View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_high_26 (Length: 441)
Name: NF7550_high_26
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 20 - 423
Target Start/End: Original strand, 39270291 - 39270694
Alignment:
| Q |
20 |
ttctctttatatttaataataatatcctcttcttctttgttgtaaactcctctactcctcaattaacaagaaacaaattaatttagaattatgggcctct |
119 |
Q |
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| T |
39270291 |
ttctctttatatttaataataatatcctcttcttctttgttgtaaactcctctactcctcaattaacaagaaacaaattaattgagaattatgggcctct |
39270390 |
T |
|
| Q |
120 |
caaactttccctatgcagcagaaggtgttgtacctgtgattgtaatgaacactgttctatctatggttctattaaagaacatgtttagatctatgcttca |
219 |
Q |
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| T |
39270391 |
caaactttccctatgcagcagaaggtgttgtacctgtgattgtaatgaacactgttctatctatggttctattaaagaacatgtttagatctatgcttca |
39270490 |
T |
|
| Q |
220 |
agtagttggttgcacatcaacaactaattcttcttattctccaaatattatggaagaattagaagaagaacaagtgtactcccaagagattagtaattca |
319 |
Q |
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| T |
39270491 |
agtagttggttgcacatcaacaactaattcttcttattctccaaatattatggaagaattagaagaagaacaagtgtactcccaagagattagtaattca |
39270590 |
T |
|
| Q |
320 |
agggaaaggagggtgtcaataacacaatacaagttcttgtgttataacaggtccaacatagcaagaagtagtagttcatgtggatggacaagtcctatgg |
419 |
Q |
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| T |
39270591 |
agggaaaggagggtgtcaataacacaatacaagttcttgtgttataacaggtccaacatagcaagaagtagtagttcatgtggatggacaagtcctatgg |
39270690 |
T |
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| Q |
420 |
taga |
423 |
Q |
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|||| |
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| T |
39270691 |
taga |
39270694 |
T |
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