View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7550_high_43 (Length: 356)
Name: NF7550_high_43
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_high_43 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 14 - 338
Target Start/End: Complemental strand, 33614804 - 33614483
Alignment:
| Q |
14 |
gatgaaatccattcaaaacaattgtgaggacaaaacgaggcatttgtctgagagaattccacacttacattctattatgttttcatttgttttttgtagt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33614804 |
gatgaaatccattcaaaacaattgtgaggacaaaacgaggcatttgtctgagagaattccacacttacattctattatgttttcatttgttttttgtagt |
33614705 |
T |
|
| Q |
114 |
tatatatatgttggcactatgatgattgattttattgtcatatgatattttatatgattaaaaaatcctcctactcattctgagtgccattctagtcatt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | |
|
|
| T |
33614704 |
tatatatatgttggcactatgatgattgattttattgtcatatgatattttatatgattaaaaaatcctcctactcattctgagtgccattcaa---aat |
33614608 |
T |
|
| Q |
214 |
ataatttannnnnnncttataacttaatatgagatcactgtgatgactccataaaattcaagctcaacagaccgcagtgcagggctttcttctcttttga |
313 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33614607 |
ataatttatttttttcttataacttaatatgagatcactgtgatgactacataaaattcaagctcaacagaccgcagtgcagggctttcttctcttttga |
33614508 |
T |
|
| Q |
314 |
gagattgattgctttgcgtgtcgat |
338 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
33614507 |
gagattgattgctttgcgtgtcgat |
33614483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 241 - 338
Target Start/End: Complemental strand, 45029492 - 45029399
Alignment:
| Q |
241 |
tatgagatcactgtgatgactccataaaattcaagctcaacagaccgcagtgcagggctttcttctcttttgagagattgattgctttgcgtgtcgat |
338 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
45029492 |
tatgagatcacgatgatgactccataaaattcaagctcaacagaccgcagtgcagtgctttcttctctttcgaga----gattgctttgcgtgtcgat |
45029399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 238 - 303
Target Start/End: Complemental strand, 44254360 - 44254295
Alignment:
| Q |
238 |
taatatgagatcactgtgatgactccataaaattcaagctcaacagaccgcagtgcagggctttct |
303 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44254360 |
taatatgagatcacgatgatgactccataaaattcaagctcaacagaccgcagtgcagtgctttct |
44254295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 29159994 - 29160051
Alignment:
| Q |
21 |
tccattcaaaacaattgtgaggacaaaacgaggcatttgtctgagagaattccacact |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29159994 |
tccattcaaaacaattgtgaggacaaaacgaggcatttgtctgagagaattccacact |
29160051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University