View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_high_24 (Length: 457)
Name: NF7550_high_24
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 79 - 438
Target Start/End: Complemental strand, 35916549 - 35916192
Alignment:
| Q |
79 |
gaaacaacatcaatccctttgtgggaaacagctcaacttccacttccagaagactgcatcacggaacatgcaacagcttgagcccaatgtcttaacttgg |
178 |
Q |
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| T |
35916549 |
gaaacaacatcaatccctttgtgggaaacagctcaacttccacttccagaagactgcatcacggaacatgcaacagcttgagcccaatgtcttaatttgg |
35916450 |
T |
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| Q |
179 |
tcttcaccaattcaggatcatcccctacattgcacaaagatgcaaacccgcaacctcgtcagcaaaactatacatgcatttaatctattaatttgtataa |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35916449 |
tcttcaccaattcaggatcatcccctacattgcacaaagatgcaaacccgcaacctcgtcagcaaaactatacatgcatttaatatattaatttgtataa |
35916350 |
T |
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| Q |
279 |
ttttttgccaataatgtataagacaaacacattgagatgttaaaaaataggtatatatatattatcggtaagaactcctgaccgaattctgaattatcgc |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35916349 |
ttttttgccaataatgtataagacaaacacattgagatgttaaaaaataggtatat--atattatcggtaagaactcctgaccgaattctgaattatcgc |
35916252 |
T |
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| Q |
379 |
agtcttattcccgtgagaaccaaaggattaaggcnnnnnnntgattgttaagaaaaatgc |
438 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35916251 |
agtcttattcccgtgagaaccaaaggattaaggcaaaaaaatgattgttaagaaaaatgc |
35916192 |
T |
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