View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7547_low_11 (Length: 361)

Name: NF7547_low_11
Description: NF7547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7547_low_11
NF7547_low_11
[»] chr8 (10 HSPs)
chr8 (66-345)||(16895017-16895291)
chr8 (1-53)||(24200622-24200674)
chr8 (290-345)||(28700547-28700603)
chr8 (290-345)||(30085509-30085565)
chr8 (15-53)||(5200482-5200520)
chr8 (7-53)||(22839340-22839386)
chr8 (292-340)||(33167595-33167644)
chr8 (1-49)||(40930834-40930882)
chr8 (1-45)||(25829272-25829316)
chr8 (1-53)||(38086414-38086466)
[»] chr7 (9 HSPs)
chr7 (1-53)||(46691845-46691897)
chr7 (1-46)||(22197752-22197797)
chr7 (1-46)||(22240024-22240069)
chr7 (1-50)||(30655601-30655650)
chr7 (291-342)||(43930093-43930145)
chr7 (306-345)||(42815688-42815727)
chr7 (1-50)||(1039066-1039115)
chr7 (1-50)||(42598066-42598115)
chr7 (305-345)||(17878690-17878730)
[»] chr4 (5 HSPs)
chr4 (1-53)||(15186981-15187033)
chr4 (1-49)||(16572150-16572198)
chr4 (1-53)||(25641269-25641321)
chr4 (1-53)||(16662307-16662359)
chr4 (305-345)||(31699610-31699650)
[»] chr3 (11 HSPs)
chr3 (1-53)||(43073046-43073098)
chr3 (291-345)||(29235642-29235697)
chr3 (1-53)||(31525443-31525495)
chr3 (1-49)||(44656229-44656277)
chr3 (305-345)||(54187060-54187100)
chr3 (1-48)||(28934741-28934788)
chr3 (1-50)||(8431421-8431470)
chr3 (1-49)||(10454364-10454412)
chr3 (15-47)||(28957042-28957074)
chr3 (1-45)||(47820982-47821026)
chr3 (1-53)||(52076145-52076197)
[»] chr1 (10 HSPs)
chr1 (1-49)||(31833971-31834019)
chr1 (1-53)||(12173034-12173086)
chr1 (1-53)||(19472880-19472932)
chr1 (7-53)||(28447805-28447851)
chr1 (1-53)||(26990681-26990733)
chr1 (1-53)||(38548757-38548809)
chr1 (1-45)||(42442015-42442059)
chr1 (305-345)||(19078921-19078961)
chr1 (305-345)||(19126809-19126849)
chr1 (1-53)||(43460785-43460837)
[»] chr6 (2 HSPs)
chr6 (1-53)||(33112715-33112767)
chr6 (7-53)||(6575811-6575857)
[»] chr5 (5 HSPs)
chr5 (1-53)||(42241589-42241641)
chr5 (1-45)||(9931804-9931848)
chr5 (7-53)||(9597754-9597800)
chr5 (1-47)||(22887291-22887337)
chr5 (1-45)||(23172981-23173025)
[»] chr2 (3 HSPs)
chr2 (1-49)||(41419700-41419748)
chr2 (1-50)||(38908749-38908798)
chr2 (1-49)||(14732344-14732392)


Alignment Details
Target: chr8 (Bit Score: 183; Significance: 6e-99; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 66 - 345
Target Start/End: Original strand, 16895017 - 16895291
Alignment:
Q  66 tgaaaagatcaaaatatttaatatttataacttatgagatcaaaatcaaaatgtatgactaaagtgtataatatgtatgtaatgtaaagaactaaaatga 165  Q
    |||||||||||| ||||||||||||||||||||| |||||||| ||      ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16895017 tgaaaagatcaacatatttaatatttataacttacgagatcaatat------gtatgactatagtgtataatatgtatgtaatgtaaagaactaaaatga 16895110  T
Q  166 agagaaatttcctctctaggaacctacacctgtgtggaaatgggactgggccacacaaaatagtctgcagtttgggactaaattggaaagaagtgatata 265  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16895111 agagaaatttcctccctaggaacctacacctgtgtgtaaatgggact-ggccacacaaaatagtctgcagtttgggactaaatcggaaagaagtgatata 16895209  T
Q  266 -aattggggattaaatgatttattctaagaggaatgttatg-acactctctttctaacattctctttaacactcactctctt 345  Q
     | |||||||||||||||||||||||||||| | || |||| ||||||| ||||||||||||||| ||||||||||||||||    
T  16895210 catttggggattaaatgatttattctaagagaagtgctatgaacactctttttctaacattctctctaacactcactctctt 16895291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 24200674 - 24200622
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgccgatt 53  Q
    ||||| ||||||| ||||||||||||||| || ||||||||||||||||||||    
T  24200674 agcttattagtgcttcttgcacggacttgttgattaataatattttgccgatt 24200622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 290 - 345
Target Start/End: Original strand, 28700547 - 28700603
Alignment:
Q  290 taagaggaatgttatg-acactctctttctaacattctctttaacactcactctctt 345  Q
    |||||||| ||||||| ||||||||||||||||| ||||| ||||||||||||||||    
T  28700547 taagaggagtgttatgtacactctctttctaacactctctctaacactcactctctt 28700603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 290 - 345
Target Start/End: Complemental strand, 30085565 - 30085509
Alignment:
Q  290 taagaggaatgttatg-acactctctttctaacattctctttaacactcactctctt 345  Q
    |||||||||||||||| ||||||||||||||||| ||||| ||||||| ||||||||    
T  30085565 taagaggaatgttatggacactctctttctaacactctctctaacacttactctctt 30085509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 5200520 - 5200482
Alignment:
Q  15 tcttgcacggacttggtggttaataatattttgccgatt 53  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  5200520 tcttgcacggacttgttggttaataatattttgccgatt 5200482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 22839340 - 22839386
Alignment:
Q  7 ttagtgcatcttgcacggacttggtggttaataatattttgccgatt 53  Q
    ||||||| |||||||||| |||| |||||||||||||||||||||||    
T  22839340 ttagtgcgtcttgcacgggcttgttggttaataatattttgccgatt 22839386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 33167644 - 33167595
Alignment:
Q  292 agaggaatgttatga-cactctctttctaacattctctttaacactcact 340  Q
    |||||| |||||||| ||||||| ||||||||||||||||||||||||||    
T  33167644 agaggagtgttatgaacactctccttctaacattctctttaacactcact 33167595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40930882 - 40930834
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgcc 49  Q
    ||||| ||||||| |||||||||| |||| |||||||||||||||||||    
T  40930882 agcttattagtgcttcttgcacgggcttgttggttaataatattttgcc 40930834  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25829316 - 25829272
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattt 45  Q
    ||||| ||||||| |||||||||| |||| |||||||||||||||    
T  25829316 agcttattagtgcttcttgcacgggcttgttggttaataatattt 25829272  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 38086466 - 38086414
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgccgatt 53  Q
    ||||| ||||||| |||||||||| |||  |||||||||||||||||| ||||    
T  38086466 agcttattagtgcgtcttgcacgggcttattggttaataatattttgctgatt 38086414  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 46691897 - 46691845
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgccgatt 53  Q
    ||||||||||||| |||||||||| |||| |||||||||||||||||||||||    
T  46691897 agcttgttagtgcttcttgcacgggcttgttggttaataatattttgccgatt 46691845  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 22197752 - 22197797
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatatttt 46  Q
    ||||| |||||||| |||||||||||||| ||||||||||||||||    
T  22197752 agctttttagtgcaccttgcacggacttgttggttaataatatttt 22197797  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 22240069 - 22240024
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatatttt 46  Q
    ||||| |||||||| |||||||||||||| ||||||||||||||||    
T  22240069 agctttttagtgcaccttgcacggacttgttggttaataatatttt 22240024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 30655650 - 30655601
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgccg 50  Q
    ||||| ||||||| |||||||||| |||| ||||||||||||||||||||    
T  30655650 agcttattagtgcgtcttgcacgggcttgttggttaataatattttgccg 30655601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 342
Target Start/End: Complemental strand, 43930145 - 43930093
Alignment:
Q  291 aagaggaatgttatg-acactctctttctaacattctctttaacactcactct 342  Q
    ||||||| ||||||| ||||||||||||||||| ||||| |||||||||||||    
T  43930145 aagaggagtgttatggacactctctttctaacactctctctaacactcactct 43930093  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 345
Target Start/End: Complemental strand, 42815727 - 42815688
Alignment:
Q  306 acactctctttctaacattctctttaacactcactctctt 345  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  42815727 acactctctttctaacactctctttaacactcaccctctt 42815688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 1039115 - 1039066
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgccg 50  Q
    ||||| ||||||| |||||||||| ||||  |||||||||||||||||||    
T  1039115 agcttattagtgcttcttgcacgggcttgtcggttaataatattttgccg 1039066  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 42598066 - 42598115
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgccg 50  Q
    ||||| ||||||| ||||||||||  ||| ||||||||||||||||||||    
T  42598066 agcttattagtgcttcttgcacgggtttgttggttaataatattttgccg 42598115  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 17878690 - 17878730
Alignment:
Q  305 gacactctctttctaacattctctttaacactcactctctt 345  Q
    |||||||||||||||||| ||||||||||| | ||||||||    
T  17878690 gacactctctttctaacactctctttaacatttactctctt 17878730  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 15187033 - 15186981
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgccgatt 53  Q
    ||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  15187033 agcttattagtgcatcttgcacgggcttgttggttaataatattttgccgatt 15186981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16572150 - 16572198
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgcc 49  Q
    ||||| ||||||||||| |||||| |||| |||||||||||||||||||    
T  16572150 agcttattagtgcatctcgcacgggcttgttggttaataatattttgcc 16572198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 25641321 - 25641269
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgccgatt 53  Q
    ||||| ||||||| |||||||||| |||| |||||||||| ||||||||||||    
T  25641321 agctttttagtgcttcttgcacgggcttgttggttaataacattttgccgatt 25641269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 16662359 - 16662307
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgccgatt 53  Q
    ||||| ||||||| ||| |||||| |||| |||||||||||||||||| ||||    
T  16662359 agcttattagtgcttctcgcacgggcttgttggttaataatattttgctgatt 16662307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 345
Target Start/End: Complemental strand, 31699650 - 31699610
Alignment:
Q  305 gacactctctttctaacattctctttaacactcactctctt 345  Q
    |||||||||||||||||| |||||  |||||||||||||||    
T  31699650 gacactctctttctaacactctctccaacactcactctctt 31699610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 43073098 - 43073046
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgccgatt 53  Q
    ||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  43073098 agcttattagtgcatcttgcacgggcttgttggttaataatattttgccgatt 43073046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 345
Target Start/End: Original strand, 29235642 - 29235697
Alignment:
Q  291 aagaggaatgttatg-acactctctttctaacattctctttaacactcactctctt 345  Q
    ||||||| ||||||| ||||||||||||||||| ||||| ||||||||||||||||    
T  29235642 aagaggagtgttatggacactctctttctaacactctctctaacactcactctctt 29235697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 31525443 - 31525495
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgccgatt 53  Q
    ||||| ||||||| |||||||| | |||| |||||||||||||||||||||||    
T  31525443 agcttattagtgcttcttgcacaggcttgttggttaataatattttgccgatt 31525495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 44656277 - 44656229
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgcc 49  Q
    ||||| || ||||||||||||||| |||| |||||||||||||||||||    
T  44656277 agcttatttgtgcatcttgcacgggcttgttggttaataatattttgcc 44656229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 345
Target Start/End: Complemental strand, 54187100 - 54187060
Alignment:
Q  305 gacactctctttctaacattctctttaacactcactctctt 345  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  54187100 gacactctctttctaacactctctctaacactcactctctt 54187060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 28934788 - 28934741
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgc 48  Q
    ||||| ||||||| |||||||||| |||| ||||||||||||||||||    
T  28934788 agcttattagtgcttcttgcacgggcttgttggttaataatattttgc 28934741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 8431470 - 8431421
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgccg 50  Q
    |||||||||||||||||||||||| |||  || | |||||||||||||||    
T  8431470 agcttgttagtgcatcttgcacgggcttcttgatcaataatattttgccg 8431421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10454364 - 10454412
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgcc 49  Q
    ||||| |||||||  ||||||||| |||| |||||||||||||||||||    
T  10454364 agcttattagtgctccttgcacgggcttgttggttaataatattttgcc 10454412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 28957042 - 28957074
Alignment:
Q  15 tcttgcacggacttggtggttaataatattttg 47  Q
    ||||||||||||||| |||||||||||||||||    
T  28957042 tcttgcacggacttgttggttaataatattttg 28957074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 47820982 - 47821026
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattt 45  Q
    ||||| ||||||| |||||||||| |||| |||||||||||||||    
T  47820982 agcttattagtgcgtcttgcacgggcttgttggttaataatattt 47821026  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 52076145 - 52076197
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgccgatt 53  Q
    ||||| ||||||| ||| |||||| |||| |||||| ||||||||||||||||    
T  52076145 agcttattagtgcttctcgcacgggcttgttggttagtaatattttgccgatt 52076197  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31833971 - 31834019
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgcc 49  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  31833971 agcttgttagtgcatcttgcacggatttgttggttaataatattttgcc 31834019  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 12173034 - 12173086
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgccgatt 53  Q
    ||||| ||||||| |||||||||| |||| |||||||||||||||||||||||    
T  12173034 agcttattagtgcttcttgcacgggcttgttggttaataatattttgccgatt 12173086  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 19472880 - 19472932
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgccgatt 53  Q
    ||||| ||||||| |||||||||| |||| |||||||||||||||||||||||    
T  19472880 agcttattagtgcgtcttgcacgggcttgttggttaataatattttgccgatt 19472932  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 28447805 - 28447851
Alignment:
Q  7 ttagtgcatcttgcacggacttggtggttaataatattttgccgatt 53  Q
    ||||||| |||||||||| |||| |||||||||||||||||||||||    
T  28447805 ttagtgcttcttgcacgggcttgttggttaataatattttgccgatt 28447851  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 26990681 - 26990733
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgccgatt 53  Q
    ||||| ||||||| |||||||||| |||  |||||||||||||||||||||||    
T  26990681 agcttattagtgcttcttgcacgggcttattggttaataatattttgccgatt 26990733  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 38548757 - 38548809
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgccgatt 53  Q
    ||||| ||||||| ||||||||||  ||| |||||||||||||||||||||||    
T  38548757 agcttattagtgcgtcttgcacgggtttgttggttaataatattttgccgatt 38548809  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 42442059 - 42442015
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattt 45  Q
    ||||| ||||||| ||||||||||||||| |||||||||||||||    
T  42442059 agcttattagtgcttcttgcacggacttgttggttaataatattt 42442015  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 19078921 - 19078961
Alignment:
Q  305 gacactctctttctaacattctctttaacactcactctctt 345  Q
    |||||||| ||||||||| ||||| ||||||||||||||||    
T  19078921 gacactctgtttctaacactctctctaacactcactctctt 19078961  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 19126809 - 19126849
Alignment:
Q  305 gacactctctttctaacattctctttaacactcactctctt 345  Q
    |||||||| ||||||||| ||||| ||||||||||||||||    
T  19126809 gacactctgtttctaacactctctctaacactcactctctt 19126849  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 43460785 - 43460837
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgccgatt 53  Q
    ||||| ||||||| ||| |||| |||||| ||||||||||||||||| |||||    
T  43460785 agcttattagtgcttctcgcacagacttgttggttaataatattttgtcgatt 43460837  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 33112767 - 33112715
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgccgatt 53  Q
    ||||| ||||||| |||||||||| |||| |||||||||||||||||||||||    
T  33112767 agctttttagtgcgtcttgcacgggcttgttggttaataatattttgccgatt 33112715  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 6575811 - 6575857
Alignment:
Q  7 ttagtgcatcttgcacggacttggtggttaataatattttgccgatt 53  Q
    ||||||| |||||||||| |||| || ||||||||||||||||||||    
T  6575811 ttagtgcttcttgcacgggcttgttgattaataatattttgccgatt 6575857  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 42241641 - 42241589
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgccgatt 53  Q
    ||||| |||||||||||||| |||||||  |||||||||||||||||||||||    
T  42241641 agcttattagtgcatcttgcccggacttattggttaataatattttgccgatt 42241589  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 9931848 - 9931804
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattt 45  Q
    ||||||||||||| |||||||||| |||| |||||||||||||||    
T  9931848 agcttgttagtgcttcttgcacgggcttgttggttaataatattt 9931804  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 9597800 - 9597754
Alignment:
Q  7 ttagtgcatcttgcacggacttggtggttaataatattttgccgatt 53  Q
    ||||||| |||||||| | |||| |||||||||||||||||||||||    
T  9597800 ttagtgcttcttgcacaggcttgttggttaataatattttgccgatt 9597754  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 22887291 - 22887337
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttg 47  Q
    ||||| ||||||||||| |||||| |||| |||||||||||||||||    
T  22887291 agcttattagtgcatctcgcacgggcttgttggttaataatattttg 22887337  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23173025 - 23172981
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattt 45  Q
    ||||| ||||||| |||||||||| |||| |||||||||||||||    
T  23173025 agcttattagtgcttcttgcacgggcttgttggttaataatattt 23172981  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 41419700 - 41419748
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgcc 49  Q
    ||||| |||||||||||||||||| |||| |||||||||||||||||||    
T  41419700 agcttattagtgcatcttgcacgggcttgttggttaataatattttgcc 41419748  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 38908749 - 38908798
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgccg 50  Q
    ||||| |||||||||||||||||| |||  ||||||||||||||||||||    
T  38908749 agcttattagtgcatcttgcacggccttattggttaataatattttgccg 38908798  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14732392 - 14732344
Alignment:
Q  1 agcttgttagtgcatcttgcacggacttggtggttaataatattttgcc 49  Q
    ||||| |||||||| || |||||| |||| |||||||||||||||||||    
T  14732392 agcttattagtgcacctcgcacgggcttgttggttaataatattttgcc 14732344  T

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