View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_high_11 (Length: 581)
Name: NF7550_high_11
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 3 - 563
Target Start/End: Original strand, 17209210 - 17209770
Alignment:
| Q |
3 |
ttctaaacctatgtcatacacaaaatttgttgagataactcttcaacttctgtgatggatcctttttataaaacataagttggatatattccctcaatgc |
102 |
Q |
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| T |
17209210 |
ttctaaacctatgtcatacacaaaatttgttgagataactcttcaacttctgtgatgcatcctttttataaaacacaagt-ggatatattccctcaatgc |
17209308 |
T |
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| Q |
103 |
aaataaccttttaatcatcattgtacgacacgagtcgtatttaagcaacatatatgaattggtcnnnnnnntaataatataagtaacatataagaaattt |
202 |
Q |
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| T |
17209309 |
aaataac-ttttaatcatcattgtacgacacgagtcgtatttaagcaacatatatgaattagtcaaaa----aaaaatataaggaacatataagaaattt |
17209403 |
T |
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| Q |
203 |
gatcaccgaagtcacgtatttttatatctttatcaattcaccaagtcatgtatagatgcacagttttgacttgttcattgtgtgtggttctagatcaata |
302 |
Q |
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| T |
17209404 |
gatcaccgaagtcacgtatttttatatttttatcaattcaccaagtcatgtatagatgcacagttttgacttgttcattgtgtgtggttctagatcaatt |
17209503 |
T |
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| Q |
303 |
tagtttttnnnnnnnnnnnnnnntaa------gattcaatgaatatgtctgatttaatttgatgatgatagtgcacacgtgattggtcaatgcattttca |
396 |
Q |
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| T |
17209504 |
tagtttttttttttgttttaaaaaaaaatcaagattcaatgaatatgtctgatttaatttgatgatgatagtgcacacgtgattggtcaatgcattttca |
17209603 |
T |
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| Q |
397 |
taaaattataattttaaacattacttaatgagttccctgnnnnnnncattacttaatgagcttaaaggttacacatgtggaaaatacaaccgtaagatcc |
496 |
Q |
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| T |
17209604 |
taaaattataattttaaacattacttaattagttccctgaaaaaaacattacttaatgagcttaaaggttacacatgtggaaaatacaaccgtaagatcc |
17209703 |
T |
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| Q |
497 |
ttagtaacaacccataagaggggaaatcgacacttagctataaatattctagtgtgcgggtggatag |
563 |
Q |
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| T |
17209704 |
ttagtaacaacccataagagggaaaatcgacacttagctataaatattgtagtgtgcgggtggatag |
17209770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 17211836 - 17211876
Alignment:
| Q |
261 |
cacagttttgacttgttcattgtgtgtggttctagatcaat |
301 |
Q |
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| T |
17211836 |
cacaattttgacttcttcattgtgtgtggttttagatcaat |
17211876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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