View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7547_low_14 (Length: 347)

Name: NF7547_low_14
Description: NF7547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7547_low_14
NF7547_low_14
[»] chr1 (5 HSPs)
chr1 (10-328)||(4679018-4679336)
chr1 (16-89)||(15594662-15594735)
chr1 (16-128)||(34467255-34467367)
chr1 (240-294)||(15594455-15594509)
chr1 (241-301)||(29465262-29465322)
[»] chr7 (32 HSPs)
chr7 (15-134)||(10494840-10494959)
chr7 (15-296)||(13333834-13334118)
chr7 (15-201)||(8666932-8667121)
chr7 (10-135)||(8658945-8659070)
chr7 (10-208)||(1300970-1301167)
chr7 (19-228)||(8545122-8545331)
chr7 (12-135)||(8654032-8654155)
chr7 (16-133)||(6789096-6789213)
chr7 (16-115)||(8537638-8537737)
chr7 (59-134)||(8671608-8671683)
chr7 (247-328)||(8646263-8646344)
chr7 (79-194)||(8616201-8616316)
chr7 (240-293)||(8586400-8586453)
chr7 (247-299)||(1300873-1300925)
chr7 (16-132)||(8581285-8581401)
chr7 (16-131)||(7878200-7878315)
chr7 (247-296)||(3146682-3146731)
chr7 (16-133)||(8590222-8590339)
chr7 (247-299)||(8658778-8658830)
chr7 (16-135)||(3146846-3146965)
chr7 (19-134)||(29578142-29578257)
chr7 (16-63)||(29582308-29582355)
chr7 (16-134)||(8609500-8609618)
chr7 (16-125)||(8575918-8576027)
chr7 (241-293)||(8616136-8616188)
chr7 (15-63)||(17267593-17267641)
chr7 (16-63)||(17259895-17259942)
chr7 (19-61)||(8569967-8570009)
chr7 (247-301)||(8666829-8666883)
chr7 (10-47)||(8017874-8017911)
chr7 (222-295)||(8653863-8653936)
chr7 (79-135)||(8586236-8586292)
[»] chr2 (8 HSPs)
chr2 (19-201)||(43624928-43625110)
chr2 (15-135)||(16657983-16658103)
chr2 (16-135)||(16662459-16662578)
chr2 (19-133)||(11998992-11999106)
chr2 (239-307)||(43624819-43624887)
chr2 (240-295)||(16658214-16658269)
chr2 (241-295)||(7541645-7541699)
chr2 (236-296)||(12246096-12246156)
[»] chr4 (5 HSPs)
chr4 (15-201)||(9336357-9336546)
chr4 (16-183)||(30774786-30774953)
chr4 (247-296)||(9336595-9336644)
chr4 (16-73)||(23597052-23597109)
chr4 (241-296)||(30774670-30774725)
[»] chr5 (2 HSPs)
chr5 (19-136)||(28219499-28219616)
chr5 (247-306)||(28219326-28219385)
[»] chr8 (2 HSPs)
chr8 (241-307)||(43744223-43744289)
chr8 (16-77)||(12528144-12528205)
[»] chr3 (1 HSPs)
chr3 (248-296)||(53416761-53416809)


Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 328
Target Start/End: Original strand, 4679018 - 4679336
Alignment:
10 aagaatatcaacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgag 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
4679018 aagagtatcaacccagatgaggctgttgcttatggtgcagctatccaagctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgag 4679117  T
110 atgttaccccattgtcacttggtatccttgttgatgaagataccatgagtgtggtgattcctagaaatacttctgtgcctatcaagaagacagaagaata 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4679118 atgttaccccattgtcacttggtatccttgttgatgaagataccatgagtgtggtgattcctagaaatacttctgtgcctatcaagaagacagaagaata 4679217  T
210 tgctacccgtgaagataattctggtaccttaattaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtttgatcttttg 309  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4679218 tgctacccgtgaagataattctgatacctttattaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtttgatcttttg 4679317  T
310 tgtccagatgctcctcgtg 328  Q
    |||||||||||||||||||    
4679318 tgtccagatgctcctcgtg 4679336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 15594735 - 15594662
Alignment:
16 atcaacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgt 89  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||| | ||||| ||||||||||| |||||    
15594735 atcaaccctgatgaggctgttgcttatggtgcagctgtccaggctgctttgttgagtgaaggttttaaaaatgt 15594662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 34467255 - 34467367
Alignment:
16 atcaacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgtta 115  Q
    |||||||| ||||||||||| |||||||  |||||| | || |||||| | |||||  |||| ||||| ||||| || || || ||||||||||||||||    
34467255 atcaaccctgatgaggctgtcgcttatgtcgcagctgtgcaagctgctttgttgagtaaaggctttaacaatgttccaaacttggtgctgcgagatgtta 34467354  T
116 ccccattgtcact 128  Q
    | |||||||||||    
34467355 caccattgtcact 34467367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 15594509 - 15594455
Alignment:
240 aattaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggt 294  Q
    |||| |||||||||||||||||||||||||||| |  ||||| ||| ||||||||    
15594509 aattcaggtttatgagggtgagagagcaagagctagtgacaataatttgcttggt 15594455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 29465322 - 29465262
Alignment:
241 attaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtttg 301  Q
    |||| ||| ||||||||||||||||||||||| |  |||||  ||||||||||||| ||||    
29465322 attagggtatatgagggtgagagagcaagagctagtgacaattatctgcttggttcatttg 29465262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 10494840 - 10494959
Alignment:
15 tatcaacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgtt 114  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||| || ||||| |||||||||    
10494840 tatcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgtt 10494939  T
115 accccattgtcacttggtat 134  Q
    ||||||||||||||||||||    
10494940 accccattgtcacttggtat 10494959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 15 - 296
Target Start/End: Original strand, 13333834 - 13334118
Alignment:
15 tatcaacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgtt 114  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||| ||||||||| || ||||| |||||||||    
13333834 tatcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagactgtcccgaacttggtgctacgagatgtt 13333933  T
115 accccattgtcacttggtatccttgttgatgaagataccatgagtgtggtgattcctagaaatacttctgtgcctatcaagaagac---agaagaatatg 211  Q
    | |||||| |||||||||||    ||  ||||| ||| ||||| ||| ||||||||||| || |||||  | ||| ||||||||||   || || ||||     
13333934 atcccattatcacttggtatttcagtatatgaacatatcatgaatgttgtgattcctaggaacacttccatccctgtcaagaagactaaaggaggatatt 13334033  T
212 ctacccgtgaagataattctggtaccttaattaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttc 296  Q
     |||   ||||||||||| | ||  ||  ||| | || ||||||||||||||||||||||| |  ||||| ||||| ||||||||    
13334034 atacagctgaagataattgttgtgtctctattgatgtatatgagggtgagagagcaagagctagtgacaataatctacttggttc 13334118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 8667121 - 8666932
Alignment:
15 tatcaacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgtt 114  Q
    |||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||||| | |||||||||||| || || ||||| ||||||||     
8667121 tatcaacccagacgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctgtaagaatgtccccaacttggtgctacgagatgtg 8667022  T
115 accccattgtcacttggtatccttgt---tgatgaagataccatgagtgtggtgattcctagaaatacttctgtgcctatcaagaagaca 201  Q
    ||||| ||||||||||||||   |||   |  |||| ||| |||||||||||||||||||||||| |||||  | ||| |||||||||||    
8667021 acccctttgtcacttggtatttctgtaagtattgaacatatcatgagtgtggtgattcctagaaacacttccatacctgtcaagaagaca 8666932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 8659070 - 8658945
Alignment:
10 aagaatatcaacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgag 109  Q
    |||| ||||||||||||||||||||||||||||||||||||| | || |||||| |||| ||| |||| |||||||||||||| || || ||||||| ||    
8659070 aagagtatcaacccagatgaggctgttgcttatggtgcagctcttcaagctgctgttttaagcaaaggctttaagaatgtcccaaacttggtgctgcaag 8658971  T
110 atgttaccccattgtcacttggtatc 135  Q
    ||||||||||||||||||||||||||    
8658970 atgttaccccattgtcacttggtatc 8658945  T

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Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 208
Target Start/End: Complemental strand, 1301167 - 1300970
Alignment:
10 aagaatatcaacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgag 109  Q
    |||| ||||||||| || |||||||||||||||||||||||||| || ||||||||||| ||| |||| || ||||||||||| || || ||||||| ||    
1301167 aagagtatcaaccc-gacgaggctgttgcttatggtgcagctattcaagctgctattttaagcaaaggattcaagaatgtcccaaacttggtgctgcaag 1301069  T
110 atgttaccccattgtcacttggtatccttgttgatgaagataccatgagtgtggtgattcctagaaatacttctgtgcctatcaagaagacagaagaat 208  Q
    ||||||||||||||||||||||||||   || | |||  ||  |||||||||||||||||| || || ||| | |||||| ||| ||||||| ||||||    
1301068 atgttaccccattgtcacttggtatcgcagtaggtgatcatgtcatgagtgtggtgattccaaggaacactaccgtgcctgtcaggaagacaaaagaat 1300970  T

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Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 8545331 - 8545122
Alignment:
19 aacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccc 118  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||| |  |||| ||||    |||||||||||| ||  | ||||| |||||||||||||    
8545331 aaccctgatgaggctgttgcttatggtgcagctgtccaggctgctttgctgagtgaagacaataagaatgtcccaaacatggtgctacgagatgttaccc 8545232  T
119 cattgtcacttggtatccttgttgatgaagataccatgagtgtggtgattcctagaaatacttctgtgcctatcaagaagacagaagaatatgctacccg 218  Q
    | ||||||||||||||| || |  | | | |||  |||||||||||||||||| | ||||||||||| ||  ||||||||||| |||  ||| ||||| |    
8545231 ctttgtcacttggtatctttatacacggaaatattatgagtgtggtgattccttggaatacttctgtaccattcaagaagacacaagtttattctaccgg 8545132  T
219 tgaagataat 228  Q
    ||||||||||    
8545131 tgaagataat 8545122  T

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Target: chr7; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 8654155 - 8654032
Alignment:
12 gaatatcaacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagat 111  Q
    |||||||||||||||||||||| |||| ||||| || ||| | ||||||||||||||||| ||||  |||||||||||||| || || ||||| || |||    
8654155 gaatatcaacccagatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaagactttaagaatgtccccaacttggtgctacgtgat 8654056  T
112 gttaccccattgtcacttggtatc 135  Q
    ||||||||||||||||||||||||    
8654055 gttaccccattgtcacttggtatc 8654032  T

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Target: chr7; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 6789213 - 6789096
Alignment:
16 atcaacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgtta 115  Q
    |||||||| ||||||||||||||||| ||||||||| ||||||||||| | ||||||||||| | ||||| ||| || || || ||||||| ||||||||    
6789213 atcaaccctgatgaggctgttgcttacggtgcagctgtccaggctgctttgttgagcgaaggctctaagagtgttccaaacttggtgctgcaagatgtta 6789114  T
116 ccccattgtcacttggta 133  Q
    | || ||||| |||||||    
6789113 caccgttgtctcttggta 6789096  T

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Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 8537737 - 8537638
Alignment:
16 atcaacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgtta 115  Q
    |||||||| ||||| ||||||||||||||||| ||| ||||||||||| | ||||||| |||  |||||| ||| ||||| || ||||||||||||||||    
8537737 atcaaccctgatgaagctgttgcttatggtgctgctgtccaggctgctttgttgagcggaggcattaagactgttccgaacttggtgctgcgagatgtta 8537638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 134
Target Start/End: Original strand, 8671608 - 8671683
Alignment:
59 ctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccccattgtcacttggtat 134  Q
    |||||||||||||| |||| |||||||||||||| || || ||||| ||||||||||| |||||||||||||||||    
8671608 ctgctattttgagcaaaggctttaagaatgtccccaacttggtgctacgagatgttacgccattgtcacttggtat 8671683  T

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Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 247 - 328
Target Start/End: Complemental strand, 8646344 - 8646263
Alignment:
247 gtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtttgatcttttgtgtccagatgctcctcgtg 328  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||| ||| |||||| |   |||| |||||||||||    
8646344 gtttatgagggtgagagagcaagagcaagtgacaacaatctgcttggttcttttaatctttggctcccagctgctcctcgtg 8646263  T

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Target: chr7; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 8616316 - 8616201
Alignment:
79 tttaagaatgtcccgaattttgtgctgcgagatgttaccccattgtcacttggtatccttgttgatgaagataccatgagtgtggtgattcctagaaata 178  Q
    ||||||||||| || || || | ||||||||||||||||||  |||||||||||||| | ||  | | |||||  |||||||||||||||||||| ||||    
8616316 tttaagaatgttccaaacttggcgctgcgagatgttacccctctgtcacttggtatcttagtcaaaggagatattatgagtgtggtgattcctaggaata 8616217  T
179 cttctgtgcctatcaa 194  Q
    ||||||| ||| ||||    
8616216 cttctgtacctgtcaa 8616201  T

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Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 8586400 - 8586453
Alignment:
240 aattaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttgg 293  Q
    ||||||||||||||||||||||||||||||||| |  |||||||||||||||||    
8586400 aattaaggtttatgagggtgagagagcaagagctagtgacaacaatctgcttgg 8586453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 1300925 - 1300873
Alignment:
247 gtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtt 299  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||||||    
1300925 gtttatgagggtgagagagcaagagcgcaagacaacaatctgcttggttcgtt 1300873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 8581401 - 8581285
Alignment:
16 atcaacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgtta 115  Q
    |||||||| ||||||||||||||||||||||| ||||| ||||||||| |  | || |||||  |||||| ||| || || ||  |  ||||||||||||    
8581401 atcaaccctgatgaggctgttgcttatggtgctgctattcaggctgctttggttagtgaaggcattaagagtgttccaaacttgattttgcgagatgtta 8581302  T
116 ccccattgtcacttggt 132  Q
    | |||||||||||||||    
8581301 caccattgtcacttggt 8581285  T

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Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 7878200 - 7878315
Alignment:
16 atcaacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgtta 115  Q
    |||||||| ||||| ||||||||||||||||||||| | ||||||||| |  |  | || ||| |||||||||| || ||||| ||| ||| ||||||||    
7878200 atcaacccggatgaagctgttgcttatggtgcagctgttcaggctgctctgctttgtgatggtattaagaatgttcctaatttggtgttgcaagatgtta 7878299  T
116 ccccattgtcacttgg 131  Q
    | |||||||| |||||    
7878300 ctccattgtctcttgg 7878315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 296
Target Start/End: Complemental strand, 3146731 - 3146682
Alignment:
247 gtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttc 296  Q
    |||||||||||||||||||||||||| |  ||||||||||||||||||||    
3146731 gtttatgagggtgagagagcaagagctagtgacaacaatctgcttggttc 3146682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 8590339 - 8590222
Alignment:
16 atcaacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgtta 115  Q
    ||||| |||||||||||||||||||||||||||||| | || |||||| |  |  | || ||  |||||||||| || ||||| ||||| | ||||||||    
8590339 atcaatccagatgaggctgttgcttatggtgcagctgttcaagctgctttgctttgtgatgggattaagaatgttcctaatttggtgctacaagatgtta 8590240  T
116 ccccattgtcacttggta 133  Q
    | |||||||| |||||||    
8590239 ctccattgtctcttggta 8590222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 8658830 - 8658778
Alignment:
247 gtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtt 299  Q
    ||||| ||||||||||||||||||||   ||||||||||||||||||||||||    
8658830 gtttacgagggtgagagagcaagagcgctagacaacaatctgcttggttcgtt 8658778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 3146965 - 3146846
Alignment:
16 atcaacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgtta 115  Q
    |||||||| |||||||| |||||||||||||||||| | || |||||| | ||||| ||||  ||||| ||||| || || || ||| ||| |||||||     
3146965 atcaaccctgatgaggccgttgcttatggtgcagctgtgcaagctgctttgttgagtgaagactttaaaaatgttccaaacttggtggtgcaagatgttg 3146866  T
116 ccccattgtcacttggtatc 135  Q
    | || ||||| |||||||||    
3146865 ctcctttgtctcttggtatc 3146846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 29578142 - 29578257
Alignment:
19 aacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccc 118  Q
    ||||| || |||||||||||||||||||||||| | ||||||||| | ||||  || ||  |||||||||| || ||||| ||  |||||||| |||| |    
29578142 aaccctgacgaggctgttgcttatggtgcagctgtgcaggctgctttgttgattgatggcattaagaatgttccaaatttggtcttgcgagatattacac 29578241  T
119 cattgtcacttggtat 134  Q
    | ||||| ||||||||    
29578242 ccttgtcgcttggtat 29578257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 29582308 - 29582355
Alignment:
16 atcaacccagatgaggctgttgcttatggtgcagctatccaggctgct 63  Q
    |||||||| ||||||||||||||||||||||||||| | |||||||||    
29582308 atcaaccctgatgaggctgttgcttatggtgcagctgtgcaggctgct 29582355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 8609618 - 8609500
Alignment:
16 atcaacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgtta 115  Q
    |||||||| |||||||| |||||||||||||| ||| ||||||||||| | ||| | |||||  | ||    || || || || ||||||||||||||||    
8609618 atcaaccctgatgaggcggttgcttatggtgctgctgtccaggctgctttgttgggtgaaggcatcaaatcagttccaaacttggtgctgcgagatgtta 8609519  T
116 ccccattgtcacttggtat 134  Q
    | || ||||||||||||||    
8609518 cacctttgtcacttggtat 8609500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 8576027 - 8575918
Alignment:
16 atcaacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgtta 115  Q
    |||||||| ||||||||||||||||||||||| | | |||| |||||| | ||||| |||||   ||||||||| || || || ||| | ||||||||||    
8576027 atcaaccctgatgaggctgttgcttatggtgctgttgtccaagctgctttgttgagtgaaggcagtaagaatgttccaaacttggtgttacgagatgtta 8575928  T
116 ccccattgtc 125  Q
    | || |||||    
8575927 caccgttgtc 8575918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 8616188 - 8616136
Alignment:
241 attaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttgg 293  Q
    |||||| ||||||||||||||||| ||||||| |  |||||||||||||||||    
8616188 attaagttttatgagggtgagagatcaagagctagtgacaacaatctgcttgg 8616136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 17267641 - 17267593
Alignment:
15 tatcaacccagatgaggctgttgcttatggtgcagctatccaggctgct 63  Q
    ||||||||| ||||||||||||||||||||||| ||| | |||||||||    
17267641 tatcaaccctgatgaggctgttgcttatggtgctgctgttcaggctgct 17267593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 17259942 - 17259895
Alignment:
16 atcaacccagatgaggctgttgcttatggtgcagctatccaggctgct 63  Q
    |||||||| ||||||||||||||||||||||| ||| | |||||||||    
17259942 atcaaccctgatgaggctgttgcttatggtgctgctgttcaggctgct 17259895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 8570009 - 8569967
Alignment:
19 aacccagatgaggctgttgcttatggtgcagctatccaggctg 61  Q
    ||||| ||||||||||||||||| ||||||||||| |||||||    
8570009 aaccctgatgaggctgttgcttacggtgcagctattcaggctg 8569967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 8666883 - 8666829
Alignment:
247 gtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtttg 301  Q
    |||||||||||||||||| |||||||  | ||||| |||||||||||||| ||||    
8666883 gtttatgagggtgagagaccaagagctgctgacaataatctgcttggttcatttg 8666829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 8017874 - 8017911
Alignment:
10 aagaatatcaacccagatgaggctgttgcttatggtgc 47  Q
    |||| |||||||||||| ||||||||||||||||||||    
8017874 aagagtatcaacccagacgaggctgttgcttatggtgc 8017911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 8653936 - 8653863
Alignment:
222 agataattctggtaccttaattaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggtt 295  Q
    |||||||| |||| |||  ||||  |||||||||||||||||| ||||||| |  ||||| |||||||||||||    
8653936 agataattgtggtgcctctattattgtttatgagggtgagagaccaagagctagtgacaataatctgcttggtt 8653863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 8586236 - 8586292
Alignment:
79 tttaagaatgtcccgaattttgtgctgcgagatgttaccccattgtcacttggtatc 135  Q
    |||||||| || || || || ||||||||||||||||||||  ||||||||||||||    
8586236 tttaagaaagttccaaacttggtgctgcgagatgttacccctctgtcacttggtatc 8586292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 43625110 - 43624928
Alignment:
19 aacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccc 118  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||  ||||  |||||||||| || || || |||||||||||||||||||    
43625110 aaccctgatgaggctgttgcttatggtgcagctgtccaggctgctattttgagtaaaggcattaagaatgttccaaaattggtgctgcgagatgttaccc 43625011  T
119 cattgtcacttggtatccttgttgatgaagataccatgagtgtggtgattcctagaaatacttctgtgcctatcaagaagaca 201  Q
    | ||||||||||||||| |     | | || |  ||||||||||||||||||||| ||||||||||| ||| |||||||||||    
43625010 ctttgtcacttggtatcttaaacaagggaggtgtcatgagtgtggtgattcctaggaatacttctgtacctgtcaagaagaca 43624928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 16657983 - 16658103
Alignment:
15 tatcaacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgtt 114  Q
    ||||||||| ||||| ||||||||||| ||||||||| | || |||||||||||||| ||||| ||||||||||||||  |||| ||| || ||||||||    
16657983 tatcaacccggatgaagctgttgcttacggtgcagctgttcaagctgctattttgagtgaaggctttaagaatgtcccagatttggtgttgagagatgtt 16658082  T
115 accccattgtcacttggtatc 135  Q
    ||||||||||| |||||||||    
16658083 accccattgtcgcttggtatc 16658103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 16662459 - 16662578
Alignment:
16 atcaacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgtta 115  Q
    |||||||| |||||||||||||||||||| |||||| | || |||||| | ||||| |||||  ||||| |||| || || || ||||||||||| ||||    
16662459 atcaaccctgatgaggctgttgcttatggggcagctgtgcaagctgctgtgttgagtgaaggcattaaggatgttccaaacttggtgctgcgagacgtta 16662558  T
116 ccccattgtcacttggtatc 135  Q
    ||||||||||||||||||||    
16662559 ccccattgtcacttggtatc 16662578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 11999106 - 11998992
Alignment:
19 aacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccc 118  Q
    ||||| ||||||||||| |||||||| |||||| | || |||||| | ||||| |||| | |||||||||| || ||||| ||| |||  |||||||| |    
11999106 aaccctgatgaggctgtagcttatggggcagctgttcaagctgctttgttgagtgaagatgttaagaatgttccaaatttggtgttgcaggatgttactc 11999007  T
119 cattgtcacttggta 133  Q
    | ||||| |||||||    
11999006 ctttgtctcttggta 11998992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 43624887 - 43624819
Alignment:
239 taattaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtttgatcttt 307  Q
    ||||| ||||||||||| ||||||||||| ||| ||  |||||||||||| ||||||| ||| ||||||    
43624887 taattgaggtttatgagtgtgagagagcatgagtaagtgacaacaatctgattggttcttttaatcttt 43624819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 295
Target Start/End: Original strand, 16658214 - 16658269
Alignment:
240 aattaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggtt 295  Q
    |||||| ||||||||||||||||||||||||||  | ||||| |||||||| ||||    
16658214 aattaatgtttatgagggtgagagagcaagagctgctgacaataatctgctcggtt 16658269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 7541699 - 7541645
Alignment:
241 attaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggtt 295  Q
    ||||| |||||||||||||||||||||||||| |  || |||||| |||||||||    
7541699 attaatgtttatgagggtgagagagcaagagccagtgataacaatttgcttggtt 7541645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 296
Target Start/End: Original strand, 12246096 - 12246156
Alignment:
236 ccttaattaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttc 296  Q
    |||| ||||||||||| |||||||||||| ||| ||| |  ||||||||| ||||||||||    
12246096 ccttgattaaggtttacgagggtgagagaacaaaagccagtgacaacaatttgcttggttc 12246156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 9336357 - 9336546
Alignment:
15 tatcaacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgtt 114  Q
    ||||||||||||||||||||||||||||||||||||| | || |||||||||||||| ||||| ||||||||||  || || || ||||| |||||||||    
9336357 tatcaacccagatgaggctgttgcttatggtgcagctgttcaagctgctattttgagtgaaggctttaagaatgcgcccaacttggtgctacgagatgtt 9336456  T
115 accccattgtcacttggtatc----cttgttgatgaagataccatgagtgtggtgattcctagaaatacttctgtgcctatcaagaagaca 201  Q
    |||||||||||||||||||||    | |  | | ||| ||| |||||||||||||||||||||||| |||||  | ||| |||||||||||    
9336457 accccattgtcacttggtatcgcaacat-ataaggaaaatatcatgagtgtggtgattcctagaaacacttccatacctgtcaagaagaca 9336546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 30774953 - 30774786
Alignment:
16 atcaacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgtta 115  Q
    ||||| || |||||||| |||||| | || |||||| ||||||||||| | ||||| |||||  ||||||||| ||| || || |||||||||||||| |    
30774953 atcaatcctgatgaggcagttgctcacggggcagctgtccaggctgctctattgagtgaaggcattaagaatgccccaaagttggtgctgcgagatgtca 30774854  T
116 ccccattgtcacttggtatccttgttgatgaagataccatgagtgtggtgattcctagaaatacttct 183  Q
    |||| ||||||||||||||    ||  || |||| ||||||  |||||| |||||||| |||||||||    
30774853 cccctttgtcacttggtatttcagtgaatcaagacaccatggatgtggtaattcctaggaatacttct 30774786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 9336595 - 9336644
Alignment:
247 gtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttc 296  Q
    |||||||||||||||||| ||||||| || ||||| ||||||||||||||    
9336595 gtttatgagggtgagagaccaagagctactgacaataatctgcttggttc 9336644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 23597052 - 23597109
Alignment:
16 atcaacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcg 73  Q
    |||||||| |||||||||||||||||||| || ||  |||| ||||||||||||||||    
23597052 atcaaccctgatgaggctgttgcttatggcgctgcagtccaagctgctattttgagcg 23597109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 296
Target Start/End: Complemental strand, 30774725 - 30774670
Alignment:
241 attaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttc 296  Q
    ||||| |||||||||||||||||||||||||   | |||||||||||||| |||||    
30774725 attaatgtttatgagggtgagagagcaagagtcgcggacaacaatctgctaggttc 30774670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 28219616 - 28219499
Alignment:
19 aacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccc 118  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||| | ||||| ||||| ||||| || || ||||| || ||||||| ||||||||| |    
28219616 aaccctgatgaggctgttgcttatggtgcagctgtgcaggctgctttgttgagtgaaggctttaaaaaagttccgaagttggtgctgcaagatgttacac 28219517  T
119 cattgtcacttggtatcc 136  Q
    | ||||| ||||||||||    
28219516 ctttgtctcttggtatcc 28219499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 247 - 306
Target Start/End: Complemental strand, 28219385 - 28219326
Alignment:
247 gtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtttgatctt 306  Q
    |||||||||||||||||||||| |||||  |||||||||||||||||||| |||||||||    
28219385 gtttatgagggtgagagagcaaaagcaagtgacaacaatctgcttggttcttttgatctt 28219326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 43744289 - 43744223
Alignment:
241 attaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtttgatcttt 307  Q
    ||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| |||| |||||    
43744289 attaaagtttatgagggtgagagagcaagagcaagtgacaacaatctgcttggttcttttgctcttt 43744223  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 12528205 - 12528144
Alignment:
16 atcaacccagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaagg 77  Q
    |||||||| ||||||||||||||||||||||| ||| | ||||||||| | ||||| |||||    
12528205 atcaaccctgatgaggctgttgcttatggtgccgctgttcaggctgctttgttgagtgaagg 12528144  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 53416761 - 53416809
Alignment:
248 tttatgagggtgagagagcaagagcaacagacaacaatctgcttggttc 296  Q
    ||||||||||||||||| ||||||| || ||||| ||||||||||||||    
53416761 tttatgagggtgagagaccaagagctactgacaataatctgcttggttc 53416809  T

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