View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7547_low_15 (Length: 347)
Name: NF7547_low_15
Description: NF7547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7547_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 47875365 - 47875051
Alignment:
| Q |
18 |
tgatttgggtagctctacgtcacttacaagtttgtgcaccttaataatgcgtttcaattttgttttaacttcttggaggatttgttttgttcagtacaat |
117 |
Q |
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| T |
47875365 |
tgatttgggtagctctacgtcacttacaagtttgtgcaccttaaaaatgcgtttcaattttgttttaacttcttggaggatttgttgtgttcagtacaat |
47875266 |
T |
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| Q |
118 |
acatttcgtggtaatcgtcctatccgttacttagacgtttaattttgacacgtggctaacattttg---------acacacgcttggataattaaacaat |
208 |
Q |
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| T |
47875265 |
acttttcgtggtaatcgtcctat----------gacgtttaattttgacacgtggctaacatattgcatacatggacacacgcttggataattaaacaat |
47875176 |
T |
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| Q |
209 |
nnnnnnnnntgtcacgacatatatgaaatattatcatccattgtagatcaaaacgggccatatgtgattaccatagactgaccacactaaattatttttc |
308 |
Q |
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| T |
47875175 |
aaaaaaaa-tgtcacgacatatatgaaatattatcatccattgtagatcaaaacgggccatatgtgattaccatagactgaccacactaaattatttttc |
47875077 |
T |
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| Q |
309 |
cagccccatatattttccagaacttc |
334 |
Q |
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| T |
47875076 |
cagccccatatattttccagaacttc |
47875051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 10209397 - 10209464
Alignment:
| Q |
18 |
tgatttgggtagctctacgtcacttacaagtttgtgcaccttaataatgcgtttcaattttgttttaactt |
88 |
Q |
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| T |
10209397 |
tgatttgggtagttctatgtcactgactagtatatgcaccttaata---cgttacaattttgttttaactt |
10209464 |
T |
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