatgaatttgtcatgcacatgttttgttgcgtagaaatgaag |
313 |
Q |
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| T |
4935679 |
tgttgtgaatttttt-atgtttatgatgaatacagatactgtttattggatttgagttgatgaatttgtcatgcacatgttttgttgcgtagaaatgaag |
4935581 |
T |
|
| Q |
314 |
ctgtttcttttgctgttttgattggattctagcgacctgagtgatattttggatccaagtttcattgttttattggattctgaaatctgaaattctagct |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4935580 |
ctgtttcttttgctgttttgattggattctagcgacctgagtgatattttggatccaagtttcattgttttattggattctgaaatctgaaattctaact |
4935481 |
T |
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| Q |
414 |
gctacattgattgtttaagaattgttgagtacaatgccgtatattcagaaattgtatgacgtctgcaaggcttccttgtctcctgaaggacctatttcag |
513 |
Q |
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| T |
4935480 |
gctacattgattgtttaagaattgttgagtacaatgccgtatattcagaaattgtatgacgtctgcaaggcttccttgtctcctgaaggacctatttcag |
4935381 |
T |
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| Q |
514 |
aagaagcacttgaaaaagtccgaaccgtcttaggtacaatctgatcctttgtatattgtt |
573 |
Q |
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| T |
4935380 |
aagaagcacttgaaaaagtccgaaccgtcttaggtacaatctgatcctttgtattttgtt |
4935321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 5020960 - 5020823
Alignment:
| Q |
14 |
caatatataattttcaatatatgaaacttgggtatggcataatttgaatattcaagacaacccattatc-atttttgttgtttttaatttcaaagattga |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5020960 |
caatatataattttcaatatatgaaacttgggtatggcataatttgattattcaagacaacccattatctatttttgttgtttttaatttcaaagattga |
5020861 |
T |
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| Q |
113 |
atttttatgttatgatgttt-actaaagttaagaactt |
149 |
Q |
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| T |
5020860 |
atttttatgtgatgatgtttaactaaagttaagaactt |
5020823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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