View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7550_high_16 (Length: 495)
Name: NF7550_high_16
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 16 - 476
Target Start/End: Complemental strand, 26210286 - 26209826
Alignment:
| Q |
16 |
atcggaagcgtagttcagatgctactgcaagaagctcgacatcatcatcctctggtgctagttcaacccttaaaagggttgaacaaaaccataatacgga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26210286 |
atcggaagcgtagttcagatgctactgcaagaagctcgacatcatcatcctctggtgctagttcaacccttaaaagggttgaacaaaaccataatacaga |
26210187 |
T |
|
| Q |
116 |
tgatgatgtcaagcttcaaatagaatcagcgcgaaattctttacaacttgctagaataagcactattcgcacgcgcgacaacgagagcaacaagtccgta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
26210186 |
tgatgatgtcaagcttcaaatagaatcagcgcgaaattctttacaacttgctagaataagcactattcgcacgcgcgacaacaagagcaacaagtccata |
26210087 |
T |
|
| Q |
216 |
accaaagacttttctcccttgaaacttaccggaaacttgcttgtgaataacactccaagaagaaagagtgttgacagcttacctaagcatttagagttaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
26210086 |
accaaagacttttctcccttgaaactcactggaaacttgcttgtgaataacactccaagaagaaagagtgttgatagtttacctaagcatttagagttaa |
26209987 |
T |
|
| Q |
316 |
actcagtttcaagtttttacaatggtaatattaatggaagaaaagtggttatggggaatattatgaggaagaatagtaacgaacttgcacagtttctaag |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26209986 |
actcagtttcaagtttttacaatggtaataataatggaaggaaagtggttatggggaatattatgaggaagaatagtaatgaacttgcacagtttctaag |
26209887 |
T |
|
| Q |
416 |
tcaaaggcacaatattgcagaccctgaagtgttgaaatctatgggaaatgaagcatacaaa |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26209886 |
tcaaaggcacaatattgcagaccctgaagtgttgaaatcaatgggaaatgaagcatacaaa |
26209826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 434 - 476
Target Start/End: Complemental strand, 33531930 - 33531888
Alignment:
| Q |
434 |
agaccctgaagtgttgaaatctatgggaaatgaagcatacaaa |
476 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
33531930 |
agaccctgaggtgttgaaatcaatgggaaatgaagcatacaaa |
33531888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University