View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7550_high_25 (Length: 451)

Name: NF7550_high_25
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7550_high_25
NF7550_high_25
[»] chr4 (9 HSPs)
chr4 (18-436)||(37953975-37954393)
chr4 (22-436)||(38072641-38073055)
chr4 (93-436)||(38061798-38062141)
chr4 (28-322)||(38058427-38058721)
chr4 (90-375)||(38086212-38086497)
chr4 (29-389)||(38081773-38082133)
chr4 (136-229)||(38125588-38125681)
chr4 (135-255)||(38129515-38129635)
chr4 (142-211)||(38145729-38145798)
[»] chr5 (1 HSPs)
chr5 (98-239)||(36065276-36065417)
[»] chr2 (5 HSPs)
chr2 (139-272)||(11803569-11803702)
chr2 (139-272)||(11811313-11811446)
chr2 (142-334)||(11933696-11933888)
chr2 (142-334)||(11946917-11947109)
chr2 (136-267)||(8338597-8338728)
[»] chr6 (1 HSPs)
chr6 (141-181)||(10792884-10792924)
[»] chr1 (1 HSPs)
chr1 (141-181)||(34268711-34268751)


Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Complemental strand, 37954393 - 37953975
Alignment:
Q  18 atttgctactaactgccacttctgaataagcttggttgcgttatgttccagtgtcctagaaactctgaatattgtcacagttgatggaacatgaactagt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37954393 atttgctactaactgccacttctgaataagcttggttgcgttatgttccagtgtcctagaaactctgaatattgtcacagttgatggaacatgaactagt 37954294  T
Q  118 tttaccttccatgctatgataactccaaagcttgctcctccacctcctctaatagcccaaaacagatcctcacccatcgattctctgtcaagaaccctac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37954293 tttaccttccatgctatgataactccaaagcttgctcctccacctcctctaatagcccaaaacagatcctcacccatcgattctctgtcaagaaccctac 37954194  T
Q  218 cattcacatcaattatgtgagcgtcaagtatattatcagccgaaagaccatatttacgcatcaagaatccatagccgccaccactgataagtccgctaac 317  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37954193 cattcacatcaattatgtgagcgtcaagtatattatcagctgaaagaccatatttacgcatcaagaatccatagccgccaccactgataagtccgctaac 37954094  T
Q  318 acctacggtagggcaaatacctgcagggaagccaagagttttgcttttttggctaattttgtacaaaagttcgccagcagttgcccctccttgaacccat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37954093 acctacggtagggcaaatacctgcagggaagccaagagttttgcttttttggctaattttgtacaaaagttcgccagcagttgcccctccttgaacccat 37953994  T
Q  418 gcacttctcttttctacat 436  Q
    |||||||||||||||||||    
T  37953993 gcacttctcttttctacat 37953975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 22 - 436
Target Start/End: Complemental strand, 38073055 - 38072641
Alignment:
Q  22 gctactaactgccacttctgaataagcttggttgcgttatgttccagtgtcctagaaactctgaatattgtcacagttgatggaacatgaactagtttta 121  Q
    ||||| ||||||||||| |||| |||||| ||||| || ||||||| ||| || | |||  | || |  || |||||||||||||| ||||| ||||| |    
T  38073055 gctacaaactgccacttgtgaacaagctttgttgcattttgttccaatgttcttggaacagtaaacaccgttacagttgatggaacttgaacaagtttaa 38072956  T
Q  122 ccttccatgctatgataactccaaagcttgctcctccacctcctctaatagcccaaaacagatcctcacccatcgattctctgtcaagaaccctaccatt 221  Q
     ||||||||  |  || || ||||| |||||||||||||| ||||||||||||||||||| ||| |||||||| | |||||||||||||| |||||| ||    
T  38072955 tcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaagaaacctaccctt 38072856  T
Q  222 cacatcaattatgtgagcgtcaagtatattatcagccgaaagaccatatttacgcatcaagaatccatagccgccaccactgataagtccgctaacacct 321  Q
    |||||||||||||||||| ||||  |  ||||| |||| |||||| |||||||||| ||||  ||||||||| ||||||||||   |||| | |||||||    
T  38072855 cacatcaattatgtgagcatcaatgacgttatcggccgcaagaccgtatttacgcaacaaggttccatagccaccaccactgaagtgtccaccaacacct 38072756  T
Q  322 acggtagggcaaatacctgcagggaagccaagagttttgcttttttggctaattttgtacaaaagttcgccagcagttgcccctccttgaacccatgcac 421  Q
    || ||||| |||| |||| ||||||| |||||||||||||||||||||  |||||||||  ||||||| |||   ||||| ||   ||||||||| |||     
T  38072755 acagtaggacaaacacctccagggaaaccaagagttttgcttttttgggcaattttgtagtaaagttcaccaagggttgcaccagattgaacccaagcag 38072656  T
Q  422 ttctcttttctacat 436  Q
    |||| ||||||||||    
T  38072655 ttctgttttctacat 38072641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 93 - 436
Target Start/End: Original strand, 38061798 - 38062141
Alignment:
Q  93 cacagttgatggaacatgaactagttttaccttccatgctatgataactccaaagcttgctcctccacctcctctaatagcccaaaacagatcctcaccc 192  Q
    |||| |||||||||| ||||| ||||| ||||||||||  || || |||||||| |||||||||||||||||||||||||||||||| | ||||||||||    
T  38061798 cacacttgatggaacttgaacaagtttaaccttccatgaaattatgactccaaaacttgctcctccacctcctctaatagcccaaaaaaaatcctcaccc 38061897  T
Q  193 atcgattctctgtcaagaaccctaccattcacatcaattatgtgagcgtcaagtatattatcagccgaaagaccatatttacgcatcaagaatccatagc 292  Q
    || | |||||||||||||| |||||| |||||||||||||||||||| ||||  ||||||||||| | ||||||  ||||||||| ||||  ||||||||    
T  38061898 attgcttctctgtcaagaaacctacccttcacatcaattatgtgagcatcaataatattatcagctgcaagaccgaatttacgcaccaagtttccatagc 38061997  T
Q  293 cgccaccactgataagtccgctaacacctacggtagggcaaatacctgcagggaagccaagagttttgcttttttggctaattttgtacaaaagttcgcc 392  Q
    | ||||||||||   |||| | ||||||||| ||||| |||  ||| ||||| || |||||| ||  ||||||| |||||||| ||||  ||||||| ||    
T  38061998 caccaccactgaagtgtccaccaacacctacagtaggacaagcaccggcaggaaaaccaagatttcggctttttcggctaattgtgtagtaaagttcacc 38062097  T
Q  393 agcagttgcccctccttgaacccatgcacttctcttttctacat 436  Q
    |   ||||| ||   ||||||||| ||| |||| ||||||||||    
T  38062098 aagtgttgcaccagattgaacccaagcagttcttttttctacat 38062141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 28 - 322
Target Start/End: Complemental strand, 38058721 - 38058427
Alignment:
Q  28 aactgccacttctgaataagcttggttgcgttatgttccagtgtcctagaaactctgaatattgtcacagttgatggaacatgaactagttttaccttcc 127  Q
    ||||||||||| ||||||||||| ||||| || ||||||| |||  | | |||  |||| | ||||||| |||||||||| ||||| ||||| | |||||    
T  38058721 aactgccacttgtgaataagctttgttgcattgtgttccaatgtttttggaacattgaagactgtcacaattgatggaacttgaacaagtttaatcttcc 38058622  T
Q  128 atgctatgataactccaaagcttgctcctccacctcctctaatagcccaaaacagatcctcacccatcgattctctgtcaagaaccctaccattcacatc 227  Q
    |||  || || |||||||| |||||||||||||| ||||||||||||||||||| ||| |||||||| | |||||||||||||| |||||| ||||||||    
T  38058621 atgaaattatgactccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaagaaacctacccttcacatc 38058522  T
Q  228 aattatgtgagcgtcaagtatattatcagccgaaagaccatatttacgcatcaagaatccatagccgccaccactgataagtccgctaacaccta 322  Q
    |||||||||||| |||| |||||||||||| | ||| ||  ||||||| | ||||  ||||||||| || ||||||||  |||| | ||||||||    
T  38058521 aattatgtgagcatcaattatattatcagctgcaagcccgaatttacgaaccaaggttccatagccaccgccactgatgtgtccaccaacaccta 38058427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 90 - 375
Target Start/End: Complemental strand, 38086497 - 38086212
Alignment:
Q  90 tgtcacagttgatggaacatgaactagttttaccttccatgctatgataactccaaagcttgctcctccacctcctctaatagcccaaaacagatcctca 189  Q
    ||||||| |||||||||| | ||| ||||| | ||||||||  |  || || ||||| |||||||||||||| ||||||||||||||||| | |||||||    
T  38086497 tgtcacaattgatggaacttcaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaagaaatcctca 38086398  T
Q  190 cccatcgattctctgtcaagaaccctaccattcacatcaattatgtgagcgtcaagtatattatcagccgaaagaccatatttacgcatcaagaatccat 289  Q
    ||||| | |||||||||||||| |||||| ||||||||||||||||  || ||||  || ||||| || | |||||| |||||||||| ||||  |||||    
T  38086397 cccattgcttctctgtcaagaaacctacccttcacatcaattatgtaggcatcaatgatgttatcggctgcaagaccgtatttacgcaacaaggttccat 38086298  T
Q  290 agccgccaccactgataagtccgctaacacctacggtagggcaaatacctgcagggaagccaagagttttgcttttttggctaatt 375  Q
    | || ||||||||||   |||| | ||||||||| ||||| |||| || ||||||||| |||||||||||||||||||||||||||    
T  38086297 atccaccaccactgaagtgtcccccaacacctacagtaggacaaacacttgcagggaaaccaagagttttgcttttttggctaatt 38086212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 29 - 389
Target Start/End: Complemental strand, 38082133 - 38081773
Alignment:
Q  29 actgccacttctgaataagcttggttgcgttatgttccagtgtcctagaaactctgaatattgtcacagttgatggaacatgaactagttttaccttcca 128  Q
    |||||||||| |||| |||||| ||||| || ||||||| ||  || | |||| | || |  ||||| |||| |||||| | ||| ||||||| ||||||    
T  38082133 actgccacttgtgaacaagctttgttgcattttgttccaatgctcttggaactgtaaacaccgtcactgttgctggaacttcaacaagttttatcttcca 38082034  T
Q  129 tgctatgataactccaaagcttgctcctccacctcctctaatagcccaaaacagatcctcacccatcgattctctgtcaagaaccctaccattcacatca 228  Q
    ||  || || |||||||| |||||||||||||| |||||||||||||||||   ||| |||||||| | |||||||||||| | |||||| |||||||||    
T  38082033 tgaaattatgactccaaaacttgctcctccaccacctctaatagcccaaaaataatcttcacccattgcttctctgtcaagtaacctacctttcacatca 38081934  T
Q  229 attatgtgagcgtcaagtatattatcagccgaaagaccatatttacgcatcaagaatccatagccgccaccactgataagtccgctaacacctacggtag 328  Q
    ||||||||||| || | || |||||| || |  | |||||||||||||| ||||  |||||||||||||||||||| | |||| | ||||||||  ||||    
T  38081933 attatgtgagcatcgattacattatccgcggctaaaccatatttacgcaacaaggttccatagccgccaccactgaaatgtccaccaacacctattgtag 38081834  T
Q  329 ggcaaatacctgcagggaagccaagagttttgcttttttggctaattttgtacaaaagttc 389  Q
    | |||  ||| || |||||  ||||| ||  |||||||||||||||| ||||  |||||||    
T  38081833 gacaagcaccagctgggaaagcaagatttcggcttttttggctaattgtgtagtaaagttc 38081773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 38125681 - 38125588
Alignment:
Q  136 ataactccaaagcttgctcctccacctcctctaatagcccaaaacagatcctcacccatcgattctctgtcaagaaccctaccattcacatcaa 229  Q
    ||||||||||| |||||||||||||||||||||||||||||||| || || |||||||| ||||  || ||||||| ||||||||| |||||||    
T  38125681 ataactccaaaacttgctcctccacctcctctaatagcccaaaaaagttcttcacccattgatttcctatcaagaatcctaccattaacatcaa 38125588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 135 - 255
Target Start/End: Complemental strand, 38129635 - 38129515
Alignment:
Q  135 gataactccaaagcttgctcctccacctcctctaatagcccaaaacagatcctcacccatcgattctctgtcaagaaccctaccattcacatcaattatg 234  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||| || ||||| | ||   |||||||||  |||||||| |||||||| ||     
T  38129635 gataactccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttcccccatagttttcttgtcaagaattctaccattgacatcaataatt 38129536  T
Q  235 tgagcgtcaagtatattatca 255  Q
    | ||| ||||  |||||||||    
T  38129535 ttagcatcaacaatattatca 38129515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 38145798 - 38145729
Alignment:
Q  142 ccaaagcttgctcctccacctcctctaatagcccaaaacagatcctcacccatcgattctctgtcaagaa 211  Q
    ||||||||| | |||||||| ||||| ||||||||||| |||||||| ||||| | || |||||||||||    
T  38145798 ccaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaa 38145729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 36065417 - 36065276
Alignment:
Q  98 ttgatggaacatgaactagttttaccttccatgctatgataactccaaagcttgctcctccacctcctctaatagcccaaaacagatcctcacccatcga 197  Q
    ||||||||||||||||||||||||   ||| |||||| |||||  |||||||||||||||||| ||||||||| |||||||||| ||||||| |||| ||    
T  36065417 ttgatggaacatgaactagttttatactccctgctatcataacaacaaagcttgctcctccacatcctctaatcgcccaaaacatatcctcaaccattga 36065318  T
Q  198 ttctctgtcaagaaccctaccattcacatcaattatgtgagc 239  Q
    |||||| ||||||| |||  ||||||||||||||| ||||||    
T  36065317 ttctctatcaagaagcctttcattcacatcaattaagtgagc 36065276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 272
Target Start/End: Original strand, 11803569 - 11803702
Alignment:
Q  139 actccaaagcttgctcctccacctcctctaatagcccaaaacagatcctcacccatcgattctctgtcaagaaccctaccattcacatcaattatgtgag 238  Q
    |||||||||||||  |||||||||||||| ||||||||||| ||||||||||||||| ||| ||| |  || | | | ||||| ||||| |  || ||||    
T  11803569 actccaaagcttgaccctccacctcctcttatagcccaaaatagatcctcacccatcaattttctatttaggatctttccattaacatctaccatttgag 11803668  T
Q  239 cgtcaagtatattatcagccgaaagaccatattt 272  Q
    | |||| || ||||||||| | ||||||||||||    
T  11803669 catcaattacattatcagctgcaagaccatattt 11803702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 272
Target Start/End: Original strand, 11811313 - 11811446
Alignment:
Q  139 actccaaagcttgctcctccacctcctctaatagcccaaaacagatcctcacccatcgattctctgtcaagaaccctaccattcacatcaattatgtgag 238  Q
    ||||||||||||| ||||||||||||||| ||||||||||| | ||| |||||||||  |||||| |  ||||   | || || ||||| ||||| ||||    
T  11811313 actccaaagcttgatcctccacctcctcttatagcccaaaataaatcttcacccatcatttctctatttagaatgtttccgttaacatcgattatttgag 11811412  T
Q  239 cgtcaagtatattatcagccgaaagaccatattt 272  Q
    | |||| |||||||||||  | ||||||||||||    
T  11811413 catcaattatattatcagttgcaagaccatattt 11811446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 334
Target Start/End: Complemental strand, 11933888 - 11933696
Alignment:
Q  142 ccaaagcttgctcctccacctcctctaatagcccaaaacagatcctcacccatcgattctctgtcaagaaccctaccattcacatcaattatgtgagcgt 241  Q
    |||||||| ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||| ||| ||||| |  |||||||| ||||| ||||| || || |    
T  11933888 ccaaagctagctccaccaccacctttaatagcccaaaaaagatcttctcccattgattttctatcaagcaatctaccattaacatcgattatttgtgcat 11933789  T
Q  242 caagtatattatcagccgaaagaccatatttacgcatcaagaatccatagccgccaccactgataagtccgctaacacctacggtagggcaaa 334  Q
    | |  ||||||||| | |||||||||||||| | ||||| |   ||||| || |||||||| | | |||| | |||||| |||||||| ||||    
T  11933788 cgataatattatcaactgaaagaccatattttctcatcatgttaccatatccaccaccacttaaatgtcctccaacaccaacggtaggacaaa 11933696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 334
Target Start/End: Complemental strand, 11947109 - 11946917
Alignment:
Q  142 ccaaagcttgctcctccacctcctctaatagcccaaaacagatcctcacccatcgattctctgtcaagaaccctaccattcacatcaattatgtgagcgt 241  Q
    |||||||| ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||| ||| ||||| |  |||||||| ||||| ||||| || || |    
T  11947109 ccaaagctagctccaccaccacctttaatagcccaaaaaagatcttctcccattgattttctatcaagcaatctaccattaacatcgattatttgtgcat 11947010  T
Q  242 caagtatattatcagccgaaagaccatatttacgcatcaagaatccatagccgccaccactgataagtccgctaacacctacggtagggcaaa 334  Q
    | |  ||||||||| | |||||||||||||| | ||||| |   ||||| || |||||||| | | |||| | |||||| |||||||| ||||    
T  11947009 cgataatattatcaactgaaagaccatattttctcatcatgttaccatatccaccaccacttaaatgtcctccaacaccaacggtaggacaaa 11946917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 267
Target Start/End: Complemental strand, 8338728 - 8338597
Alignment:
Q  136 ataactccaaagcttgctcctccacctcctctaatagcccaaaacagatcctcacccatcgattctctgtcaagaaccctaccattcacatcaattatgt 235  Q
    ||||| ||||| || || || ||||| || |||||||||||||||||||| || ||||| |||| ||| ||||||    ||||||| |||||||| || |    
T  8338728 ataacaccaaaactagcaccaccaccacccctaatagcccaaaacagatcttctcccattgattttctatcaagagtattaccattgacatcaataattt 8338629  T
Q  236 gagcgtcaagtatattatcagccgaaagacca 267  Q
      |||||||  ||||||||| | |||||||||    
T  8338628 ttgcgtcaatgatattatcaacagaaagacca 8338597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 10792924 - 10792884
Alignment:
Q  141 tccaaagcttgctcctccacctcctctaatagcccaaaaca 181  Q
    |||||| |||||||||||||||||||||||||| |||||||    
T  10792924 tccaaaacttgctcctccacctcctctaatagctcaaaaca 10792884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 34268711 - 34268751
Alignment:
Q  141 tccaaagcttgctcctccacctcctctaatagcccaaaaca 181  Q
    |||||| |||||||||||||||||||||||||| |||||||    
T  34268711 tccaaaacttgctcctccacctcctctaatagctcaaaaca 34268751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University