View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7547_low_7 (Length: 435)

Name: NF7547_low_7
Description: NF7547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7547_low_7
NF7547_low_7
[»] chr8 (6 HSPs)
chr8 (260-433)||(533329-533502)
chr8 (17-183)||(533579-533745)
chr8 (62-173)||(30089079-30089190)
chr8 (106-173)||(13800761-13800828)
chr8 (129-173)||(1786639-1786683)
chr8 (21-67)||(30936708-30936754)
[»] chr7 (12 HSPs)
chr7 (260-433)||(45974068-45974241)
chr7 (260-433)||(29244910-29245083)
chr7 (17-183)||(45974318-45974484)
chr7 (260-393)||(34095458-34095591)
chr7 (17-183)||(29245159-29245313)
chr7 (260-364)||(29830559-29830663)
chr7 (260-379)||(19465106-19465225)
chr7 (260-330)||(6443829-6443899)
chr7 (129-173)||(34095738-34095782)
chr7 (21-67)||(29263396-29263442)
chr7 (17-46)||(47329676-47329705)
chr7 (17-49)||(34095860-34095892)
[»] chr2 (12 HSPs)
chr2 (260-433)||(14805859-14806032)
chr2 (260-433)||(15332374-15332547)
chr2 (260-433)||(16431511-16431684)
chr2 (260-433)||(17692254-17692427)
chr2 (260-433)||(37259957-37260130)
chr2 (17-183)||(17692489-17692655)
chr2 (17-183)||(37259714-37259880)
chr2 (17-183)||(16431746-16431912)
chr2 (17-183)||(14805617-14805782)
chr2 (17-179)||(15332632-15332794)
chr2 (260-379)||(14101634-14101753)
chr2 (17-46)||(37080737-37080766)
[»] chr1 (14 HSPs)
chr1 (260-433)||(12983165-12983338)
chr1 (260-433)||(45346550-45346723)
chr1 (17-183)||(45346307-45346473)
chr1 (260-417)||(39242253-39242410)
chr1 (260-404)||(17015684-17015828)
chr1 (17-183)||(12983415-12983581)
chr1 (260-417)||(45319959-45320116)
chr1 (23-173)||(39242517-39242667)
chr1 (260-367)||(27289559-27289666)
chr1 (17-165)||(22105435-22105583)
chr1 (260-379)||(52382932-52383050)
chr1 (62-173)||(49410417-49410528)
chr1 (94-173)||(47036160-47036239)
chr1 (129-173)||(45319760-45319804)
[»] chr4 (17 HSPs)
chr4 (260-433)||(20135056-20135229)
chr4 (260-433)||(55917676-55917849)
chr4 (16-183)||(20135306-20135473)
chr4 (260-417)||(42063344-42063501)
chr4 (260-417)||(47028443-47028600)
chr4 (17-179)||(55917444-55917606)
chr4 (17-173)||(28682960-28683116)
chr4 (260-364)||(4922188-4922292)
chr4 (260-379)||(27295953-27296071)
chr4 (260-358)||(28682770-28682868)
chr4 (352-433)||(28682668-28682749)
chr4 (260-330)||(45988466-45988536)
chr4 (85-173)||(24226970-24227058)
chr4 (295-386)||(8407410-8407502)
chr4 (129-173)||(42063156-42063200)
chr4 (129-173)||(47028253-47028297)
chr4 (17-47)||(24226913-24226943)
[»] chr3 (12 HSPs)
chr3 (260-433)||(39831487-39831660)
chr3 (16-183)||(39831243-39831410)
chr3 (260-379)||(50359796-50359915)
chr3 (260-379)||(50646942-50647061)
chr3 (260-379)||(22427048-22427167)
chr3 (297-417)||(15071373-15071493)
chr3 (85-173)||(12945368-12945457)
chr3 (62-173)||(33213492-33213603)
chr3 (63-173)||(29835675-29835784)
chr3 (17-47)||(12945484-12945514)
chr3 (129-170)||(53284152-53284193)
chr3 (129-173)||(29702542-29702586)
[»] scaffold0166 (2 HSPs)
scaffold0166 (260-433)||(25382-25555)
scaffold0166 (17-179)||(25135-25297)
[»] chr5 (12 HSPs)
chr5 (260-433)||(24782999-24783172)
chr5 (17-179)||(24782752-24782914)
chr5 (260-379)||(30628350-30628469)
chr5 (85-173)||(41406092-41406180)
chr5 (85-173)||(1835909-1835997)
chr5 (85-173)||(40321389-40321477)
chr5 (62-173)||(31480537-31480648)
chr5 (85-171)||(6768025-6768111)
chr5 (17-47)||(1836024-1836054)
chr5 (17-47)||(40321504-40321534)
chr5 (17-47)||(41406035-41406065)
chr5 (129-173)||(39885722-39885766)
[»] scaffold0662 (2 HSPs)
scaffold0662 (260-417)||(7322-7479)
scaffold0662 (129-173)||(7132-7176)
[»] chr6 (4 HSPs)
chr6 (260-379)||(12945318-12945437)
chr6 (260-330)||(7124681-7124751)
chr6 (114-173)||(944992-945051)
chr6 (129-174)||(7124487-7124532)
[»] scaffold0685 (1 HSPs)
scaffold0685 (260-379)||(6944-7062)
[»] scaffold0896 (1 HSPs)
scaffold0896 (129-174)||(1831-1876)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 6e-84; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 260 - 433
Target Start/End: Complemental strand, 533502 - 533329
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  533502 tatttcattattaaaaataaataaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaataac 533403  T
Q  360 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaattaacaccaaagtc 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  533402 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaatcaacacaaaagtc 533329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 533745 - 533579
Alignment:
Q  17 agttatcctacatccaataataatgcgccacgttattgaatgatatcatgtgtgttgactgttgtatcgtatataccgtgtaactacttaatatgtacca 116  Q
    ||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||  ||||||||||||| || || |||||||||||    
T  533745 agttatcctacatccaataataatgcgccacattgttgaatgatgtcatgtgtgttgactgttgtatgatatataccgtgtatctgctcaatatgtacca 533646  T
Q  117 ccgtagactaacttttttgaactatcagattaagcaattcactagtgttattgtgttcataatctcc 183  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  533645 ccgtagactagcttttttgaactatcagattaagcaattcactagtgttattgtgttcataatctcc 533579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 62 - 173
Target Start/End: Complemental strand, 30089190 - 30089079
Alignment:
Q  62 tcatgtgtgttgactgttgtatcgtatataccgtgtaactacttaatatgtaccaccgtagactaacttttttgaactatcagattaagcaattcactag 161  Q
    ||||||||| ||| ||||| ||  ||| ||| ||||| || || ||||||| |||||||||||||| |||||||||| |||||||||| || ||||||||    
T  30089190 tcatgtgtgctgattgttgcatgatatgtactgtgtacctgctcaatatgttccaccgtagactaatttttttgaaccatcagattaaacacttcactag 30089091  T
Q  162 tgttattgtgtt 173  Q
    ||||||| ||||    
T  30089090 tgttattttgtt 30089079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 13800761 - 13800828
Alignment:
Q  106 aatatgtaccaccgtagactaacttttttgaactatcagattaagcaattcactagtgttattgtgtt 173  Q
    ||||||| ||| ||||||||| ||||||||||| |||||||||| ||  |||||| ||||||||||||    
T  13800761 aatatgttccatcgtagactagcttttttgaaccatcagattaaacacctcactaatgttattgtgtt 13800828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 1786639 - 1786683
Alignment:
Q  129 ttttttgaactatcagattaagcaattcactagtgttattgtgtt 173  Q
    |||||||||||||| |||||||||  |||||||||||||||||||    
T  1786639 ttttttgaactatcggattaagcacctcactagtgttattgtgtt 1786683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 30936708 - 30936754
Alignment:
Q  21 atcctacatccaataataatgcgccacgttattgaatgatatcatgt 67  Q
    ||||||||||||||||||||| |||||||| || |||||| ||||||    
T  30936708 atcctacatccaataataatgtgccacgtttttaaatgatgtcatgt 30936754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 158; Significance: 6e-84; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 260 - 433
Target Start/End: Complemental strand, 45974241 - 45974068
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  45974241 tatttcattattaaaaataaataaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaataac 45974142  T
Q  360 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaattaacaccaaagtc 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  45974141 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaatcaacacaaaagtc 45974068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 260 - 433
Target Start/End: Complemental strand, 29245083 - 29244910
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  29245083 tatttcattattaaaaataaataaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttttttattgaacaaaaaacaaaataac 29244984  T
Q  360 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaattaacaccaaagtc 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  29244983 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaatcaacacaaaagtc 29244910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 45974484 - 45974318
Alignment:
Q  17 agttatcctacatccaataataatgcgccacgttattgaatgatatcatgtgtgttgactgttgtatcgtatataccgtgtaactacttaatatgtacca 116  Q
    ||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |||||||||||||| || || |||||||||||    
T  45974484 agttatcctacatccaataataatgcgccacattgttgaatgatgtcatgtgtgttgactgttgtatggtatataccgtgtatctgctcaatatgtacca 45974385  T
Q  117 ccgtagactaacttttttgaactatcagattaagcaattcactagtgttattgtgttcataatctcc 183  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45974384 ccgtagactagcttttttgaactatcagattaagcaattcactagtgttattgtgttcataatctcc 45974318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 260 - 393
Target Start/End: Complemental strand, 34095591 - 34095458
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34095591 tattttattattaaaaataaataaatcaaggaagattatgaacatcaccaccatcttcataccttcatcatcttctttattgaacaaaaatcaaaatagc 34095492  T
Q  360 tactcaaatacatctccaaataacatgaatctca 393  Q
    |||||||||||| || ||||||||||||||||||    
T  34095491 tactcaaatacacctacaaataacatgaatctca 34095458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 29245313 - 29245159
Alignment:
Q  17 agttatcctacatccaataataatgcgccacgttattgaatgatatcatgtgtgttgactgttgtatcgtatataccgtgtaactacttaatatgtacca 116  Q
    ||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |||||||||||||| || || |||||          
T  29245313 agttatcctacatccaataataatgcgccacattgttgaatgatgtcatgtgtgttgactgttgtatggtatataccgtgtatctgctcaatat------ 29245220  T
Q  117 ccgtagactaacttttttgaactatcagattaagcaattcactagtgttattgtgttcataatctcc 183  Q
          |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29245219 ------actagcttttttgaactatcagattaagcaattcactagtgttactgtgttcataatctcc 29245159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 260 - 364
Target Start/End: Original strand, 29830559 - 29830663
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29830559 tatttcattattaaaaataaataaacccaggaagattatgaacatcatcgccatgttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 29830658  T
Q  360 tactc 364  Q
    |||||    
T  29830659 tactc 29830663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 260 - 379
Target Start/End: Complemental strand, 19465225 - 19465106
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||||||||||||||||||| ||| | ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  19465225 tatttcattattaaaaataaataaatccaggaagattatgaacatcatcactatgttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 19465126  T
Q  360 tactcaaatacatctccaaa 379  Q
    ||||| ||| || |||||||    
T  19465125 tactctaattcacctccaaa 19465106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 260 - 330
Target Start/End: Complemental strand, 6443899 - 6443829
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcat 330  Q
    ||||||||||||||||||||| ||| | | ||| |||||||||||||||||||||||||||||||||||||    
T  6443899 tatttcattattaaaaataaataaatccatgaaaattatgaacatcatcaccatcttcataccttcatcat 6443829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 34095782 - 34095738
Alignment:
Q  129 ttttttgaactatcagattaagcaattcactagtgttattgtgtt 173  Q
    |||||||||| |||||||||||||  |||||||||||||||||||    
T  34095782 ttttttgaaccatcagattaagcatctcactagtgttattgtgtt 34095738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 29263442 - 29263396
Alignment:
Q  21 atcctacatccaataataatgcgccacgttattgaatgatatcatgt 67  Q
    ||||||||||||||||||||| |||||||| || |||||| ||||||    
T  29263442 atcctacatccaataataatgtgccacgtttttaaatgatgtcatgt 29263396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 47329705 - 47329676
Alignment:
Q  17 agttatcctacatccaataataatgcgcca 46  Q
    ||||||||||||||||||||||||||||||    
T  47329705 agttatcctacatccaataataatgcgcca 47329676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 34095892 - 34095860
Alignment:
Q  17 agttatcctacatccaataataatgcgccacgt 49  Q
    ||||||||||||| |||||||||||||||||||    
T  34095892 agttatcctacattcaataataatgcgccacgt 34095860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 158; Significance: 6e-84; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 260 - 433
Target Start/End: Original strand, 14805859 - 14806032
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  14805859 tatttcattattaaaaataaataaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaataac 14805958  T
Q  360 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaattaacaccaaagtc 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  14805959 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaatcaacacaaaagtc 14806032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 260 - 433
Target Start/End: Complemental strand, 15332547 - 15332374
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  15332547 tatttcattattaaaaataaataaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaataac 15332448  T
Q  360 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaattaacaccaaagtc 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  15332447 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaatcaacacaaaagtc 15332374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 260 - 433
Target Start/End: Complemental strand, 16431684 - 16431511
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  16431684 tatttcattattaaaaataaataaaccaaagaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaataac 16431585  T
Q  360 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaattaacaccaaagtc 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  16431584 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaatcaacacaaaagtc 16431511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 260 - 433
Target Start/End: Complemental strand, 17692427 - 17692254
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  17692427 tatttcattattaaaaataaataaaccaaggaagattatgaacatcatcgccatcttcataccttcatcatcttctttattgaacaaaaaacaaaataac 17692328  T
Q  360 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaattaacaccaaagtc 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  17692327 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaatcaacacaaaagtc 17692254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 260 - 433
Target Start/End: Original strand, 37259957 - 37260130
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  37259957 tatttcattattaaaaataaataaaccaaagaagattatgaacatcatcaccatcttcatacgttcatcatcttctttattgaacaaaaaacaaaataac 37260056  T
Q  360 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaattaacaccaaagtc 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  37260057 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaatcaacacaaaagtc 37260130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 17692655 - 17692489
Alignment:
Q  17 agttatcctacatccaataataatgcgccacgttattgaatgatatcatgtgtgttgactgttgtatcgtatataccgtgtaactacttaatatgtacca 116  Q
    ||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |||||||||||||| || || |||||||||||    
T  17692655 agttatcctacatccaataataatgcgccacattgttgaatgatgtcatgtgtgttgactgttgtatggtatataccgtgtatctgctcaatatgtacca 17692556  T
Q  117 ccgtagactaacttttttgaactatcagattaagcaattcactagtgttattgtgttcataatctcc 183  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17692555 ccgtagactagcttttttgaactatcagattaagcaattcactagtgttattgtgttcataatctcc 17692489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 37259714 - 37259880
Alignment:
Q  17 agttatcctacatccaataataatgcgccacgttattgaatgatatcatgtgtgttgactgttgtatcgtatataccgtgtaactacttaatatgtacca 116  Q
    ||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |||||||||||||| || || |||||||||||    
T  37259714 agttatcctacatccaataataatgcgccacattgttgaatgatgtcatgtgtgttgactgttgtatggtatataccgtgtatctgctcaatatgtacca 37259813  T
Q  117 ccgtagactaacttttttgaactatcagattaagcaattcactagtgttattgtgttcataatctcc 183  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37259814 ccgtagactagcttttttgaactatcagattaagcaattcactagtgttattgtgttcataatctcc 37259880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 16431912 - 16431746
Alignment:
Q  17 agttatcctacatccaataataatgcgccacgttattgaatgatatcatgtgtgttgactgttgtatcgtatataccgtgtaactacttaatatgtacca 116  Q
    ||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| ||||| |||||||| || || |||||||||||    
T  16431912 agttatcctacatccaataataatgcgccacattgttgaatgatgtcatgtgtgttgactgttgtatggtatacaccgtgtatctgctcaatatgtacca 16431813  T
Q  117 ccgtagactaacttttttgaactatcagattaagcaattcactagtgttattgtgttcataatctcc 183  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16431812 ccgtagactagcttttttgaactatcagattaagcaattcactagtgttattgtgttcataatctcc 16431746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 14805617 - 14805782
Alignment:
Q  17 agttatcctacatccaataataatgcgccacgttattgaatgatatcatgtgtgttgactgttgtatcgtatataccgtgtaactacttaatatgtacca 116  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||  ||||| || || |||||||||||    
T  14805617 agttatcctacatccaataataatgcgccacattattgaatgatgtcatgtgtgttgactgttgtatggtatataa-gtgtatctgctcaatatgtacca 14805715  T
Q  117 ccgtagactaacttttttgaactatcagattaagcaattcactagtgttattgtgttcataatctcc 183  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14805716 ccgtagactagcttttttgaactatcagattaaacaattcactagtgttattgtgttcataatctcc 14805782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 15332794 - 15332632
Alignment:
Q  17 agttatcctacatccaataataatgcgccacgttattgaatgatatcatgtgtgttgactgttgtatcgtatataccgtgtaactacttaatatgtacca 116  Q
    ||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |||||||| ||||| || || |||||| ||||    
T  15332794 agttatcctacatccaataataatgcgccacattgttgaatgatgtcatgtgtgttgactgttgtatggtatatactgtgtatctgctcaatatgcacca 15332695  T
Q  117 ccgtagactaacttttttgaactatcagattaagcaattcactagtgttattgtgttcataat 179  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15332694 ccgtagactagcttttttgaactatcagattaagcaattcactagtgttattgtgttcataat 15332632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 260 - 379
Target Start/End: Complemental strand, 14101753 - 14101634
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||||||||||||||||||| ||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14101753 tatttcattattaaaaataaataaatccaggaagattatgaacatcatcaccatgttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 14101654  T
Q  360 tactcaaatacatctccaaa 379  Q
    ||||| ||| || |||||||    
T  14101653 tactctaattcacctccaaa 14101634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 37080766 - 37080737
Alignment:
Q  17 agttatcctacatccaataataatgcgcca 46  Q
    ||||||||||||||||||||||||||||||    
T  37080766 agttatcctacatccaataataatgcgcca 37080737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 158; Significance: 6e-84; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 260 - 433
Target Start/End: Complemental strand, 12983338 - 12983165
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12983338 tatttcattattaaaaataaataaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaataac 12983239  T
Q  360 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaattaacaccaaagtc 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  12983238 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaatcaacacaaaagtc 12983165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 260 - 433
Target Start/End: Original strand, 45346550 - 45346723
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  45346550 tatttcattattaaaaataaataaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaataaaataac 45346649  T
Q  360 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaattaacaccaaagtc 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  45346650 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaatcaacacaaaagtc 45346723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 45346307 - 45346473
Alignment:
Q  17 agttatcctacatccaataataatgcgccacgttattgaatgatatcatgtgtgttgactgttgtatcgtatataccgtgtaactacttaatatgtacca 116  Q
    ||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |||||||||||||| || || |||||||||||    
T  45346307 agttatcctacatccaataataatgcgccacattgttgaatgatgtcatgtgtgttgactgttgtatggtatataccgtgtatctgctcaatatgtacca 45346406  T
Q  117 ccgtagactaacttttttgaactatcagattaagcaattcactagtgttattgtgttcataatctcc 183  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45346407 ccgtagactagcttttttgaactatcagattaagcaattcactagtgttattgtgttcataatctcc 45346473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 260 - 417
Target Start/End: Complemental strand, 39242410 - 39242253
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||||||||||||||||||| ||||| | ||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  39242410 tatttcattattaaaaataaataaacccaagaagactatgaacatcatcaccatcttcatacattcttcatcttctttattgaacaaaaaacaaaatagc 39242311  T
Q  360 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttct 417  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39242310 tactcaaatacacctccaaataacatgaatctcaatattttcttcatctccattttct 39242253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 260 - 404
Target Start/End: Complemental strand, 17015828 - 17015684
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17015828 tatttcattattaaaaataaataaacccaagaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 17015729  T
Q  360 tactcaaatacatctccaaataacatgaatctcaatattttcttc 404  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  17015728 tactcaaatacacctccaaataacatgaatctcaatattttcttc 17015684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 12983581 - 12983415
Alignment:
Q  17 agttatcctacatccaataataatgcgccacgttattgaatgatatcatgtgtgttgactgttgtatcgtatataccgtgtaactacttaatatgtacca 116  Q
    ||||||||||||| ||||||||||||||||| || ||||||||| |||||||||||||||||||||| |||||||| ||||| || || |||||||||||    
T  12983581 agttatcctacattcaataataatgcgccacattgttgaatgatgtcatgtgtgttgactgttgtatggtatatactgtgtatctgctcaatatgtacca 12983482  T
Q  117 ccgtagactaacttttttgaactatcagattaagcaattcactagtgttattgtgttcataatctcc 183  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12983481 ccgtagattagcttttttgaactatcagattaagcaattcactagtgttattgtgttcataatctcc 12983415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 260 - 417
Target Start/End: Original strand, 45319959 - 45320116
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||| ||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45319959 tatttaattattaaaaataaataaatccaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaatcaaaatagc 45320058  T
Q  360 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttct 417  Q
    |||||||||||| ||||||||| ||| |||||||||||| ||||||||| ||||||||    
T  45320059 tactcaaatacacctccaaatagcataaatctcaatattatcttcatcttcattttct 45320116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 23 - 173
Target Start/End: Complemental strand, 39242667 - 39242517
Alignment:
Q  23 cctacatccaataataatgcgccacgttattgaatgatatcatgtgtgttgactgttgtatcgtatataccgtgtaactacttaatatgtaccaccgtag 122  Q
    ||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||| ||||||||| |||| || || |||||||||||||||||    
T  39242667 cctacatccaataataatgtgccacgttgttgaatgatgtcatgtgtgttgactgttgtatagtatataccatgtacctgctcaatatgtaccaccgtag 39242568  T
Q  123 actaacttttttgaactatcagattaagcaattcactagtgttattgtgtt 173  Q
    |||||||||||||||| |||||||||| ||  |||||||||||||||||||    
T  39242567 actaacttttttgaaccatcagattaaacacctcactagtgttattgtgtt 39242517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 260 - 367
Target Start/End: Complemental strand, 27289666 - 27289559
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27289666 tatttcattattaaaaataaataaacccaggaaaattatgaacatcatcaccatattcataccttcatcatcttctttattgaacaaaaaacaaaatagc 27289567  T
Q  360 tactcaaa 367  Q
    ||||||||    
T  27289566 tactcaaa 27289559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 22105435 - 22105583
Alignment:
Q  17 agttatcctacatccaataataatgcgccacgttattgaatgatatcatgtgtgttgactgttgtatcgtatataccgtgtaactacttaatatgtacca 116  Q
    |||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||| | ||| || ||||||||||||||  | || ||||||| | |    
T  22105435 agttatcctacatccaataataatgcgccatgtttttgaatgatgtcatgtgtgttgattattgcatggtatataccgtgtacgtgctcaatatgttcta 22105534  T
Q  117 ccgtagactaacttttttgaactatcagattaagcaattcactagtgtt 165  Q
    || |||||||||||||||||||||||||||||||||  |||||||||||    
T  22105535 ccatagactaacttttttgaactatcagattaagcacatcactagtgtt 22105583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 260 - 379
Target Start/End: Original strand, 52382932 - 52383050
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||| ||||||||||||||| ||| | |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  52382932 tatttaattattaaaaataaataaatccaggaagattatgaacatcatcaccatgttcataccttcatcat-ttctttattgaacaaaaaacaaaatagc 52383030  T
Q  360 tactcaaatacatctccaaa 379  Q
    ||||| ||| || |||||||    
T  52383031 tactctaattcacctccaaa 52383050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 62 - 173
Target Start/End: Complemental strand, 49410528 - 49410417
Alignment:
Q  62 tcatgtgtgttgactgttgtatcgtatataccgtgtaactacttaatatgtaccaccgtagactaacttttttgaactatcagattaagcaattcactag 161  Q
    ||||||||| ||| ||| | || |||| ||||||||| || || ||||||| |||| ||| |||| ||||||||||| |||||||||||||  |||||||    
T  49410528 tcatgtgtgctgattgtggaatggtatgtaccgtgtacctgctcaatatgttccactgtatactagcttttttgaaccatcagattaagcacctcactag 49410429  T
Q  162 tgttattgtgtt 173  Q
    || |||||||||    
T  49410428 tgctattgtgtt 49410417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 47036239 - 47036160
Alignment:
Q  94 gtgtaactacttaatatgtaccaccgtagactaacttttttgaactatcagattaagcaattcactagtgttattgtgtt 173  Q
    ||||| || |||||||||| ||| ||||||||| ||||||||||| |||||||||| ||  ||| |||||||||||||||    
T  47036239 gtgtacctgcttaatatgttccatcgtagactatcttttttgaaccatcagattaaacacatcaatagtgttattgtgtt 47036160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 45319760 - 45319804
Alignment:
Q  129 ttttttgaactatcagattaagcaattcactagtgttattgtgtt 173  Q
    ||||||||||||||| ||||||||  |||||||||||||||||||    
T  45319760 ttttttgaactatcaaattaagcacctcactagtgttattgtgtt 45319804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 154; Significance: 2e-81; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 260 - 433
Target Start/End: Complemental strand, 20135229 - 20135056
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  20135229 tatttcattattaaaaataaataaaccaaggaagattatgaacatcatcaccatcttcataccttcatcattttctttattgaacaaaaaacaaaataac 20135130  T
Q  360 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaattaacaccaaagtc 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  20135129 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaatcaacacaaaagtc 20135056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 260 - 433
Target Start/End: Original strand, 55917676 - 55917849
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  55917676 tatttcattattaaaaataaataaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttttttattgaacaaaaaacaaaataac 55917775  T
Q  360 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaattaacaccaaagtc 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  55917776 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaatcaacacaaaagtc 55917849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 20135473 - 20135306
Alignment:
Q  16 cagttatcctacatccaataataatgcgccacgttattgaatgatatcatgtgtgttgactgttgtatcgtatataccgtgtaactacttaatatgtacc 115  Q
    |||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |||||||||||||| || || ||||||||||    
T  20135473 cagttatcctacatccaataataatgcgccacattgttgaatgatgtcatgtgtgttgactgttgtatggtatataccgtgtatctgctcaatatgtacc 20135374  T
Q  116 accgtagactaacttttttgaactatcagattaagcaattcactagtgttattgtgttcataatctcc 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  20135373 accgtagactaacttttttgaactatcagattaagcaattcactagtgttattggggtcataatctcc 20135306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 260 - 417
Target Start/End: Original strand, 42063344 - 42063501
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||| ||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42063344 tattttattattaaaaataaataaatcgaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaatcaaaatagc 42063443  T
Q  360 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttct 417  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  42063444 tactcaaatacacctccaaataacatgaatctcaatattatcttcatctccattttct 42063501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 260 - 417
Target Start/End: Original strand, 47028443 - 47028600
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||| ||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  47028443 tattttattattaaaaataaataaatcgaggaaggttatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaatcaaaatagc 47028542  T
Q  360 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttct 417  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  47028543 tactcaaatacacctccaaataacatgaatctcaatattatcttcatctccattttct 47028600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 55917444 - 55917606
Alignment:
Q  17 agttatcctacatccaataataatgcgccacgttattgaatgatatcatgtgtgttgactgttgtatcgtatataccgtgtaactacttaatatgtacca 116  Q
    ||||||||||||| ||||||||||||||||  || ||||||||| |||||||||||||||||||||| |||||||||||||| || || |||||| ||||    
T  55917444 agttatcctacattcaataataatgcgccaaattgttgaatgatgtcatgtgtgttgactgttgtatggtatataccgtgtatctgctcaatatgcacca 55917543  T
Q  117 ccgtagactaacttttttgaactatcagattaagcaattcactagtgttattgtgttcataat 179  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55917544 ccgtagactagcttttttgaactatcagattaagcaattcactagtgttattgtgttcataat 55917606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 28683116 - 28682960
Alignment:
Q  17 agttatcctacatccaataataatgcgccacgttattgaatgatatcatgtgtgttgactgttgtatcgtatataccgtgtaactacttaatatgtacca 116  Q
    ||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||| |||||||| |||||||||||||| || || |||||||||||    
T  28683116 agttatcctacatccaataataatgcgtcacgttgttgaatgatgtcatgtgtgttgattgttgtatggtatataccgtgtacctgctcaatatgtacca 28683017  T
Q  117 ccgtagactaacttttttgaactatcagattaagcaattcactagtgttattgtgtt 173  Q
    ||||||| || ||||||||||| ||| |||||||||| |||||||||||||||||||    
T  28683016 ccgtagattagcttttttgaaccatcggattaagcaaatcactagtgttattgtgtt 28682960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 260 - 364
Target Start/End: Complemental strand, 4922292 - 4922188
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||||||||||||||||||| ||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4922292 tatttcattattaaaaataaataaatccaggaagattatgaacatcatcaccatgttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 4922193  T
Q  360 tactc 364  Q
    |||||    
T  4922192 tactc 4922188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 260 - 379
Target Start/End: Complemental strand, 27296071 - 27295953
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||| ||||||||||||||| ||| |  ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  27296071 tatttaattattaaaaataaataaatcctggaagattatgaacatcatcaccatgttcataccttcatcat-ttctttattgaacaaaaaacaaaatagc 27295973  T
Q  360 tactcaaatacatctccaaa 379  Q
    ||||| ||| || |||||||    
T  27295972 tactctaattcacctccaaa 27295953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 260 - 358
Target Start/End: Complemental strand, 28682868 - 28682770
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatag 358  Q
    ||||||||||||||||||||| ||||| |  |||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||    
T  28682868 tatttcattattaaaaataaataaacctaaaaagattatgaacatcatcaccatcttgataccttaatcatcttctttattgaataaaaaacaaaatag 28682770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 352 - 433
Target Start/End: Complemental strand, 28682749 - 28682668
Alignment:
Q  352 aaaatagctactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaattaacaccaaagtc 433  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| ||||||    
T  28682749 aaaatagatactcaaatacatctccaaataatatgaatctcaatattttcttcatttccattttctaatcaacacaaaagtc 28682668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 260 - 330
Target Start/End: Original strand, 45988466 - 45988536
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcat 330  Q
    ||||||||||||||||||||| ||| | | ||| |||||||||||||||||||||||||||||||||||||    
T  45988466 tatttcattattaaaaataaataaatccatgaaaattatgaacatcatcaccatcttcataccttcatcat 45988536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 24226970 - 24227058
Alignment:
Q  85 gtatataccgtgtaactacttaatatgtaccaccgtagactaacttttttgaactatcagattaagcaattcactagtgttattgtgtt 173  Q
    |||| ||||||||| || || ||||||| ||||||||||||||||||||||||| |||||||||||||  |||||| |||||| |||||    
T  24226970 gtatgtaccgtgtatctgctcaatatgttccaccgtagactaacttttttgaaccatcagattaagcacatcactaatgttatcgtgtt 24227058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 386
Target Start/End: Original strand, 8407410 - 8407502
Alignment:
Q  295 ttatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaa-aatagctactcaaatacatctccaaataacatg 386  Q
    |||||||||||   | |||||||||| |||||||||||||||| || ||||||||| || |||   |||| ||||||| ||||||||||||||    
T  8407410 ttatgaacatctcaatcatcttcatatcttcatcatcttctttcttaaacaaaaaataataatgtttactgaaatacacctccaaataacatg 8407502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 42063156 - 42063200
Alignment:
Q  129 ttttttgaactatcagattaagcaattcactagtgttattgtgtt 173  Q
    |||||||||| |||||||||||||  |||||||||||||||||||    
T  42063156 ttttttgaaccatcagattaagcatctcactagtgttattgtgtt 42063200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 47028253 - 47028297
Alignment:
Q  129 ttttttgaactatcagattaagcaattcactagtgttattgtgtt 173  Q
    |||||||||| |||||||||||||  |||||||||||||||||||    
T  47028253 ttttttgaaccatcagattaagcacctcactagtgttattgtgtt 47028297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 24226913 - 24226943
Alignment:
Q  17 agttatcctacatccaataataatgcgccac 47  Q
    |||||||||||||||||||||||||||||||    
T  24226913 agttatcctacatccaataataatgcgccac 24226943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 154; Significance: 2e-81; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 260 - 433
Target Start/End: Original strand, 39831487 - 39831660
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  39831487 tatttcattattaaaaataaataaaccaaggaagattatgaacatcatcaccatcttcataccttcatcattttctttattgaacaaaaaacaaaataac 39831586  T
Q  360 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaattaacaccaaagtc 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  39831587 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaatcaacacaaaagtc 39831660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 39831243 - 39831410
Alignment:
Q  16 cagttatcctacatccaataataatgcgccacgttattgaatgatatcatgtgtgttgactgttgtatcgtatataccgtgtaactacttaatatgtacc 115  Q
    |||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |||||||||||||| || || ||||||||||    
T  39831243 cagttatcctacatccaataataatgcgccacattgttgaatgatgtcatgtgtgttgactgttgtatggtatataccgtgtatctgctcaatatgtacc 39831342  T
Q  116 accgtagactaacttttttgaactatcagattaagcaattcactagtgttattgtgttcataatctcc 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39831343 accgtagactaacttttttgaactatcagattaagcaattcactagtgttattgtgttcataatctcc 39831410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 260 - 379
Target Start/End: Original strand, 50359796 - 50359915
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||||||||||||||||||| ||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  50359796 tatttcattattaaaaataaataaatccaggaagattatgaacatcatcaccatgttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 50359895  T
Q  360 tactcaaatacatctccaaa 379  Q
    ||||| ||| || |||||||    
T  50359896 tactctaattcacctccaaa 50359915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 260 - 379
Target Start/End: Original strand, 50646942 - 50647061
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    |||||||||||||||| |||| ||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  50646942 tatttcattattaaaagtaaataaatccaggaagattatgaacatcatcaccatgttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 50647041  T
Q  360 tactcaaatacatctccaaa 379  Q
    ||||| ||| || |||||||    
T  50647042 tactctaattcacctccaaa 50647061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 260 - 379
Target Start/End: Original strand, 22427048 - 22427167
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    |||||||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||    
T  22427048 tatttcattattgaaaataaataaacccaggaagattatgaacatcatcaccatgttcatactttcatcatcttttttattgaacaaaaaacaaaatagc 22427147  T
Q  360 tactcaaatacatctccaaa 379  Q
    ||||| ||| || |||||||    
T  22427148 tactctaattcacctccaaa 22427167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 297 - 417
Target Start/End: Original strand, 15071373 - 15071493
Alignment:
Q  297 atgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagctactcaaatacatctccaaataacatgaatctcaata 396  Q
    |||||||||||||||||||||||| ||||||||||||| |  || ||||||| | | ||||   ||||||||||| |||||||||| ||||||||||| |    
T  15071373 atgaacatcatcaccatcttcatatcttcatcatcttcatccttaaacaaaagaaataataatcactcaaatacacctccaaataatatgaatctcaaca 15071472  T
Q  397 ttttcttcatctccattttct 417  Q
    || ||||||||| ||||||||    
T  15071473 ttatcttcatcttcattttct 15071493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 12945457 - 12945368
Alignment:
Q  85 gtatataccgtgtaactacttaatatgtaccaccgtagactaactt-ttttgaactatcagattaagcaattcactagtgttattgtgtt 173  Q
    |||| ||||||||| || || ||||||| ||||||||||||||||| |||||||| |||||||||||||  |||||| |||||| |||||    
T  12945457 gtatgtaccgtgtacctgctcaatatgttccaccgtagactaactttttttgaaccatcagattaagcacatcactaatgttatcgtgtt 12945368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 33213492 - 33213603
Alignment:
Q  62 tcatgtgtgttgactgttgtatcgtatataccgtgtaactacttaatatgtaccaccgtagactaacttttttgaactatcagattaagcaattcactag 161  Q
    ||||||||| ||| ||||| || |||| ||  ||||| || || ||||||| ||| |||||| || ||||||||||| |||||||||| ||  |||||||    
T  33213492 tcatgtgtgctgattgttgcatggtatgtattgtgtacctgctcaatatgttccatcgtagattatcttttttgaaccatcagattaaacacatcactag 33213591  T
Q  162 tgttattgtgtt 173  Q
    ||||||||||||    
T  33213592 tgttattgtgtt 33213603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 173
Target Start/End: Complemental strand, 29835784 - 29835675
Alignment:
Q  63 catgtgtgttgactgttgtatcgtatataccgtgtaactacttaatatgtaccaccgtagactaacttttttgaactatcagattaagcaattcactagt 162  Q
    |||||||| ||| ||||| || |||| ||  ||||| || || ||||||| ||| ||||||||| ||||||||||| |||||||||| ||  ||||||||    
T  29835784 catgtgtgctgattgttgcatggtatgtattgtgtacctgctcaatatgt-ccatcgtagactagcttttttgaaccatcagattaaacacctcactagt 29835686  T
Q  163 gttattgtgtt 173  Q
    |||||| ||||    
T  29835685 gttattttgtt 29835675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 12945514 - 12945484
Alignment:
Q  17 agttatcctacatccaataataatgcgccac 47  Q
    |||||||||||||||||||||||||||||||    
T  12945514 agttatcctacatccaataataatgcgccac 12945484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 170
Target Start/End: Complemental strand, 53284193 - 53284152
Alignment:
Q  129 ttttttgaactatcagattaagcaattcactagtgttattgt 170  Q
    ||||||||||||||||||||||||  | ||||||||||||||    
T  53284193 ttttttgaactatcagattaagcaccttactagtgttattgt 53284152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 29702542 - 29702586
Alignment:
Q  129 ttttttgaactatcagattaagcaattcactagtgttattgtgtt 173  Q
    ||||||||||||||||||||| ||  |||||||| ||||||||||    
T  29702542 ttttttgaactatcagattaaacacctcactagtattattgtgtt 29702586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 260 - 433
Target Start/End: Original strand, 25382 - 25555
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  25382 tattttattattaaaaattaataaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaataac 25481  T
Q  360 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaattaacaccaaagtc 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  25482 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaatcaacacaaaagtc 25555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 25135 - 25297
Alignment:
Q  17 agttatcctacatccaataataatgcgccacgttattgaatgatatcatgtgtgttgactgttgtatcgtatataccgtgtaactacttaatatgtacca 116  Q
    ||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |||||||| ||||| || || |||||| ||||    
T  25135 agttatcctacatccaataataatgcgccacattgttgaatgatgtcatgtgtgttgactgttgtatggtatatactgtgtatctgctcaatatgcacca 25234  T
Q  117 ccgtagactaacttttttgaactatcagattaagcaattcactagtgttattgtgttcataat 179  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25235 ccgtagactagcttttttgaactatcagattaagcaattcactagtgttattgtgttcataat 25297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 150; Significance: 4e-79; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 260 - 433
Target Start/End: Original strand, 24782999 - 24783172
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  24782999 tattttattattaaaaattaataaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaataac 24783098  T
Q  360 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaattaacaccaaagtc 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  24783099 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttctaatcaacacaaaagtc 24783172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 24782752 - 24782914
Alignment:
Q  17 agttatcctacatccaataataatgcgccacgttattgaatgatatcatgtgtgttgactgttgtatcgtatataccgtgtaactacttaatatgtacca 116  Q
    ||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |||||||| ||||| || || |||||| ||||    
T  24782752 agttatcctacatccaataataatgcgccacattgttgaatgatgtcatgtgtgttgactgttgtatggtatatactgtgtatctgctcaatatgcacca 24782851  T
Q  117 ccgtagactaacttttttgaactatcagattaagcaattcactagtgttattgtgttcataat 179  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24782852 ccgtagactagcttttttgaactatcagattaagcaattcactagtgttattgtgttcataat 24782914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 260 - 379
Target Start/End: Complemental strand, 30628469 - 30628350
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30628469 tatttcattattaaaaataaataaacccaggaagattatgaacatcatcaccatgttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 30628370  T
Q  360 tactcaaatacatctccaaa 379  Q
    ||||||||| || |||||||    
T  30628369 tactcaaattcacctccaaa 30628350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 41406092 - 41406180
Alignment:
Q  85 gtatataccgtgtaactacttaatatgtaccaccgtagactaacttttttgaactatcagattaagcaattcactagtgttattgtgtt 173  Q
    |||| ||||||||| || || ||||||| ||||||||||||||||||||||||| |||||||||||||  |||||| |||||| |||||    
T  41406092 gtatgtaccgtgtacctgctcaatatgttccaccgtagactaacttttttgaaccatcagattaagcacatcactaatgttatcgtgtt 41406180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 1835997 - 1835909
Alignment:
Q  85 gtatataccgtgtaactacttaatatgtaccaccgtagactaacttttttgaactatcagattaagcaattcactagtgttattgtgtt 173  Q
    |||| ||||||||| || || ||||||| ||||||||||||||||||||||||| |||||||||| ||  |||||| |||||| |||||    
T  1835997 gtatgtaccgtgtacctgctcaatatgttccaccgtagactaacttttttgaaccatcagattaaacacatcactaatgttatcgtgtt 1835909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 40321477 - 40321389
Alignment:
Q  85 gtatataccgtgtaactacttaatatgtaccaccgtagactaacttttttgaactatcagattaagcaattcactagtgttattgtgtt 173  Q
    |||| ||||||||| || || ||||||| ||||||||||||||||||||||||| |||||||||| ||  |||||| |||||| |||||    
T  40321477 gtatgtaccgtgtacctgctcaatatgttccaccgtagactaacttttttgaaccatcagattaaacacatcactaatgttatcgtgtt 40321389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 31480537 - 31480648
Alignment:
Q  62 tcatgtgtgttgactgttgtatcgtatataccgtgtaactacttaatatgtaccaccgtagactaacttttttgaactatcagattaagcaattcactag 161  Q
    ||||||||| ||| ||||| || |||| ||  ||||| || || ||||||| ||| ||||||||| ||||||||||| |||||||||||||  ||||||     
T  31480537 tcatgtgtgctgattgttgcatggtatgtattgtgtacctgctcaatatgttccatcgtagactagcttttttgaaccatcagattaagcacctcactaa 31480636  T
Q  162 tgttattgtgtt 173  Q
    ||||||||||||    
T  31480637 tgttattgtgtt 31480648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 171
Target Start/End: Original strand, 6768025 - 6768111
Alignment:
Q  85 gtatataccgtgtaactacttaatatgtaccaccgtagactaacttttttgaactatcagattaagcaattcactagtgttattgtg 171  Q
    |||| ||||||||| || || ||||||| |||||||| |||| ||||||||||| |||||||||| ||  ||||||||| |||||||    
T  6768025 gtatgtaccgtgtacctgctcaatatgttccaccgtaaactagcttttttgaaccatcagattaaacacctcactagtgctattgtg 6768111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 1836054 - 1836024
Alignment:
Q  17 agttatcctacatccaataataatgcgccac 47  Q
    |||||||||||||||||||||||||||||||    
T  1836054 agttatcctacatccaataataatgcgccac 1836024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 40321534 - 40321504
Alignment:
Q  17 agttatcctacatccaataataatgcgccac 47  Q
    |||||||||||||||||||||||||||||||    
T  40321534 agttatcctacatccaataataatgcgccac 40321504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 41406035 - 41406065
Alignment:
Q  17 agttatcctacatccaataataatgcgccac 47  Q
    |||||||||||||||||||||||||||||||    
T  41406035 agttatcctacatccaataataatgcgccac 41406065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 39885766 - 39885722
Alignment:
Q  129 ttttttgaactatcagattaagcaattcactagtgttattgtgtt 173  Q
    ||||||||||||||||||||| ||  |||||||| ||||||||||    
T  39885766 ttttttgaactatcagattaaacacctcactagtattattgtgtt 39885722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 126; Significance: 8e-65; HSPs: 2)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 260 - 417
Target Start/End: Original strand, 7322 - 7479
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||| ||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7322 tattttattattaaaaataaataaatcgaggaaggttatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaatcaaaatagc 7421  T
Q  360 tactcaaatacatctccaaataacatgaatctcaatattttcttcatctccattttct 417  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  7422 tactcaaatacacctccaaataacatgaatctcaatattatcttcatctccattttct 7479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 7132 - 7176
Alignment:
Q  129 ttttttgaactatcagattaagcaattcactagtgttattgtgtt 173  Q
    |||||||||| |||||||||||||  |||||||||||||||||||    
T  7132 ttttttgaaccatcagattaagcacctcactagtgttattgtgtt 7176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 6e-47; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 260 - 379
Target Start/End: Complemental strand, 12945437 - 12945318
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  12945437 tatttcattattaaaaataaataaacccaggaagattatgaacatcatcaccatgttcataccttcatcatcttctttattgaacagaaaacaaaatagc 12945338  T
Q  360 tactcaaatacatctccaaa 379  Q
    ||||||||| || |||||||    
T  12945337 tactcaaattcacctccaaa 12945318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 260 - 330
Target Start/End: Original strand, 7124681 - 7124751
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcat 330  Q
    ||||||||||||||||||||| ||| | | ||| |||||||||||||||||||||||||||||||||||||    
T  7124681 tatttcattattaaaaataaataaatccatgaaaattatgaacatcatcaccatcttcataccttcatcat 7124751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 945051 - 944992
Alignment:
Q  114 ccaccgtagactaacttttttgaactatcagattaagcaattcactagtgttattgtgtt 173  Q
    ||||||||||||| ||||||||||| |||||||||||||  ||| |||||||||||||||    
T  945051 ccaccgtagactagcttttttgaaccatcagattaagcacctcattagtgttattgtgtt 944992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 7124487 - 7124532
Alignment:
Q  129 ttttttgaactatcagattaagcaattcactagtgttattgtgttc 174  Q
    |||||||||| |||| ||||||||  ||||||||||||||||||||    
T  7124487 ttttttgaaccatcaaattaagcacctcactagtgttattgtgttc 7124532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0685 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 260 - 379
Target Start/End: Original strand, 6944 - 7062
Alignment:
Q  260 tatttcattattaaaaataaacaaaccaaggaagattatgaacatcatcaccatcttcataccttcatcatcttctttattgaacaaaaaacaaaatagc 359  Q
    ||||| ||||||||||||||| ||| | |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  6944 tatttaattattaaaaataaataaatccaggaagattatgaacatcatcaccatgttcataccttcatcat-ttctttattgaacaaaaaacaaaatagc 7042  T
Q  360 tactcaaatacatctccaaa 379  Q
    ||||| ||| || |||||||    
T  7043 tactctaattcacctccaaa 7062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 1876 - 1831
Alignment:
Q  129 ttttttgaactatcagattaagcaattcactagtgttattgtgttc 174  Q
    |||||||||| |||| ||||||||  ||||||||||||||||||||    
T  1876 ttttttgaaccatcaaattaagcacctcactagtgttattgtgttc 1831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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