View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7548_high_2 (Length: 282)
Name: NF7548_high_2
Description: NF7548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7548_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 28 - 272
Target Start/End: Original strand, 31497921 - 31498169
Alignment:
| Q |
28 |
aatagataattatattcgagatactatcagatactaaatataggttcctcatttgcgacgctataagactctagccttttctagtagactcaatcctgat |
127 |
Q |
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| T |
31497921 |
aatagataattatattcgagatactatcagatactaaatataggttcctcatttgcgaccctataagactctagccttttctagtagactgaatcctgat |
31498020 |
T |
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| Q |
128 |
tgagctttatctttttgtggaat----aacgtttttaaagttcaaacaaatttaaagaaaaaatcttaaccgtcatacctaaagnnnnnnntatttaaca |
223 |
Q |
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| T |
31498021 |
tgagctttatctttttgtggaataacgaacgtttttaaagttcaaacaaatttaaagaaaaaatcttaaccgtcatacctaaagaataaaatatttaaca |
31498120 |
T |
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| Q |
224 |
taattttttgaaaaaagacaatgatcgtcgcccattaaatttatctctg |
272 |
Q |
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| T |
31498121 |
taattttttgaaaaaagacaaagatcgtcgcccattaaatttatctctg |
31498169 |
T |
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