View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7550_high_36 (Length: 393)
Name: NF7550_high_36
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_high_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 376
Target Start/End: Complemental strand, 4511316 - 4510966
Alignment:
| Q |
16 |
acatcagccattgtgtatgtactttgtataaaatagtgttatgtttattcatttgatttatcatatgaggtatatttacaagaataaatatgtgtgcaaa |
115 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
4511316 |
acattagccattgtgtatgtactttgtataaaatagtgttaagtttattcatttgatttatcatatgaggtata-----------aaata---gtgcaaa |
4511231 |
T |
|
| Q |
116 |
ctatatatggaagacacatcaaccatgtaagtgcagataattacacatgtatggatcctttatgccctcgcaagacggaggaaggttcaacatgagaaac |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4511230 |
ctatatatggaagacacatcaaccatgtaagtgcagataat-acacatgtatggatcctttatgccctcgcaagacggaggaaggttcaacatgagaaac |
4511132 |
T |
|
| Q |
216 |
ttctgtctttgcaacaaggtcacaaacaaagtggtagtaaatggtgaggtgtttcatccttgtgtggtaaataagattctatga-----taattgccgcc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4511131 |
ttctgtctttgcaacaaggtcacaaacaaagtggtagtaaatggtgaggtgtttcatccttgtgtggtaaataagattctatgataatataattgccgcc |
4511032 |
T |
|
| Q |
311 |
aacgttatcagtaaaattgttggtggttgagggcgttgcatgccaagttcaagcaagagtttttgc |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4511031 |
aacgttatcagtaaaattgttggtggttgagggcgttgcatgccaagttcaagcaagagtttttgc |
4510966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University