View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_high_13 (Length: 531)
Name: NF7550_high_13
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 5e-91; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 38531171 - 38530969
Alignment:
| Q |
7 |
gcaattgagatagcttcaaaaaagggtttgacctctctttggttgaaaatataatcttaattggttactcttgctttctaaaatcatgatttgactcttt |
106 |
Q |
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| T |
38531171 |
gcaattgggatagcttcaaaaaagggtttgacctctctttggttgaaaatatactcttaattggttactcttgctttctaaaatcatgatttgactct-- |
38531074 |
T |
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| Q |
107 |
ggaggtcaaaaaacaagtggttgaattgtgttgatttaactaaaaatacgtgattcactatatctcatatcttcggaaaatacaaccgttgtgcagaaaa |
206 |
Q |
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| T |
38531073 |
gaaggtcaaaaaacaagtggttgaattgtgctgatttaactaaaaatacgtgattcattatatctcatatcttcagaaaatacaaccgttgtgcagaaaa |
38530974 |
T |
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| Q |
207 |
gactg |
211 |
Q |
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||||| |
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| T |
38530973 |
gactg |
38530969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 331 - 409
Target Start/End: Complemental strand, 38530799 - 38530721
Alignment:
| Q |
331 |
ccatgaatgtttactttagattttagtctagtaacccaaaggttgtaatttctattcttttttaattaatcaattttac |
409 |
Q |
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| T |
38530799 |
ccatgaatgtttactttagattttagtctagtaacccaaaggttgtaatttctattcttttttaattaataaattttac |
38530721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 477 - 510
Target Start/End: Complemental strand, 38530656 - 38530623
Alignment:
| Q |
477 |
cattttaaaaccgaagcccattccaattaatttt |
510 |
Q |
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| T |
38530656 |
cattttaaaaccgaagcccattccaattaatttt |
38530623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 179
Target Start/End: Original strand, 43458634 - 43458789
Alignment:
| Q |
24 |
aaaaaagggtttgacctctctttggttgaaaatataatcttaattggttactcttgctttctaaaatcatgatttgactctttggaggtcaaaaaacaag |
123 |
Q |
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| T |
43458634 |
aaaaaagggttggatttctctttggttggaaacatactctcaattggttactcttactttaaagaatcattgtatggttccttggaggttaagaaaccgg |
43458733 |
T |
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| Q |
124 |
tggttgaattgtgttgatttaactaaaaatacgtgattcactatatctcatatctt |
179 |
Q |
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| T |
43458734 |
tggttgaactgtgttgagttaactaagaatattagattcattatttctcatatctt |
43458789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 4605438 - 4605529
Alignment:
| Q |
115 |
aaaaacaagtggttgaattgtgttgatttaactaaaaatacgtgattcactatatctcatatcttcggaaaatacaaccgttgtgcagaaaa |
206 |
Q |
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| T |
4605438 |
aaaaacaagtggtttatctgtgttgaattaactaaaaatatgtgattcattatttctcatatcttcataaaagacaattgttgtgcacaaaa |
4605529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 4605364 - 4605415
Alignment:
| Q |
24 |
aaaaaagggtttgacctctctttggttgaaaatataatcttaattggttact |
75 |
Q |
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| T |
4605364 |
aaaaaagggtttgacctctctttggttggaaaaagactctcaattggttact |
4605415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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