View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_high_31 (Length: 415)
Name: NF7550_high_31
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 32103484 - 32103876
Alignment:
| Q |
1 |
agtgaggaagaggaaaagaaaatgatgacgtacagttgttgtgggcaaagttgccagaagaggctataagtccactgaacagattgcaccgcagcctgca |
100 |
Q |
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| T |
32103484 |
agtgaggaagaggaaaagaaaatgatgacgtacagttgttgtgggcaaagttgccagaagaggctataagtccactgaacagattgcaccgcagcctgca |
32103583 |
T |
|
| Q |
101 |
acatgttttgaagcttactgcctaatggagatggagccgccattctttattcattcagtcattaccaaacagttttttctttcatttctctgcaatattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32103584 |
acatgttttgaagcttactgcctaatggagatggagcagccattctttattcattcagtcattaccaaacagttttttctttcatttctctgcaatattt |
32103683 |
T |
|
| Q |
201 |
aatcatatctaaaacacctttccaaaagtaggaaaaaagtctgaaacaggtaaaattggtttctgttgtttcatgacaagtaaatagacaatgaaaaatc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32103684 |
aatcatatctaaaacacctttccaaaagtaggaaaaaagtctgaaacaggtaaaattggtttctgttgtttcatgacaagtaaatagacaacgaaaaatc |
32103783 |
T |
|
| Q |
301 |
aagagagaaaagatggtaagctgaactttcaatgaagaaagtatatagaatagaagacttgcaggtatgtgtgtatggcttgtaggtgagact |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32103784 |
aagagagaaaagatggtaagctgaactttcaatgaagaaagtatatagaatagaagacttgcaggtatgtgtgtatggcttgtaggtgagact |
32103876 |
T |
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