View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7547_low_18 (Length: 334)
Name: NF7547_low_18
Description: NF7547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7547_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 10864733 - 10864423
Alignment:
| Q |
1 |
ttccaggatagatttttgttggcctcggcctgaagtttcgacaacggatttaatgaatttgaaacaacaattaaatgaatcgcttgttcactttattgaa |
100 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10864733 |
ttccaagatagatttttgttggcctcagcctgaagtttcgacaacggatttaatgaatttgaaacaacaattaaatgaatcgcttgttcaatttattgaa |
10864634 |
T |
|
| Q |
101 |
agtttagaaaggcaactggaaagtgttcaatccaatttcttgagattgaatatgaatcgatggccattaatttcatgcattcaaatctagaggagaaatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10864633 |
agtttagaaaggcaactggaaagtgttcaatccaatttcttgacattgaatatgaatcgatggccattaatttcatgcattcaaagctagaggagaaatt |
10864534 |
T |
|
| Q |
201 |
ggttcaacaaacttgccataatctgaacgaattgacttcatgaggggcacatatagaacaaaagaaaaagagaaggtgctagctgaaggagaggtcaaca |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10864533 |
ggtccaacaaacttgccataatctgaacgaattgacttcatgaggggcacatatagaacaaaagaaaaagagaaggtgctagctgaaggagaggtcaaca |
10864434 |
T |
|
| Q |
301 |
ctggaaagagg |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
10864433 |
ctggaaagagg |
10864423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University