View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7549_low_3 (Length: 296)
Name: NF7549_low_3
Description: NF7549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7549_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 36774930 - 36774716
Alignment:
| Q |
16 |
atagtaatcaacagtagaggtatagaacactcggggttggaaaaaagggttaggatggttataattaaattataatgcaaagtgttagaggaatggttgt |
115 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
36774930 |
atagtattcaacagtagaggtatagaacactaggggttggaaaaaagggttaggatggttataa----attataatgcaaagtgttagaggaatggttgt |
36774835 |
T |
|
| Q |
116 |
ggttgattgatggtagtgaaagtagaagaaatgaggagtatttataaggtgccaaaaagctacttgacctgtatcaagat-cccactatggttttattga |
214 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36774834 |
ggttgattgaaggtagtgaaagtagaagaaatgaggagtatttataaggtgccaaaaagctacttgacctgtatcaagatccccactatggttttattgg |
36774735 |
T |
|
| Q |
215 |
tttctagtctgctattttt |
233 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
36774734 |
tttctagtctgctagtttt |
36774716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 36795981 - 36795919
Alignment:
| Q |
98 |
tgttagaggaatggttgtggttgattgatggtagtgaaagtagaagaaatgaggagtatttat |
160 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
36795981 |
tgttagaggaatggttgtgtttgattgatggtagtgaaagtaggagaaatgaggattatttat |
36795919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 36759629 - 36759556
Alignment:
| Q |
107 |
aatggttgtggttgattgatggtagtgaaagtagaagaaatgaggagtatttataaggtgccaaaaagctactt |
180 |
Q |
| |
|
||||||||| |||||| |||||||||||||| | |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36759629 |
aatggttgtagttgatggatggtagtgaaagagggagaagtgaggagtatttataaggtgccaaaaagctactt |
36759556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 36787644 - 36787594
Alignment:
| Q |
147 |
tgaggagtatttataaggtgccaaaaagctacttgacctgtatcaagatccc |
198 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||| ||| ||||||||||||||| |
|
|
| T |
36787644 |
tgaggattatttataaggtgcc-aaaagctacctgatctgtatcaagatccc |
36787594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 129
Target Start/End: Complemental strand, 36787673 - 36787645
Alignment:
| Q |
101 |
tagaggaatggttgtggttgattgatggt |
129 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
36787673 |
tagaggaatggttgtggttgattgatggt |
36787645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University