View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_high_44 (Length: 353)
Name: NF7550_high_44
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_high_44 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 336
Target Start/End: Complemental strand, 34464831 - 34464512
Alignment:
| Q |
13 |
aatatgacctaaacatatttgcaattgtcatacgtctatcctagacacaccacacctacctaatagtannnnnnnnnnnn-gttacaacatcacctatag |
111 |
Q |
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| T |
34464831 |
aatatgacctaaacatatttgcaattgtcatacgtctatcctagacataccacacccacctaatagtatttttttgtttttgttacaacatcacctatag |
34464732 |
T |
|
| Q |
112 |
tttattttttgtattatgtaggacacactactatagtccatctcgcaggtcaatgctaattagacagattatagagtatattacaaacaacgacatagta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
34464731 |
tttattttttgtattatgtaggacacactactatagtccatctcgcaggtcaatgctaattagacagattatagagtatattacaaacaacgacgtatta |
34464632 |
T |
|
| Q |
212 |
aagtgcaatttggaaacgtgcatacaatactggaataccacacttccaaatttcagacgtgaagcgtgttaaatcatgtcactaagctaagcaagctatt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
34464631 |
aagtgcaatttggaaacgtgcatacaatactggaataccacacttccaaatttcagacgtgaagcgtgttaaattatgtcact-----aagcaagctatt |
34464537 |
T |
|
| Q |
312 |
agctttgtcaaaaacctacgggaat |
336 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
34464536 |
agctttgtcaaaaacctacgggaat |
34464512 |
T |
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