View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7547_low_17 (Length: 336)

Name: NF7547_low_17
Description: NF7547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7547_low_17
NF7547_low_17
[»] chr2 (3 HSPs)
chr2 (41-318)||(39728696-39728975)
chr2 (1-47)||(23395907-23395953)
chr2 (1-37)||(31750448-31750484)
[»] chr1 (2 HSPs)
chr1 (1-47)||(48915246-48915292)
chr1 (1-30)||(48915056-48915085)
[»] chr4 (1 HSPs)
chr4 (1-37)||(52673269-52673305)
[»] chr8 (1 HSPs)
chr8 (1-47)||(4835041-4835087)
[»] chr7 (1 HSPs)
chr7 (1-30)||(2628507-2628536)


Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 41 - 318
Target Start/End: Complemental strand, 39728975 - 39728696
Alignment:
Q  41 caccaaagtgctaccc-ataacttcaaattctaaattcgattgttttggtgacttctgtctactactcaacatgtggcaattgcaatccccatggccaaa 139  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39728975 caccaaagtgctaccccataacttcaaattctaaattcgattgttttggtgacttatgtctactactcaacatgtggcaattgcaatccccatggccaaa 39728876  T
Q  140 atgagcatgagtgcttcatatgcaacacatgtcatgcttcatattcagaag-nnnnnnnnntgagaatcttaacaagtacgattatttgtggcatcttga 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||| |||||||||||||||||||||||||||    
T  39728875 atgagcatgagtgcttcatatgcaacacatgtcatgcttcatattcagaagaaaaaaaaaatgagaatcttagcaagtacgattatttgtggcatcttga 39728776  T
Q  239 tccaaaagagtcaaatactcaatagtgtacattgcatcatgcaaagtacgaatgtgaattgtgaaggtttattaaggaat 318  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39728775 tccaaaagagtcaaatactcaatagtgtacattgcattatgcaaagtacgaatgtgaattgtgaaggtttattaaggaat 39728696  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 23395953 - 23395907
Alignment:
Q  1 aagagagagatagacacaaaagtatcaatgacaccaataacaccaaa 47  Q
    |||||||||||||||||||| ||| |||||||||||||  |||||||    
T  23395953 aagagagagatagacacaaatgtaccaatgacaccaatggcaccaaa 23395907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 31750484 - 31750448
Alignment:
Q  1 aagagagagatagacacaaaagtatcaatgacaccaa 37  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  31750484 aagagagagatagacacaaaggtatcaatggcaccaa 31750448  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 48915246 - 48915292
Alignment:
Q  1 aagagagagatagacacaaaagtatcaatgacaccaataacaccaaa 47  Q
    |||||||||||||||||||||||||||||| |||||||  |||||||    
T  48915246 aagagagagatagacacaaaagtatcaatggcaccaatggcaccaaa 48915292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 48915056 - 48915085
Alignment:
Q  1 aagagagagatagacacaaaagtatcaatg 30  Q
    ||||||||||||||||||||||||||||||    
T  48915056 aagagagagatagacacaaaagtatcaatg 48915085  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 52673269 - 52673305
Alignment:
Q  1 aagagagagatagacacaaaagtatcaatgacaccaa 37  Q
    ||||||||||||||||||||| |||||||||||||||    
T  52673269 aagagagagatagacacaaaaatatcaatgacaccaa 52673305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4835041 - 4835087
Alignment:
Q  1 aagagagagatagacacaaaagtatcaatgacaccaataacaccaaa 47  Q
    |||||| ||||||||||||||||||||||| |||||||  |||||||    
T  4835041 aagagaaagatagacacaaaagtatcaatggcaccaatggcaccaaa 4835087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 2628507 - 2628536
Alignment:
Q  1 aagagagagatagacacaaaagtatcaatg 30  Q
    ||||||||||||||||||||||||||||||    
T  2628507 aagagagagatagacacaaaagtatcaatg 2628536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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