View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7547_low_23 (Length: 242)
Name: NF7547_low_23
Description: NF7547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7547_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 43989314 - 43989499
Alignment:
| Q |
16 |
gagaagaagcgacaaagaaggagtggacggcgcagacatagtgaccatggacagtggcgaaagagaacgaattgaacagagaagaagaataaggaaaagg |
115 |
Q |
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| T |
43989314 |
gagaagaagcgacaaagaaggagtggacggcgcagacacagtgaccatggacagtggcgaaagagaacgaattgaacagagaagaagaataaggaaaagg |
43989413 |
T |
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| Q |
116 |
tgtgggacgacatgatcgtaagtcaaagaaggagaacaaggcaaccgaggacaatatgacaatgggctctaaaacatgaggaattc |
201 |
Q |
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| T |
43989414 |
tgtgggacgacatgatcgtaagtcaaagaaggagaacaaggcaaccgaggacaatatgacaatgggctctaaaacatgaggaattc |
43989499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 43918590 - 43918528
Alignment:
| Q |
96 |
gaagaagaataaggaaaaggtgtgggacgacatgatcgtaagtcaaagaaggagaacaaggca |
158 |
Q |
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| T |
43918590 |
gaagaagaataaggagaaggcatgggacgacatgatcgtaggtcgaaggaggagaagaaggca |
43918528 |
T |
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