View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7550_high_12 (Length: 536)
Name: NF7550_high_12
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_high_12 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 14 - 417
Target Start/End: Complemental strand, 7222980 - 7222577
Alignment:
| Q |
14 |
atattgcgctagattttcacttcattcgtgaccaggttgattccggtactctcaaaattggccacgtatcatccgttgatcagctagccgatatattcac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7222980 |
atattgcgctagattttcacttcattcgtgaccaggttgattccggtactctgaaaattggtcacgtatcatccgttgatcagctagccgatatattcac |
7222881 |
T |
|
| Q |
114 |
caaaccactttccaaagatagagtttcttttcttcgttccaagcttcgagttcttcagaatcatcagcttgctggggggtaataagtagttagtaattag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7222880 |
caaaccactttccaaagatagagtttcttttcttcgttccaagcttcgagttcttcagaatcatcagcttgctggggggtaataagtagttagtaattag |
7222781 |
T |
|
| Q |
214 |
tttcctacttccctgccaagtaacgttagtggaataggtcattaattagtttcctactttcctgccagtaacgttagtggaataggttggtagttccact |
313 |
Q |
| |
|
|||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7222780 |
tttcctactttcctgccaagtcacattagtggaataggtcattaattagtttcctactttcctgccagtaacgttagtggaataggttggtagttccact |
7222681 |
T |
|
| Q |
314 |
ccttattattagcattcagtttctcaattctttgctgtatatattcgtgtaattgtttaccacattgatcaatgaattatcaatttaagtccattctcta |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7222680 |
ccttattattagcattcagtttctcaattctttgctgtatatattcgtgtaattgtttaccacattaatcaatgaattatcaatttaagtccattctcta |
7222581 |
T |
|
| Q |
414 |
taaa |
417 |
Q |
| |
|
|||| |
|
|
| T |
7222580 |
taaa |
7222577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 193 - 415
Target Start/End: Complemental strand, 7227222 - 7227000
Alignment:
| Q |
193 |
taataagtagttagtaattagtttcctacttccctgccaagtaacgttagtggaataggtcattaattagtttcctactttcctgccagtaacgttagtg |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7227222 |
taataagtagttagtaattagtttcctactttcctgccaagtcacattagtggaataggtcattaattagtttcctactttcctgccagtaacgttagtg |
7227123 |
T |
|
| Q |
293 |
gaataggttggtagttccactccttattattagcattcagtttctcaattctttgctgtatatattcgtgtaattgtttaccacattgatcaatgaatta |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
7227122 |
gaataggttggtagttccactccttattattagcattcagtttctcaattctttgctgtatatattcgtgtaattgtttaccacattaatcaatgaatta |
7227023 |
T |
|
| Q |
393 |
tcaatttaagtccattctctata |
415 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
7227022 |
tcaatttaagtccattctctata |
7227000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 193 - 416
Target Start/End: Complemental strand, 14788789 - 14788566
Alignment:
| Q |
193 |
taataagtagttagtaattagtttcctacttccctgccaagtaacgttagtggaataggtcattaattagtttcctactttcctgccagtaacgttagtg |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14788789 |
taataagtagttagtaattagtttcctacttttctgccaagtaacattagtggaataggtcagtaattagtttcctactttcatgccagtaacgttagtg |
14788690 |
T |
|
| Q |
293 |
gaataggttggtagttccactccttattattagcattcagtttctcaattctttgctgtatatattcgtgtaattgtttaccacattgatcaatgaatta |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| || |||||| |
|
|
| T |
14788689 |
gaataggttggtagttccactccttattattagcattcagtttctcaattctttgttgtatatattcatgtaattgtttaccacattgattaaggaatta |
14788590 |
T |
|
| Q |
393 |
tcaatttaagtccattctctataa |
416 |
Q |
| |
|
||||||||| ||||||||| |||| |
|
|
| T |
14788589 |
tcaatttaaatccattctccataa |
14788566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 14 - 415
Target Start/End: Complemental strand, 27721916 - 27721516
Alignment:
| Q |
14 |
atattgcgctagattttcacttcattcgtgaccaggttgattccggtactctcaaaattggccacgtatcatccgttgatcagctagccgatatattcac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27721916 |
atattgcgctagattttcacttcattcgtgaccaggttgattccggtactctcaaaattggccacgtatcatccgttgatcagctagccgatatattcac |
27721817 |
T |
|
| Q |
114 |
caaaccactttccaaagatagagtttcttttcttcgttccaagcttcgagttcttcagaatcatcagcttgctggggggtaataagtagttagtaattag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27721816 |
caaaccactttccaaagatagagtttcttttcttcgttccaagcttcgagttcttccgaatcatcagcttgctggggggtaataagtagttagtaattag |
27721717 |
T |
|
| Q |
214 |
tttcctacttccctgccaagtaacgttagtggaataggtcattaattagtttcctactttcctgccagtaacgttagtggaataggttggtagttccact |
313 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27721716 |
tttcctactttcctgccaagtaacattagtggaataggtcagtaattagtttcctactttcatgccagtaacgttagtggaataggttggtagttccact |
27721617 |
T |
|
| Q |
314 |
ccttattattagcattcagtttctcaattctttgctgtatatattcgtgtaattgtttaccacattgatcaatgaattatcaatttaagtccattctcta |
413 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||| || ||||||||||||||| | ||||||||| |
|
|
| T |
27721616 |
ccttattattag-attcagtttctcaattttttgctgtatatattcatgtaattgtttaccacattgattaaggaattatcaatttaaattcattctcta |
27721518 |
T |
|
| Q |
414 |
ta |
415 |
Q |
| |
|
|| |
|
|
| T |
27721517 |
ta |
27721516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 193 - 415
Target Start/End: Complemental strand, 27726157 - 27725935
Alignment:
| Q |
193 |
taataagtagttagtaattagtttcctacttccctgccaagtaacgttagtggaataggtcattaattagtttcctactttcctgccagtaacgttagtg |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27726157 |
taataagtagttagtaattagtttcctactttcctgccaagtaacattagtggaataggtcagtaattagtttcctactttcatgccagtaacgttagtg |
27726058 |
T |
|
| Q |
293 |
gaataggttggtagttccactccttattattagcattcagtttctcaattctttgctgtatatattcgtgtaattgtttaccacattgatcaatgaatta |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| || |||||| |
|
|
| T |
27726057 |
gaataggttggtagttccactccttattattagcattcagtttctcaattctttgcggtatatattcatgtaattgtttaccacattgattaaggaatta |
27725958 |
T |
|
| Q |
393 |
tcaatttaagtccattctctata |
415 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
27725957 |
tcaatttaaatccattctctata |
27725935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 42606043 - 42605806
Alignment:
| Q |
14 |
atattgcgctagattttcacttcattcgtgaccaggttgattccggtactctcaaaattggccacgtatcatccgttgatcagctagccgatatattcac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
42606043 |
atattgcgctagattttcacttcattcgtgaccaggttgattccggtactctcaaaattggccacgtatcctccgttgatcagctagctgatatattcac |
42605944 |
T |
|
| Q |
114 |
caaaccactttccaaagatagagtttcttttcttcgttccaagcttcgagttcttcagaatcatcagcttgctggggggtaataagtagttagtaattag |
213 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42605943 |
caaaccactttccaaagatagagttttttttcttcgttccaagcttcgagttcttcccaatcatcagcttgctggggggtaataagtagtcagtaattag |
42605844 |
T |
|
| Q |
214 |
tttcctacttccctgccaagtaacgttagtggaataggt |
252 |
Q |
| |
|
|||||||||| | |||| ||||||||||||||||||||| |
|
|
| T |
42605843 |
tttcctactttcatgcc-agtaacgttagtggaataggt |
42605806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 251 - 415
Target Start/End: Complemental strand, 42605855 - 42605691
Alignment:
| Q |
251 |
gtcattaattagtttcctactttcctgccagtaacgttagtggaataggttggtagttccactccttattattagcattcagtttctcaattctttgctg |
350 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42605855 |
gtcagtaattagtttcctactttcatgccagtaacgttagtggaataggttggtagttccactccttattattagcattcagtttctcaattctttgctg |
42605756 |
T |
|
| Q |
351 |
tatatattcgtgtaattgtttaccacattgatcaatgaattatcaatttaagtccattctctata |
415 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
42605755 |
tatatattcatgtaattgtttaccacattgatcaaggaattatcaatttaaatccattctctata |
42605691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 514
Target Start/End: Complemental strand, 12109325 - 12109282
Alignment:
| Q |
471 |
gggcattaagacgctttttgcgttaagaaactaaataatggttt |
514 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
12109325 |
gggcattaggacgcattttgcgttaagaaactaagtaatggttt |
12109282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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