View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7548_low_2 (Length: 282)

Name: NF7548_low_2
Description: NF7548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7548_low_2
NF7548_low_2
[»] chr2 (35 HSPs)
chr2 (13-265)||(9291761-9292013)
chr2 (10-264)||(8573568-8573828)
chr2 (10-262)||(10371679-10371937)
chr2 (10-265)||(10347600-10347864)
chr2 (10-265)||(9065656-9065917)
chr2 (10-253)||(9061204-9061450)
chr2 (139-262)||(12012729-12012849)
chr2 (136-265)||(12019062-12019191)
chr2 (161-265)||(9284389-9284493)
chr2 (84-262)||(9274342-9274520)
chr2 (136-262)||(11987661-11987787)
chr2 (161-254)||(10335706-10335799)
chr2 (161-265)||(9315858-9315962)
chr2 (10-220)||(16268952-16269168)
chr2 (10-121)||(9284253-9284370)
chr2 (139-254)||(12006295-12006410)
chr2 (161-265)||(9320821-9320925)
chr2 (168-264)||(10352949-10353045)
chr2 (10-125)||(9320940-9321061)
chr2 (163-264)||(10341189-10341293)
chr2 (158-223)||(7115841-7115906)
chr2 (161-265)||(9328438-9328542)
chr2 (161-265)||(8579704-8579808)
chr2 (13-125)||(9328557-9328675)
chr2 (136-266)||(9364466-9364596)
chr2 (10-127)||(10335812-10335923)
chr2 (10-53)||(9274557-9274600)
chr2 (10-55)||(12012609-12012654)
chr2 (10-61)||(10353137-10353188)
chr2 (10-53)||(12006181-12006224)
chr2 (10-53)||(12018951-12018994)
chr2 (70-127)||(8579616-8579673)
chr2 (29-127)||(9315975-9316079)
chr2 (13-58)||(7115708-7115753)
chr2 (10-46)||(11987550-11987586)
[»] chr3 (2 HSPs)
chr3 (10-263)||(37462306-37462568)
chr3 (78-127)||(39427596-39427645)
[»] scaffold0667 (1 HSPs)
scaffold0667 (26-265)||(4292-4534)
[»] chr8 (2 HSPs)
chr8 (165-265)||(41966911-41967011)
chr8 (10-125)||(41966768-41966889)
[»] chr1 (9 HSPs)
chr1 (161-265)||(29453503-29453607)
chr1 (161-265)||(29467979-29468083)
chr1 (161-265)||(29423104-29423208)
chr1 (10-124)||(29467843-29467963)
chr1 (161-266)||(29443520-29443625)
chr1 (10-125)||(29443384-29443505)
chr1 (10-54)||(29423300-29423344)
chr1 (70-127)||(29453433-29453490)
chr1 (10-54)||(29453367-29453411)
[»] chr7 (3 HSPs)
chr7 (10-250)||(45243524-45243778)
chr7 (10-250)||(45230262-45230511)
chr7 (10-265)||(45237765-45238029)
[»] chr4 (2 HSPs)
chr4 (10-62)||(26574888-26574940)
chr4 (165-262)||(26574700-26574797)


Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 265
Target Start/End: Complemental strand, 9292013 - 9291761
Alignment:
Q  13 aatatggttctagagatagttggtgtaaactttttactttggttaaatcgcagttcactttgaaatctttgaggcctttatgttattctagggatggaag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9292013 aatatggttctagagatagttggtgtaaactttttactttggttaaatcgcggttcactttgaaatctttgaggcctttatgttattctagggatggaag 9291914  T
Q  113 taaggttctgttggacggaactcaggttttgttggaggtaaatcataggaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaagga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9291913 taaggttctgttggacggaactcaggttttgttggaggtaaatcataggaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaagga 9291814  T
Q  213 attcctaatttggatgaagctatgatttgtgttgaaagtcttctaccaccttc 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9291813 attcctaatttggatgaagctatgatttgtgttgaaagtcttctaccaccttc 9291761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 10 - 264
Target Start/End: Original strand, 8573568 - 8573828
Alignment:
Q  10 aagaatatggttctagagatagttggtgtaaactttttactttggttaaatcgcagttcact------ttgaaatctttgaggcctttatgttattctag 103  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||   ||||||      || ||||||| |||||||||| ||||||||||    
T  8573568 aagaatatggttctagagatagttggtgtaaactttttactttcgttaaatcgtgtttcactccacattttaaatcttcgaggcctttaggttattctag 8573667  T
Q  104 ggatggaagtaaggttctgttggacggaactcaggttttgttggaggtaaatcataggaagctgttttggtatgatttgaagagtgaacaaattagttat 203  Q
     ||||||||||||||||||||||| |||| | | ||||||| |||||||  |||||||||||||||||||||||||||||||||||||||| | ||||||    
T  8573668 tgatggaagtaaggttctgttggaaggaattgaagttttgtcggaggtatgtcataggaagctgttttggtatgatttgaagagtgaacaagtcagttat 8573767  T
Q  204 gttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctaccacctt 264  Q
    ||||||||||||||||||| | ||| ||||||| ||||||||| ||||||| |||||||||    
T  8573768 gttgaaggaattcctaattggaatgcagctatgttttgtgttggaagtcttgtaccacctt 8573828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 10 - 262
Target Start/End: Complemental strand, 10371937 - 10371679
Alignment:
Q  10 aagaatatggttctagagatagttggtgtaaactttttactttggttaaatc------gcagttcactttgaaatctttgaggcctttatgttattctag 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||      |   ||  ||||| |||||||||| || || ||||||||| |    
T  10371937 aagaatatggttctagagatagttggtgtaaactttttactttggttaaatcaagtttgggtttacctttggaatctttgagacccttgtgttattctcg 10371838  T
Q  104 ggatggaagtaaggttctgttggacggaactcaggttttgttggaggtaaatcataggaagctgttttggtatgatttgaagagtgaacaaattagttat 203  Q
     |||||||| |||||||| ||||| |||  ||| ||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  10371837 tgatggaaggaaggttcttttggaaggagatcatgttttgttggaggtacaacattggaagctgttttggtatgatttgaagagtgaacaagttagttat 10371738  T
Q  204 gttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctaccacc 262  Q
    |||||||||| | ||||||||||||| |||||| |||||||||  |||||| |||||||    
T  10371737 gttgaaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtaccacc 10371679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 10 - 265
Target Start/End: Complemental strand, 10347864 - 10347600
Alignment:
Q  10 aagaatatggttctagagatagttggtgtaaactttttactttggttaaatcgcagttca------ctttgaaatctttgaggcctttatgttattctag 103  Q
    |||||||||| | |||||||||||||||||||||||||||| ||| | | |||   |||       |||||||||  ||||||||  |||||||||||||    
T  10347864 aagaatatggatgtagagatagttggtgtaaactttttactatggctgagtcgtgtttcgatttacctttgaaattgttgaggcccatatgttattctag 10347765  T
Q  104 ggatggaagtaaggttctgttggacggaactcaggttttgttggaggtaaatcataggaagctgttttggtatgatttgaagagtgaacaaattagttat 203  Q
     |||||||||||||||||||||||  || |||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10347764 tgatggaagtaaggttctgttggaaagagctcatgttttgttggaggtacaacataggaagctgttttggtatgatttgaagagtgaacaaattagttat 10347665  T
Q  204 gttgaaggaat---tcctaatttggatgaagctatgatttgtgttgaaagtcttctaccaccttc 265  Q
    |||||||||||   ||||||| || ||||| ||||| ||||||||| ||||||| | ||||||||    
T  10347664 gttgaaggaattcctcctaatatgaatgaaactatgttttgtgttggaagtcttgtcccaccttc 10347600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 265
Target Start/End: Original strand, 9065656 - 9065917
Alignment:
Q  10 aagaatatggttctagagatagttggtgtaaactttttactttggttaaatcg-----cagttcac-tttgaaatctttgaggcctttatgttattctag 103  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||      |  ||||| ||||| | ||| ||||||| || |||||||  |    
T  9065656 aagaatatggatctagagatagttggtgtaaactttttactttggtcaaatcttgtttccattcacatttgacagcttcgaggcctctaggttattccgg 9065755  T
Q  104 ggatggaagtaaggttctgttggacggaactcaggttttgttggaggtaaatcataggaagctgttttggtatgatttgaagagtgaacaaattagttat 203  Q
     ||||||||||||||||||||||| | || | ||||||||||||||||| |||||  |||||| ||||||||||||||||||||||||||| ||| ||||    
T  9065756 tgatggaagtaaggttctgttggaagcaattgaggttttgttggaggtagatcatcagaagctcttttggtatgatttgaagagtgaacaagttatttat 9065855  T
Q  204 gttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctaccaccttc 265  Q
    ||||||||| ||||||||| | ||||  || |||||||||||||||||||| ||||| ||||    
T  9065856 gttgaaggagttcctaattggaatgacactgtgatttgtgttgaaagtcttgtaccaacttc 9065917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 9061204 - 9061450
Alignment:
Q  10 aagaatatggttctagagatagttggtgtaaactttttactttggttaaatcg-----cagttcac-tttgaaatctttgaggcctttatgttattctag 103  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||     || ||||| |||| | | ||||||||| ||||||||||||||    
T  9061204 aagactatggatctagagatagttggtgtaaactttttactttggttaaatcgtgtttcaattcacctttggactttttgaggccgttatgttattctag 9061303  T
Q  104 ggatggaagtaaggttctgttggacggaactcaggttttgttggaggtaaatcataggaagctgttttggtatgatttgaagagtgaacaaattagttat 203  Q
     |||||| |||||||||||||||| | || ||    |   |||||   || || |||||||||||||||||||||| | |||||||||||| ||||||||    
T  9061304 tgatggaggtaaggttctgttggaagcaaatcc---taacttggataaaactcttaggaagctgttttggtatgatctcaagagtgaacaagttagttat 9061400  T
Q  204 gttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtct 253  Q
    |||||||||||||||||||| |||||||||||| ||| ||||| ||||||    
T  9061401 gttgaaggaattcctaattttgatgaagctatgttttatgttggaagtct 9061450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 139 - 262
Target Start/End: Original strand, 12012729 - 12012849
Alignment:
Q  139 ttttgttggaggtaaatcataggaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctatgat 238  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||   ||| |||||||||||||||||||||||||||| ||||||||||||||    
T  12012729 ttttgttggaggtaaatcataagaagctggtttggtatgatttgaagagt---caagttagttatgttgaaggaattcctaatttcgatgaagctatgat 12012825  T
Q  239 ttgtgttgaaagtcttctaccacc 262  Q
    |||||||| ||||||| |||||||    
T  12012826 ttgtgttggaagtcttgtaccacc 12012849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 136 - 265
Target Start/End: Original strand, 12019062 - 12019191
Alignment:
Q  136 aggttttgttggaggtaaatcataggaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctat 235  Q
    ||||||||||||| ||||||||||  | |||| |||||||||||||||||||| | ||| |||||||||||||||||||||||||||| |||||||| ||    
T  12019062 aggttttgttggatgtaaatcataatatgctggtttggtatgatttgaagagtcagcaagttagttatgttgaaggaattcctaatttcgatgaagccat 12019161  T
Q  236 gatttgtgttgaaagtcttctaccaccttc 265  Q
    ||||||||||| ||||||| ||||||||||    
T  12019162 gatttgtgttggaagtcttgtaccaccttc 12019191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 161 - 265
Target Start/End: Original strand, 9284389 - 9284493
Alignment:
Q  161 gaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctacca 260  Q
    ||||||| |||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  9284389 gaagctggtttggtatgatttgaagagtgagcaagttatttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttgtgcca 9284488  T
Q  261 ccttc 265  Q
    |||||    
T  9284489 ccttc 9284493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 84 - 262
Target Start/End: Complemental strand, 9274520 - 9274342
Alignment:
Q  84 aggcctttatgttattctagggatggaagtaaggttctgttggacggaactcaggttttgttggaggtaaatcataggaagctgttttggtatgatttga 183  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||| ||| ||||    ||||| |||| ||||||| ||| |||||||||||||||    
T  9274520 aggcctttatgttattctagtgatggaagtaaggttctgttggaaggaattcatgtttcaacggagggaaataataggaacctgatttggtatgatttga 9274421  T
Q  184 agagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctaccacc 262  Q
    ||||||||||| |||||| |||| ||||||||||||| ||  ||| | |||| ||||| |||| |||| || |||||||    
T  9274420 agagtgaacaagttagttttgttaaaggaattcctaacttcaatggaactattatttgggttggaagttttgtaccacc 9274342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 136 - 262
Target Start/End: Original strand, 11987661 - 11987787
Alignment:
Q  136 aggttttgttggaggtaaatcataggaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctat 235  Q
    |||||||||||||  | ||||| | ||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||| || |||||||||||    
T  11987661 aggttttgttggatcttaatcacaagaagctggtttggtatgatttgaagagtgaacaatttagttatgttgacggaattcctaaattcgatgaagctat 11987760  T
Q  236 gatttgtgttgaaagtcttctaccacc 262  Q
    ||||||||||| ||||||| |||||||    
T  11987761 gatttgtgttggaagtcttgtaccacc 11987787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 161 - 254
Target Start/End: Complemental strand, 10335799 - 10335706
Alignment:
Q  161 gaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtctt 254  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||    
T  10335799 gaagttgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgacactatgatttgtgttggaagtctt 10335706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 9315962 - 9315858
Alignment:
Q  161 gaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctacca 260  Q
    |||||||||||||| ||| |||| |||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  9315962 gaagctgttttggtgtgacttgatgagtgaacaagttatttatgttgaaggaatttctaatttggatgaagctatgatttgtgttgaaagtcttgtacca 9315863  T
Q  261 ccttc 265  Q
    |||||    
T  9315862 ccttc 9315858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 220
Target Start/End: Complemental strand, 16269168 - 16268952
Alignment:
Q  10 aagaatatggttctagagatagttggtgtaaactttttactttggttaaatcg-----cagttcac-tttgaaatctttgaggcctttatgttattctag 103  Q
    |||| ||||| | ||||||||||||||| ||||||||||| ||||||||||||     || ||||| ||||  || ||  |  ||| || ||||||||||    
T  16269168 aagagtatggatatagagatagttggtgcaaactttttaccttggttaaatcgtgtttcacttcacatttgcgatattcaaatcctataggttattctag 16269069  T
Q  104 ggatggaagtaaggttctgttggacggaactcaggttttgttggaggtaaatcataggaagctgttttggtatgatttgaagagtgaacaaattagttat 203  Q
     ||||||||||||||||| || || |||| | ||||||||||||| ||  || ||| |||| ||||||||||||||||||||||||||| | ||||||||    
T  16269068 tgatggaagtaaggttctctttgaaggaattgaggttttgttggacgtgcattataagaagttgttttggtatgatttgaagagtgaacgagttagttat 16268969  T
Q  204 gttgaaggaattcctaa 220  Q
    |||||||||||||||||    
T  16268968 gttgaaggaattcctaa 16268952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 9284253 - 9284370
Alignment:
Q  10 aagaatatggttctagagatagttggtgtaaactttttactttggttaaatcgcagttcac------tttgaaatctttgaggcctttatgttattctag 103  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||      |||||||||||||||||||||| ||||||||||    
T  9284253 aagaatatggttctagagatagttggtgtaaaatttttactttggttaaatcacggttcactttacgtttgaaatctttgaggcctttaggttattctag 9284352  T
Q  104 ggatggaagtaaggttct 121  Q
     ||||| |||||||||||    
T  9284353 tgatggtagtaaggttct 9284370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 139 - 254
Target Start/End: Original strand, 12006295 - 12006410
Alignment:
Q  139 ttttgttggaggtaaatcataggaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctatgat 238  Q
    ||||||| ||||||||||||| ||||||| ||||||||||||||||||||||| || ||| |||  |||| |||||||| ||||| |||||||| |||||    
T  12006295 ttttgtttgaggtaaatcataagaagctggtttggtatgatttgaagagtgaagaagttaattacattgagggaattccaaatttcgatgaagcgatgat 12006394  T
Q  239 ttgtgttgaaagtctt 254  Q
    |||||||| |||||||    
T  12006395 ttgtgttggaagtctt 12006410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 9320925 - 9320821
Alignment:
Q  161 gaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctacca 260  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||  ||| || |||| ||||||||| ||||||| | |||    
T  9320925 gaagctgttttggtatgatttgaagagtgcacaagttagttatgttgaaggaattcctgatttccatggagttatgttttgtgttggaagtcttgtccca 9320826  T
Q  261 ccttc 265  Q
    |||||    
T  9320825 ccttc 9320821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 10353045 - 10352949
Alignment:
Q  168 ttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctaccacctt 264  Q
    ||||||||||||||| ||||| ||||| ||||||||||| ||| ||||| ||||||||||||  ||||||||||||||| ||||||| |||||||||    
T  10353045 ttttggtatgatttggagagtaaacaagttagttatgttcaagaaattcttaatttggatgacactatgatttgtgttggaagtcttgtaccacctt 10352949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 9321061 - 9320940
Alignment:
Q  10 aagaatatggttctagagatagttggtgtaaactttttactttggttaaatcg------cagttcactttgaaatctttgaggcctttatgttattctag 103  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||       | ||  ||||||||||||||||||||||| ||||||| ||    
T  9321061 aagaatatggttctagagatagttggtgtaaactttttactatggttaaatcgtgttacgatttacctttgaaatctttgaggcctttaggttattcgag 9320962  T
Q  104 ggatggaagtaaggttctgttg 125  Q
     |||||||  |||||| |||||    
T  9320961 tgatggaaaaaaggttttgttg 9320940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 264
Target Start/End: Complemental strand, 10341293 - 10341189
Alignment:
Q  163 agctgttttggtatgatttgaagagtgaacaaattagttat---gttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctacc 259  Q
    |||||||||||||||||||| ||||||||||| ||||||||   ||||||||||||||| |||||||||| |||||||| ||||||| |||| |  ||||    
T  10341293 agctgttttggtatgatttggagagtgaacaagttagttattatgttgaaggaattcctgatttggatgatgctatgatgtgtgttggaagtatagtacc 10341194  T
Q  260 acctt 264  Q
    |||||    
T  10341193 acctt 10341189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 7115841 - 7115906
Alignment:
Q  158 taggaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaattt 223  Q
    |||||||||| ||||||||||||||||||| |||||| |||||| |||||||||||||||||||||    
T  7115841 taggaagctggtttggtatgatttgaagagcgaacaagttagttgtgttgaaggaattcctaattt 7115906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 9328542 - 9328438
Alignment:
Q  161 gaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctacca 260  Q
    ||||||||||| ||||||||| | ||||| |||| ||||||||||||||||||||||| ||||  |||| | |||| ||| ||||| ||||||| |||||    
T  9328542 gaagctgtttttgtatgattttaggagtgcacaagttagttatgttgaaggaattcctgatttccatgatgttatgttttctgttggaagtcttgtacca 9328443  T
Q  261 ccttc 265  Q
    |||||    
T  9328442 ccttc 9328438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 265
Target Start/End: Original strand, 8579704 - 8579808
Alignment:
Q  161 gaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctacca 260  Q
    ||||||||||||||||||| | || |||||| || ||| || |||| ||||||||||||||||  ||||| ||||||||| ||||| ||  |||||||||    
T  8579704 gaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatgaaactatgatttatgttggaacccttctacca 8579803  T
Q  261 ccttc 265  Q
    |||||    
T  8579804 ccttc 8579808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 9328675 - 9328557
Alignment:
Q  13 aatatggttctagagatagttggtgtaaactttttactttggttaaatcg------cagttcactttgaaatctttgaggcctttatgttattctaggga 106  Q
    ||||||| | |||||||||||||||||||||||||||| |||||||||||      || ||  ||||||||||||||||||||||| ||||||  || ||    
T  9328675 aatatggatatagagatagttggtgtaaactttttactatggttaaatcgtgtttccatttacctttgaaatctttgaggcctttaggttatttgagtga 9328576  T
Q  107 tggaagtaaggttctgttg 125  Q
    |||||  |||||| |||||    
T  9328575 tggaaaaaaggttttgttg 9328557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 266
Target Start/End: Complemental strand, 9364596 - 9364466
Alignment:
Q  136 aggttttgttggaggtaaatcataggaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctat 235  Q
    ||||||| |||||  || ||| || ||||||||||||||| ||| | ||||||||| |  ||| |  ||||  ||||||||||||| || ||||||||||    
T  9364596 aggttttattggaaatagatcgtaagaagctgttttggtacgatctcaagagtgaaaacgttactagtgttccaggaattcctaatatgaatgaagctat 9364497  T
Q  236 gatttgtgttgaaagtcttctaccaccttct 266  Q
    |||||||||||  |||||| |||||||||||    
T  9364496 gatttgtgttggtagtcttgtaccaccttct 9364466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 127
Target Start/End: Complemental strand, 10335923 - 10335812
Alignment:
Q  10 aagaatatggttctagagatagttggtgtaaactttttactttggttaaatcgcagttcactttgaaatctttgaggcctttatgttattctagggatgg 109  Q
    |||||||||| | |||||||||||||||||||| |||||||||||||||||||        |||  | | ||||||||||||| |||||| ||| |||||    
T  10335923 aagaatatggctgtagagatagttggtgtaaacattttactttggttaaatcg------tgtttagattttttgaggcctttaggttattgtagtgatgg 10335830  T
Q  110 aagtaaggttctgttgga 127  Q
    |||||||||||| |||||    
T  10335829 aagtaaggttctattgga 10335812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 9274600 - 9274557
Alignment:
Q  10 aagaatatggttctagagatagttggtgtaaactttttactttg 53  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  9274600 aagaatatggttctacagatagttggtgtaaactttttactttg 9274557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 12012609 - 12012654
Alignment:
Q  10 aagaatatggttctagagatagttggtgtaaactttttactttggt 55  Q
    |||||||||||| || ||||||||||||||||||||||||||||||    
T  12012609 aagaatatggttgtaaagatagttggtgtaaactttttactttggt 12012654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 10353188 - 10353137
Alignment:
Q  10 aagaatatggttctagagatagttggtgtaaactttttactttggttaaatc 61  Q
    |||||||||| | |||||| ||||||||||||||||||||| ||||||||||    
T  10353188 aagaatatggatgtagagagagttggtgtaaactttttactgtggttaaatc 10353137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 12006181 - 12006224
Alignment:
Q  10 aagaatatggttctagagatagttggtgtaaactttttactttg 53  Q
    |||||||||||| || ||||||||||||||||||||||||||||    
T  12006181 aagaatatggttgtaaagatagttggtgtaaactttttactttg 12006224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 12018951 - 12018994
Alignment:
Q  10 aagaatatggttctagagatagttggtgtaaactttttactttg 53  Q
    |||||||||| | |||||||||||||||||||||||||||||||    
T  12018951 aagaatatggatgtagagatagttggtgtaaactttttactttg 12018994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 8579616 - 8579673
Alignment:
Q  70 ctttgaaatctttgaggcctttatgttattctagggatggaagtaaggttctgttgga 127  Q
    |||||| |||||||| |||||| ||||||||||| ||| ||||||| |||||||||||    
T  8579616 ctttgagatctttgaagcctttgtgttattctagtgatagaagtaaagttctgttgga 8579673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 127
Target Start/End: Complemental strand, 9316079 - 9315975
Alignment:
Q  29 tagttggtgtaaactttttactttggttaaatcgcagttcacttt------gaaatctttgaggcctttatgttattctagggatggaagtaaggttctg 122  Q
    |||||||||||||||||||||||||||||| ||    ||||||||      ||| | ||||| ||||||| |||||||||| || ||||||||||||||     
T  9316079 tagttggtgtaaactttttactttggttaattcatgtttcactttatctttgaattttttgaagcctttaggttattctagtgacggaagtaaggttcta 9315980  T
Q  123 ttgga 127  Q
    |||||    
T  9315979 ttgga 9315975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 7115708 - 7115753
Alignment:
Q  13 aatatggttctagagatagttggtgtaaactttttactttggttaa 58  Q
    ||||||| |||||||| || ||||||||||||||||| ||||||||    
T  7115708 aatatggatctagagacagctggtgtaaactttttacattggttaa 7115753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 11987550 - 11987586
Alignment:
Q  10 aagaatatggttctagagatagttggtgtaaactttt 46  Q
    |||||||||| | ||||||||||||||||||||||||    
T  11987550 aagaatatggatgtagagatagttggtgtaaactttt 11987586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 10 - 263
Target Start/End: Complemental strand, 37462568 - 37462306
Alignment:
Q  10 aagaatatggttctagagatagttggtgtaaactttttactttggttaaatcg-----cagttcac-tttgaaatctttgaggcctttatgttattctag 103  Q
    |||||||||| ||||||||||||||||||||||||| |||| ||| |||||||     || ||||| |||||||||||||||||||||||||||||||||    
T  37462568 aagaatatggatctagagatagttggtgtaaactttgtactgtggataaatcgtgtttcacttcacctttgaaatctttgaggcctttatgttattctag 37462469  T
Q  104 ggatggaagtaaggttctgttggacggaactcaggttttgttggaggtaaatcataggaagctgttttggtatgatttgaagagtgaacaaattagttat 203  Q
     ||||||||||||||| ||||||| || | ||||||||||||| ||||| |||| || ||||||||||||||||||| ||||||||||||| ||||||||    
T  37462468 tgatggaagtaaggttttgttggaaggcattcaggttttgttgaaggtagatcacagaaagctgttttggtatgattggaagagtgaacaagttagttat 37462369  T
Q  204 gttgaaggaattcctaatttggatgaa---gctatgatttgtgttgaaagtcttctaccacct 263  Q
     |||||||| ||||||||||| ||| |   |||||||||||||||||||||||| || |||||    
T  37462368 attgaaggagttcctaatttgaatggagctgctatgatttgtgttgaaagtcttgtatcacct 37462306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 39427645 - 39427596
Alignment:
Q  78 tctttgaggcctttatgttattctagggatggaagtaaggttctgttgga 127  Q
    ||||||| ||||||||||||||| || ||| ||||||| |||||||||||    
T  39427645 tctttgaagcctttatgttattccagtgatagaagtaaagttctgttgga 39427596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 26 - 265
Target Start/End: Complemental strand, 4534 - 4292
Alignment:
Q  26 agatagttggtgtaaactttttactttggttaaatcg-----cagttcac-tttgaaatctttgaggcctttatgttattctagggatggaagtaaggtt 119  Q
    ||||||||||||||||||||||||| || | ||||||     || ||||| ||||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  4534 agatagttggtgtaaactttttactatgatgaaatcgtgtgtcacttcacatttgaaatcttcgagtcctttatgttattctagtgatggaagtaaggtt 4435  T
Q  120 ctgttggacggaactcaggttttgttggaggtaaatcataggaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattccta 219  Q
    ||| | || |||| | ||||||||||||||||  |||||| |||||||||||||||||||||||||| ||||||| |||||||   ||||| |||||||     
T  4434 ctgattgaaggaattgaggttttgttggaggtgcatcataagaagctgttttggtatgatttgaagactgaacaagttagtta---tgaagaaattcctg 4338  T
Q  220 atttggatgaagctatgatttgtgttgaaagtcttctaccaccttc 265  Q
    ||||  ||| ||||| ||||||||||| ||||||| ||||||||||    
T  4337 atttcaatggagctaagatttgtgttggaagtcttgtaccaccttc 4292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 165 - 265
Target Start/End: Original strand, 41966911 - 41967011
Alignment:
Q  165 ctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctaccacctt 264  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||| ||||||||| ||||||| |||||||||    
T  41966911 ctgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattttgatgaagccatgttttgtgttggaagtcttgtaccacctt 41967010  T
Q  265 c 265  Q
    |    
T  41967011 c 41967011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 41966768 - 41966889
Alignment:
Q  10 aagaatatggttctagagatagttggtgtaaactttttactttggttaaatc-----gcagttca-ctttgaaatctttgaggcctttatgttattctag 103  Q
    |||||||| | ||||||||||| |||||||||||||||||||||||||||||      || |||| |||||||||| ||| ||  |||| ||| ||||||    
T  41966768 aagaatatcgatctagagatagctggtgtaaactttttactttggttaaatcttgtttcacttcatctttgaaatccttgggggttttaggttgttctag 41966867  T
Q  104 ggatggaagtaaggttctgttg 125  Q
     |||||||| ||||||||||||    
T  41966868 cgatggaaggaaggttctgttg 41966889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 161 - 265
Target Start/End: Original strand, 29453503 - 29453607
Alignment:
Q  161 gaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctacca 260  Q
    ||||||||||||||||||| | |||||||||||| |||||| ||||||||||||||||||||| ||| |||||||||||||||||| ||||||| | |||    
T  29453503 gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaagtcttgtgcca 29453602  T
Q  261 ccttc 265  Q
    |||||    
T  29453603 ccttc 29453607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 161 - 265
Target Start/End: Original strand, 29467979 - 29468083
Alignment:
Q  161 gaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctacca 260  Q
    |||| |||||||||||||| | |||||||||||  ||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||    
T  29467979 gaagttgttttggtatgatctcaagagtgaacatgttaattatgttgaaggaattcctaatttgaatgaagctatgatttgtgttggaagtcttgtacca 29468078  T
Q  261 ccttc 265  Q
    |||||    
T  29468079 ccttc 29468083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 29423208 - 29423104
Alignment:
Q  161 gaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctacca 260  Q
    ||||||||||||||||||| | |||||||||||| |||||| |||| |||||||||||||||| ||| |||| ||||||||||||| ||||||| || ||    
T  29423208 gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagccatgatttgtgttggaagtcttgtatca 29423109  T
Q  261 ccttc 265  Q
    |||||    
T  29423108 ccttc 29423104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 29467843 - 29467963
Alignment:
Q  10 aagaatatggttctagagatagttggtgtaaactttttactttggttaaatcgcagttcact------ttgaaatctttgaggcctttatgttattctag 103  Q
    |||||||||| | ||||||||||||| ||||||||||||||||||||| ||||   ||||||      ||| ||||||||||||||||| ||||||| ||    
T  29467843 aagaatatggatgtagagatagttggcgtaaactttttactttggttagatcgtgtttcactttacagttggaatctttgaggcctttaggttattcgag 29467942  T
Q  104 ggatggaagtaaggttctgtt 124  Q
     |||||||||| |||||||||    
T  29467943 cgatggaagtatggttctgtt 29467963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 161 - 266
Target Start/End: Original strand, 29443520 - 29443625
Alignment:
Q  161 gaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctacca 260  Q
    ||||||||||||||||||| | |||||||||    ||||||||||||||||||||||||   ||||| | || || |||||||||| ||||||| ||| |    
T  29443520 gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtacaa 29443619  T
Q  261 ccttct 266  Q
    ||||||    
T  29443620 ccttct 29443625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 29443384 - 29443505
Alignment:
Q  10 aagaatatggttctagagatagttggtgtaaactttttactttggttaaatcg-----cagttca-ctttgaaatctttgaggcctttatgttattctag 103  Q
    |||||||||| | ||||||||| |||||||||||||||||||||| | |||||     ||||| | |||||| | ||||||||  |||| ||||||| ||    
T  29443384 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgag 29443483  T
Q  104 ggatggaagtaaggttctgttg 125  Q
     ||| |||||| ||||||||||    
T  29443484 cgatagaagtatggttctgttg 29443505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 29423344 - 29423300
Alignment:
Q  10 aagaatatggttctagagatagttggtgtaaactttttactttgg 54  Q
    |||||||||| | ||||||||| ||||||||||||||||||||||    
T  29423344 aagaatatggatgtagagatagctggtgtaaactttttactttgg 29423300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 29453433 - 29453490
Alignment:
Q  70 ctttgaaatctttgaggcctttatgttattctagggatggaagtaaggttctgttgga 127  Q
    |||||||| ||||| ||||||||  |||||| || |||||||||| ||||||||||||    
T  29453433 ctttgaaaactttgtggcctttagcttattcgagcgatggaagtatggttctgttgga 29453490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 29453367 - 29453411
Alignment:
Q  10 aagaatatggttctagagatagttggtgtaaactttttactttgg 54  Q
    |||||||||| | ||||||||| |||||| |||||||||||||||    
T  29453367 aagaatatggatgtagagatagctggtgtgaactttttactttgg 29453411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 45243778 - 45243524
Alignment:
Q  10 aagaatatggttctagagatagttggtgtaaactttttactttggttaaatcgcagttca------ctttgaaatctttgaggcctttatgttattctag 103  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||   ||||       |||| ||||||||||||||||||||||||| ||    
T  45243778 aagaatatggttctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattcgag 45243679  T
Q  104 ggatggaagtaaggttctgttggacggaactcagg--------ttttgttggaggtaaatcataggaagctgttttggtatgatttgaagagtgaacaaa 195  Q
     ||| ||||||| ||||||||||    || ||| |        || | ||| | ||| ||| |||||||||||||||||||||| | || |||||||||     
T  45243678 tgatcgaagtaaagttctgttggtaacaaatcatgcaagttacttgtattgtatgtacatcctaggaagctgttttggtatgatctcaacagtgaacaac 45243579  T
Q  196 ttagttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaag 250  Q
    ||| ||||||| |||||||||||| |||  ||||||  |||||||||| ||||||    
T  45243578 ttacttatgttcaaggaattcctactttcaatgaagtaatgatttgtgctgaaag 45243524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 45230511 - 45230262
Alignment:
Q  10 aagaatatggttctagagatagttggtgtaaactttttactttggttaaatcgcagttca------ctttgaaatctttgaggcctttatgttattctag 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||       ||||  ||||||||| |||||||||||||| ||    
T  45230511 aagaatatggttctagagatagttggtgtaaactttttactttggttaaatcgtggttcaattttcatttggtatctttgagacctttatgttattcgag 45230412  T
Q  104 ggatggaagtaaggttctgttggacggaactcagg---ttttgttggaggtaaatcataggaagctgttttggtatgatttgaagagtgaacaaattagt 200  Q
     |||  | |||| || |||||||    || ||| |    ||  |||   ||||||| | |||||||||||||||||||||| |||||||||||| ||| |    
T  45230411 tgatcaacgtaaagtactgttggcaacaaatcatgcaagttacttgtttgtaaatccttggaagctgttttggtatgatttcaagagtgaacaagttact 45230312  T
Q  201 tatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaag 250  Q
     ||||| |||||||||||| |||  ||||||  |||||||||| ||||||    
T  45230311 catgttcaaggaattcctactttcaatgaagtaatgatttgtgctgaaag 45230262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 265
Target Start/End: Complemental strand, 45238029 - 45237765
Alignment:
Q  10 aagaatatggttctagagatagttggtgtaaactttttactttggttaaatcgcagttcacttt------gaaatctttgaggcctttatgttattctag 103  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||| |||||   |||| |||      |||||  |||||||||||||||||||| ||    
T  45238029 aagaatatggatctagagatagttggtgtaaactttttactttagttgaatcgtgtttcaattttcatctgaaattgttgaggcctttatgttattcaag 45237930  T
Q  104 ggatggaagtaaggttctgttggacggaactcaggt---tttgttggaggtaaatcataggaagctgttttggtatgatttgaagagtgaacaaattagt 200  Q
     ||| ||||||| ||||||||||    || ||| |    |    ||   | ||||| ||||||| |||||||||||||  | |||| ||||||| ||| |    
T  45237929 cgatcgaagtaaagttctgttggtaacaaatcatgcaactagcatgtctgcaaatcctaggaagttgttttggtatgacctcaagaatgaacaagttatt 45237830  T
Q  201 tatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctaccaccttc 265  Q
    ||||||  ||||||||||| |||| ||||||  |||||||||| |||||| ||| ||||||||||    
T  45237829 tatgttcgaggaattcctactttgaatgaagtaatgatttgtgctgaaagccttgtaccaccttc 45237765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 26574940 - 26574888
Alignment:
Q  10 aagaatatggttctagagatagttggtgtaaactttttactttggttaaatcg 62  Q
    |||||||||| | |||||||||||||||||||||||||||| |||||||||||    
T  26574940 aagaatatggatgtagagatagttggtgtaaactttttactgtggttaaatcg 26574888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 262
Target Start/End: Complemental strand, 26574797 - 26574700
Alignment:
Q  165 ctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctaccacc 262  Q
    |||||||||||||||||| ||||| | ||| ||||| || || ||| |  || | |||||||||| |||||||||||||||| ||||||| |||||||    
T  26574797 ctgttttggtatgatttggagagtaatcaagttagtcattttcaagaagatcttgatttggatgacgctatgatttgtgttggaagtcttgtaccacc 26574700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University