View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7548_low_4 (Length: 250)

Name: NF7548_low_4
Description: NF7548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7548_low_4
NF7548_low_4
[»] chr3 (10 HSPs)
chr3 (142-250)||(11494849-11494957)
chr3 (147-242)||(5968565-5968660)
chr3 (161-242)||(11488626-11488707)
chr3 (166-242)||(2922278-2922354)
chr3 (148-240)||(4133017-4133109)
chr3 (163-243)||(4057479-4057559)
chr3 (49-81)||(11494756-11494788)
chr3 (147-242)||(3872816-3872911)
chr3 (166-248)||(10187398-10187480)
chr3 (163-243)||(4077084-4077164)
[»] chr4 (1 HSPs)
chr4 (147-248)||(5991267-5991368)
[»] chr5 (1 HSPs)
chr5 (166-242)||(16449535-16449611)
[»] chr1 (1 HSPs)
chr1 (166-242)||(17314507-17314583)
[»] scaffold0603 (1 HSPs)
scaffold0603 (147-242)||(2097-2192)
[»] chr8 (1 HSPs)
chr8 (173-240)||(18390803-18390870)


Alignment Details
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 11494849 - 11494957
Alignment:
Q  142 cttatagactcacccggacaagatactcatgtgatcaattcgtcatcgataattatggagggaatatgagcaatcttacgccactctttccctcgcttcc 241  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11494849 cttagagactcacccggacaagatactcatgtgatcaattcgtcatcgataattatggagggaatatgagcaatcttacgccattctttccctcgcttcc 11494948  T
Q  242 tttgcaatt 250  Q
    |||||||||    
T  11494949 tttgcaatt 11494957  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 5968660 - 5968565
Alignment:
Q  147 agactcacccggacaagatactcatgtgatcaattcgtcatcgataattatggagggaatatgagcaatcttacgccactctttccctcgcttcct 242  Q
    ||||||||||| ||| || | ||||||||| | ||| || | ||||||||| || ||||| ||||||||||||||||||||||||||| |||||||    
T  5968660 agactcacccgaacatgaaaatcatgtgattatttcatcgttgataattatagacggaatgtgagcaatcttacgccactctttcccttgcttcct 5968565  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 11488626 - 11488707
Alignment:
Q  161 aagatactcatgtgatcaattcgtcatcgataattatggagggaatatgagcaatcttacgccactctttccctcgcttcct 242  Q
    |||| ||||||||||||||||| ||||| |||||||||   || || ||||||||||||| ||||||||||||| |||||||    
T  11488626 aagaaactcatgtgatcaattcatcatcaataattatgacaggtatgtgagcaatcttactccactctttcccttgcttcct 11488707  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 2922354 - 2922278
Alignment:
Q  166 actcatgtgatcaattcgtcatcgataattatggagggaatatgagcaatcttacgccactctttccctcgcttcct 242  Q
    ||||||||||||| |||| ||||||||| ||||||| |||  |||||||| |||||||||| ||||||| |||||||    
T  2922354 actcatgtgatcagttcgccatcgataactatggagagaacgtgagcaatgttacgccactttttcccttgcttcct 2922278  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 240
Target Start/End: Complemental strand, 4133109 - 4133017
Alignment:
Q  148 gactcacccggacaagatactcatgtgatcaattcgtcatcgataattatggagggaatatgagcaatcttacgccactctttccctcgcttc 240  Q
    ||||||||  |||| |||||||||||||||| ||   ||| ||||| ||  || ||||| |||||||||||||||||||||||||||||||||    
T  4133109 gactcacctcgacatgatactcatgtgatcatttgtccattgataagtaccgatggaatgtgagcaatcttacgccactctttccctcgcttc 4133017  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 4057479 - 4057559
Alignment:
Q  163 gatactcatgtgatcaattcgtcatcgataattatggagggaatatgagcaatcttacgccactctttccctcgcttcctt 243  Q
    ||||||||||| || | || ||| |||| || |||| ||||||| |||| ||||||||||||||||||||| |||||||||    
T  4057479 gatactcatgttatgattttgtcgtcgacaaatatgaagggaatgtgagaaatcttacgccactctttcccacgcttcctt 4057559  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 11494756 - 11494788
Alignment:
Q  49 gttaatgctataatatagtatttcgatgttact 81  Q
    |||||||||||||||||||||||||||||||||    
T  11494756 gttaatgctataatatagtatttcgatgttact 11494788  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 3872911 - 3872816
Alignment:
Q  147 agactcacccggacaagatactcatgtgatcaattcgtcatcgataattatggagggaatatgagcaatcttacgccactctttccctcgcttcct 242  Q
    |||||||||  |||| || ||| ||||||||| ||||||||| ||||||||||  || |  |||||||| |||| |||||  ||||||||||||||    
T  3872911 agactcacctagacatgaaacttatgtgatcagttcgtcatcaataattatggcaggcacgtgagcaattttacaccacttcttccctcgcttcct 3872816  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 248
Target Start/End: Complemental strand, 10187480 - 10187398
Alignment:
Q  166 actcatgtgatcaattcgtcatcgataattatggagggaatatgagcaatcttacgccactctttccctcgcttcctttgcaa 248  Q
    ||||||||||| |||| |||||| ||||||||||  || || |||  ||||||| |||||||||||||| |||| || |||||    
T  10187480 actcatgtgattaatttgtcatcaataattatggcaggtatgtgaagaatcttatgccactctttcccttgcttgctctgcaa 10187398  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 4077084 - 4077164
Alignment:
Q  163 gatactcatgtgatcaattcgtcatcgataattatggagggaatatgagcaatcttacgccactctttccctcgcttcctt 243  Q
    ||||||||||| || | |||||  | ||||| |||| ||||||| |||| ||||||| ||||||||||||| ||| |||||    
T  4077084 gatactcatgtcatgatttcgttgttgataaatatgaagggaatgtgagaaatcttatgccactctttcccacgcgtcctt 4077164  T

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Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 147 - 248
Target Start/End: Complemental strand, 5991368 - 5991267
Alignment:
Q  147 agactcacccggacaagatactcatgtgatcaattcgtcatcgataattatggagggaatatgagcaatcttacgccactctttccctcgcttcctttgc 246  Q
    |||||||||  |||| || ||| ||||||||||||| |||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||| |||    
T  5991368 agactcacctagacaggaaacttatgtgatcaattcatcatcgataactatggcaggaatatgagcaatcttacgccactctttccctcgcttcctctgc 5991269  T
Q  247 aa 248  Q
    ||    
T  5991268 aa 5991267  T

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Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 16449611 - 16449535
Alignment:
Q  166 actcatgtgatcaattcgtcatcgataattatggagggaatatgagcaatcttacgccactctttccctcgcttcct 242  Q
    ||||| ||||| | ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16449611 actcaggtgataagttcatcatcgataactatggagggaatatgagcaatcttacgccactctttccctcgcttcct 16449535  T

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Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 17314583 - 17314507
Alignment:
Q  166 actcatgtgatcaattcgtcatcgataattatggagggaatatgagcaatcttacgccactctttccctcgcttcct 242  Q
    |||||||||||||| |  ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  17314583 actcatgtgatcaaattatcatcgataattatggagggaatgtgagcaatcttacgccactcttttcctcgcttcct 17314507  T

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Target: scaffold0603 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 2097 - 2192
Alignment:
Q  147 agactcacccggacaagatactcatgtgatcaattcgtcatcgataattatggagggaatatgagcaatcttacgccactctttccctcgcttcct 242  Q
    ||||||||||| | | || |||||||| |||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||| |||||||    
T  2097 agactcacccgaataggaaactcatgttatcaattcatcatctataattatggagggaatgtgggcaatcttacgccactctttcccttgcttcct 2192  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 18390870 - 18390803
Alignment:
Q  173 tgatcaattcgtcatcgataattatggagggaatatgagcaatcttacgccactctttccctcgcttc 240  Q
    ||||||||||||| | |||||||||| ||||||| |||| ||||||| ||||||||||||||||||||    
T  18390870 tgatcaattcgtcgttgataattatgaagggaatgtgagaaatcttatgccactctttccctcgcttc 18390803  T

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