View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7550_high_15 (Length: 513)
Name: NF7550_high_15
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 20 - 499
Target Start/End: Original strand, 40773287 - 40773762
Alignment:
| Q |
20 |
atcagtaatgcagaaagtagtatctactataggatcagaacaaactgctgccacaaaatattgtagaagtgaaaaatacaaattaagtgtgcatgattag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40773287 |
atcagtaatgcagaaagtagtatctactataggatcagaacaaactgctgccacaaaat---gtagaagtgaaaaatacaaattaagtgtgcatgattag |
40773383 |
T |
|
| Q |
120 |
ttaatgatccccacaaaggaggaattcccctgacgagtaacgatctttatagtaacatcttcaaggggattgattttgctatccaaaaaggataagtggt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
40773384 |
ttaatgatccccacaaaggaggaattcccctaacgagtaacgatctttatagtaacatcttcaaggggattggttttgctatctaaaaaggataagtggt |
40773483 |
T |
|
| Q |
220 |
gcaacttattttccgtttgccctacattcctgcgtaattttccagtttatagcctaactagcccaaatattcgactagcgagagtgtaattataattcaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40773484 |
gcaacttattttccgtttgccctacattcctgcgtaattttccagtttatagcctaactagcccaaatattcgactagcgagagtgtaattataattcaa |
40773583 |
T |
|
| Q |
320 |
taatagctatagagtagagcttaattaattcaacaaacaaaatatctgtagagtagagtagagtaggtagtttttctcattt---gnnnnnnnnnnnnnn |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| | || |
|
|
| T |
40773584 |
taatagctatagagtagagcttaattaattcaacaaacaaaa-atagtta---tagagtagagtaggtagtttttctaaattaaaaaaaaaaaaaaaaaa |
40773679 |
T |
|
| Q |
417 |
gagtaggtattttttatgaaaggaatagagtaaaatagacaatgggatttagatttagtgcaatttgttcgcatgcattcatc |
499 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40773680 |
gagtaggtagtttttatgaaaggaatagagtaaattagacaatgggatttagatttagtgcaatttgttcgcatgcattcatc |
40773762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University