View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_high_40 (Length: 372)
Name: NF7550_high_40
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 50898145 - 50898500
Alignment:
| Q |
1 |
ctttaacgacctcgctcggtctcaaatctttaggaatgatttagaacgacaacgtaatctccagctttatgcaacatgagaatctatggctctaaataat |
100 |
Q |
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| T |
50898145 |
ctttaacaacctcgctcggtctcaaatctttaggaatgatttagaacgacaacgtaatctccagctttatgcaacatgagaatctatggctctaaataat |
50898244 |
T |
|
| Q |
101 |
cacatggcattgtagaatagagacacgcctcagaaaaagggaggattataagagcttgacaccaataaaaaacatgcaagaggagaagcataaacgcatg |
200 |
Q |
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| T |
50898245 |
cacatggcattgtagaatagagacacgcctcagaaaaagggaggattataagagcttgacaccaataaaaaacatgcaagaggagaagcataaacgcatg |
50898344 |
T |
|
| Q |
201 |
gcgaactttgctttggagccgacaatttactcggtaacctgattattcaaaaagcttccattcctccgtctaagtccttcgttgctttgagttgtataca |
300 |
Q |
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| T |
50898345 |
gcgaactttgctttggagccgacaatttactcggtaacctgattattcaaaaagcttccattcctccgtctaagtccttcgttgctttgagttgtataca |
50898444 |
T |
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| Q |
301 |
acacaacatacattgacaccctttgtcattgtttatataatgatggatgattgatg |
356 |
Q |
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| T |
50898445 |
acacaacatacattgacaccctttgtcattgtttatataatgatggatgattgatg |
50898500 |
T |
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