View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7547_low_2 (Length: 699)
Name: NF7547_low_2
Description: NF7547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7547_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 507; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Original strand, 34820936 - 34821446
Alignment:
| Q |
1 |
gccgtcgtttaccgttatcaactttgttccatgcataatcaaatgtctcgagcatttgagattttactttacaagcttcaccatcggtcttcatctgttc |
100 |
Q |
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| T |
34820936 |
gccgtcgtttaccgttatcaactttgttccatgcataatcaaatgtctcgagcatttgagattttactttacaagcttcaccatcggtcttcatctgttc |
34821035 |
T |
|
| Q |
101 |
aacaaatagtattgcgcaaataaatcattgaaattaaaaatatttgcaaatcatttgtttaagataaaattttacttgtcttccctaaatgcaagacttg |
200 |
Q |
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| T |
34821036 |
aacaaatggtattgcgcaaataaatcattgaaattaaaaatatttgcaaatcatttgtttaagataaaattttacttgtcttccctaaatgcaagacttg |
34821135 |
T |
|
| Q |
201 |
atatcaattaattgtgtaaattatttccacaaacatcattagagatcattgcttaacatttactatggtctgttaggtacgtaatggattaactcataac |
300 |
Q |
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| T |
34821136 |
atatcaattaattgtgtaaattatttccacaaacatcattagagatcattgcttaacatttactatggtctgttaggtacgtaatggattaactcataac |
34821235 |
T |
|
| Q |
301 |
tagagacaatacttatttgatttcataattatcaacaatcatggactttgtgatattaatctagctttttggatccatcaatacatggtcaattgaaacc |
400 |
Q |
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| T |
34821236 |
tagagacaatacttatttgatttcataattatcaacaatcatggactttgtgatattaatctagctttttggatccatcaatacatggtcaattgaaacc |
34821335 |
T |
|
| Q |
401 |
atattgatattaacaaattgaaaaataaatgtacatgcatgaagtgtacttacagaagcccatctataaacaattgggaacccttgaaaaatgatctcat |
500 |
Q |
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| T |
34821336 |
atattgatattaacaaattgaaaaataaatgtacatgcatgaagtgtacttacagaagcccatctataaacaattgggaacccttgaaaaatgatctcat |
34821435 |
T |
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| Q |
501 |
gaaacaatgag |
511 |
Q |
| |
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||||||||||| |
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| T |
34821436 |
gaaacaatgag |
34821446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 503 - 676
Target Start/End: Original strand, 34826567 - 34826740
Alignment:
| Q |
503 |
aacaatgagcctgatgcacaaccatcacccaaatgacctccatctttgctataactttggagtatttttctcacatcaacagattttccaatataaacca |
602 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34826567 |
aacaatgagcctgatgcacaaccatcacccaaatgacctccatctttgctataactttggagtatttttctcacatcaacagattttccaatataaacca |
34826666 |
T |
|
| Q |
603 |
ctactacgccatgagggtcagtcgcaagcttgtaaatttcacaccctaaatcactagtcgacgaacctacacca |
676 |
Q |
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| T |
34826667 |
ctactacgccatgagggtcggtcgcaagcttgtaaatttcacaccctaaatcactagtcgacgaacctacacca |
34826740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 389 - 511
Target Start/End: Original strand, 34835565 - 34835688
Alignment:
| Q |
389 |
tcaattgaaaccatattgatattaacaaattgaaaaataaa--tgtacatgcatgaagtgtacttacagaagcccatctataaacaattgggaacccttg |
486 |
Q |
| |
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|||||||||| ||| ||||| |||| |||||||| || ||| |||| | ||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34835565 |
tcaattgaaatcatcttgatcttaataaattgaagaaaaaaagtgtaaa-gcatgaaatgtacttacagaagcccatctataaacaattgggaaaccttg |
34835663 |
T |
|
| Q |
487 |
aaaaatgatctcatgaaacaatgag |
511 |
Q |
| |
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|| || ||| ||||||||||||||| |
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| T |
34835664 |
aagaaagatttcatgaaacaatgag |
34835688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 445 - 510
Target Start/End: Complemental strand, 35335533 - 35335468
Alignment:
| Q |
445 |
tgtacttacagaagcccatctataaacaattgggaacccttgaaaaatgatctcatgaaacaatga |
510 |
Q |
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| T |
35335533 |
tgtacttacaggagcccatctataaacaattgggaagccttgtgaaaatatctcctgaaacaatga |
35335468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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