View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7549_low_1 (Length: 390)

Name: NF7549_low_1
Description: NF7549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7549_low_1
NF7549_low_1
[»] chr8 (3 HSPs)
chr8 (1-311)||(1889877-1890186)
chr8 (1-117)||(1666241-1666357)
chr8 (315-372)||(36104391-36104449)
[»] chr2 (2 HSPs)
chr2 (11-98)||(5999475-5999562)
chr2 (315-372)||(42444272-42444330)
[»] chr4 (4 HSPs)
chr4 (317-374)||(48583932-48583989)
chr4 (316-374)||(14526066-14526124)
chr4 (325-375)||(2358812-2358863)
chr4 (316-352)||(6019844-6019880)
[»] chr5 (2 HSPs)
chr5 (316-353)||(41312898-41312935)
chr5 (325-368)||(21031959-21032002)
[»] scaffold0471 (1 HSPs)
scaffold0471 (315-372)||(2506-2564)


Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 1889877 - 1890186
Alignment:
Q  1 tatagttggtagggatagaaggaaaaggttctcaattttgttgttagaaatttgagatggatattaatctgtagtgattatgtggaacatacttgcatat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1889877 tatagttggtagggatagaaggaaaaggttctcaattttgttgttataaatttgagatggatattaatctgtagtgattatgtggaacatacttgcatat 1889976  T
Q  101 gcaggtgagttatctatcggattttctttttcttcagaatatttaggtacttctctgaaaggagacgnnnnnnncaaaagatagaattgtctctgaaagg 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||        |||||||||||||||||||||||||    
T  1889977 gcaggtgagttatctatcggattttctttttcttcagaatttttaagtacttctctgaaaggtgacgttttttt-aaaagatagaattgtctctgaaagg 1890075  T
Q  201 atccattgaaaggagacgttaagcttgtccgagaagagagtcagattctaagttttgttttcgcctgcgacttgatcatgacagtaactaataaaatctc 300  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1890076 atccattgaaaggagacgttaagcttgtccaagaagagagtcacattctaagttttgttttcgcctgcgacttcatcatgacagtaactaataaaatctc 1890175  T
Q  301 agatgtttatt 311  Q
    | |||||||||    
T  1890176 atatgtttatt 1890186  T

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Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 1666357 - 1666241
Alignment:
Q  1 tatagttggtagggatagaaggaaaaggttctcaattttgttgttagaaatttgagatggatattaatctgtagtgattatgtggaacatacttgcatat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1666357 tatagttggtagggatagaaggaaaaggttctcaattttgttgttagaaattagagatggatattaatctgtagtgattatgtggaacatacttgcatat 1666258  T
Q  101 gcaggtgagttatctat 117  Q
    |||||||||||||||||    
T  1666257 gcaggtgagttatctat 1666241  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 372
Target Start/End: Original strand, 36104391 - 36104449
Alignment:
Q  315 tgagcgctgctatacaacacgacaaactcaacacacg-aaagccacacgacatgttgaa 372  Q
    |||||||||||||||| ||||||| |||| ||||||| |||||| ||||||||||||||    
T  36104391 tgagcgctgctatacagcacgacagactctacacacgaaaagccgcacgacatgttgaa 36104449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 5999475 - 5999562
Alignment:
Q  11 agggatagaaggaaaaggttctcaattttgttgttagaaatttgagatggatattaatctgtagtgattatgtggaacatacttgcat 98  Q
    |||||| |||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5999475 agggatggaaggaaaagtttctcaattttgttgtccgaaatttgagatggatattaatctgtagtgattatgttgaacatacttgcat 5999562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 372
Target Start/End: Complemental strand, 42444330 - 42444272
Alignment:
Q  315 tgagcgctgctatacaacacgacaaactcaacacacg-aaagccacacgacatgttgaa 372  Q
    |||||||||||||||| ||||||| |||| ||||||| |||||| ||||||||||||||    
T  42444330 tgagcgctgctatacagcacgacagactctacacacgaaaagccgcacgacatgttgaa 42444272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 48583989 - 48583932
Alignment:
Q  317 agcgctgctatacaacacgacaaactcaacacacgaaagccacacgacatgttgaaca 374  Q
    |||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||    
T  48583989 agcgctgctatacagcacgacaaaatcaacacacgaaagccacacaacatgttgaaca 48583932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 374
Target Start/End: Complemental strand, 14526124 - 14526066
Alignment:
Q  316 gagcgctgctatacaacacgacaaactcaacacacgaaagccacacgacatgttgaaca 374  Q
    |||||||| |||||| ||||||||| ||||||||||||| |||||||||||||| ||||    
T  14526124 gagcgctgttatacagcacgacaaattcaacacacgaaaaccacacgacatgttcaaca 14526066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 375
Target Start/End: Original strand, 2358812 - 2358863
Alignment:
Q  325 tatacaacacgacaaactc-aacacacgaaagccacacgacatgttgaacat 375  Q
    ||||||||||||||||||| |||||||||||||| || ||||||||||||||    
T  2358812 tatacaacacgacaaactctaacacacgaaagccgcaggacatgttgaacat 2358863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 6019844 - 6019880
Alignment:
Q  316 gagcgctgctatacaacacgacaaactcaacacacga 352  Q
    ||||||||||||||||||||||||  |||||||||||    
T  6019844 gagcgctgctatacaacacgacaagatcaacacacga 6019880  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 41312898 - 41312935
Alignment:
Q  316 gagcgctgctatacaacacgacaaactcaacacacgaa 353  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41312898 gagcgctgctatacaacacgacaaactcaacacacgaa 41312935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 368
Target Start/End: Complemental strand, 21032002 - 21031959
Alignment:
Q  325 tatacaacacgacaaactcaacacacgaaagccacacgacatgt 368  Q
    ||||||||||||  |||| |||||||||||||||||||||||||    
T  21032002 tatacaacacgaacaacttaacacacgaaagccacacgacatgt 21031959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 372
Target Start/End: Original strand, 2506 - 2564
Alignment:
Q  315 tgagcgctgctatacaacacgacaaactcaacacacg-aaagccacacgacatgttgaa 372  Q
    |||||||||||||||| ||||||| |||| ||||||| |||||| ||||||||||||||    
T  2506 tgagcgctgctatacagcacgacagactctacacacgaaaagccgcacgacatgttgaa 2564  T

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