View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_high_19 (Length: 490)
Name: NF7550_high_19
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 13 - 473
Target Start/End: Original strand, 49963038 - 49963498
Alignment:
| Q |
13 |
aatatcatggtccaaaaacaaaatctctatgcaaatggaaactgccactgaaaaatcaaaacaactatacagctacaatttgatcacgttagaagcaact |
112 |
Q |
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| T |
49963038 |
aatatcatggtccaaaaacaaaatctctatgcaaatggaaactgccactgaaaaatcaaaacaactatacagctacaatttgatcacgttagaagcaact |
49963137 |
T |
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| Q |
113 |
cgtctccccatgatctcaattactctttgtggtaagcacagtacgtatagttcagagatgaatgaataattaactatagctagctagtaacatccatttt |
212 |
Q |
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| || ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
49963138 |
catccccccatgatttcaattactctttgtggcaagcacagtacgtatagttcagagatgaatgaatgattaactatagctagctagtaacatccatttt |
49963237 |
T |
|
| Q |
213 |
tgggttctgcgtatgtaagaccagtcaccataatttgacacttattcaagtttaagctagctattgtgtcttttgatggaaattgaatgctaattaaggg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49963238 |
tgggttctgcgtatgtaagaccagtcaccataatttgacacttattcaagtttaagctagctattgtgtcttttgatggaaattgaatgctaattaaggg |
49963337 |
T |
|
| Q |
313 |
atgaagacaattctctgattcgtcttctcattagtacgaatatacagtaagttagtgatgtaaccttcattgctttgcttggaagtcatgaactttttgt |
412 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49963338 |
atgaagacaattctctgattcgtctactcattagtacgaatatacagtaagttagtgatgtaaccttcattgctttgcttggaagtcatgaactttttgt |
49963437 |
T |
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| Q |
413 |
ttgttgacttgttcctacaaagatccacttcccccatgtgtctcaaatcgtcacaggattc |
473 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49963438 |
ttgttgacttgttcctacaaagatccacttcccccatgtgtctcaaatcgtcacaggattc |
49963498 |
T |
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