View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7550_high_51 (Length: 307)

Name: NF7550_high_51
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7550_high_51
NF7550_high_51
[»] chr6 (1 HSPs)
chr6 (19-292)||(35176294-35176566)
[»] chr5 (1 HSPs)
chr5 (26-242)||(42909103-42909318)
[»] chr7 (4 HSPs)
chr7 (40-112)||(26854946-26855018)
chr7 (134-182)||(26855041-26855089)
chr7 (198-292)||(11695738-11695838)
chr7 (43-112)||(11696022-11696091)
[»] chr4 (2 HSPs)
chr4 (40-185)||(25611737-25611882)
chr4 (52-110)||(7894191-7894249)
[»] chr3 (2 HSPs)
chr3 (40-124)||(15844521-15844605)
chr3 (45-185)||(54418344-54418484)
[»] chr2 (4 HSPs)
chr2 (40-112)||(35411266-35411338)
chr2 (198-256)||(33474838-33474900)
chr2 (43-112)||(33475084-33475153)
chr2 (134-182)||(35411195-35411243)
[»] chr8 (2 HSPs)
chr8 (198-242)||(43942735-43942780)
chr8 (220-260)||(7252445-7252485)
[»] chr1 (4 HSPs)
chr1 (198-256)||(50137999-50138061)
chr1 (199-242)||(43316528-43316573)
chr1 (43-112)||(50138245-50138314)
chr1 (198-242)||(51719780-51719825)
[»] scaffold0047 (1 HSPs)
scaffold0047 (43-112)||(50487-50556)


Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 35176294 - 35176566
Alignment:
Q  19 agttatcttctaaacaaatgttagccattgatatattattattatatttggatggttaagatctattaccggtaacttgttatcaactttttgtagtttt 118  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35176294 agttaccttctaaacaaatgttagccattgatatattattattatatttggatggttaagatttattaccggtaacttgttatcaactttttgtagtttt 35176393  T
Q  119 gtctacccnnnnnnngtgaccccacctatgaattgtttatgattaaacttattaatgggcttttgagcttatttgtgacattcatgtgttcttcaagaat 218  Q
    ||| ||||       ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35176394 gtccacccaaaaaa-gtgacaccacttatgaattgtttatgattaaacttattaatgggcttttgagcttatttgtgacattcatgtgttcttcaagaat 35176492  T
Q  219 cttcatcttcatcaattttttcttaaaaattcagatctaaaaaatcactaccacaaccacaagaaaatgttcat 292  Q
    |||||||| ||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  35176493 cttcatctgcatcaattttttcttaaaaattcagatttgaaaaatcacaaccacaaccacaagaaaatgttcat 35176566  T

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Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 42909103 - 42909318
Alignment:
Q  26 ttctaaacaaatgttagccattgatatattattattatatttggatggttaagatctattaccggtaacttgttatcaactttttgtagttttgtctacc 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||     
T  42909103 ttctaaacaaatgttagccattgatatattattattatatttggatggttaaaatctattaccagtaacttgttatcaactttttgtagttttgtctaca 42909202  T
Q  126 cnnnnnnngtgaccccacctatgaattgtttatgattaaacttattaatgggcttttgagcttatttgtgacattcatgtgttcttcaagaatcttcatc 225  Q
            ||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||| |||   |||||||||||||| |||||||||||||    
T  42909203 aaaacacagtgaccccacctatgaattatttatgattaaacctattaatgggtttttgagcttatctgttgtattcatgtgttctt-aagaatcttcatc 42909301  T
Q  226 ttcatcaattttttctt 242  Q
    ||||||||||| |||||    
T  42909302 ttcatcaatttgttctt 42909318  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 26854946 - 26855018
Alignment:
Q  40 tagccattgatatattattattatatttggatggttaagatctattaccggtaacttgttatcaactttttgt 112  Q
    ||||||| ||||||||||||||||||||||| |||||||||| ||||||| | || |||||||||||||||||    
T  26854946 tagccatagatatattattattatatttggacggttaagatcaattaccgattacctgttatcaactttttgt 26855018  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 26855041 - 26855089
Alignment:
Q  134 gtgaccccacctatgaattgtttatgattaaacttattaatgggctttt 182  Q
    ||||||||||||||||||||||||| ||||||||  |||||| ||||||    
T  26855041 gtgaccccacctatgaattgtttataattaaactagttaatgagctttt 26855089  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 292
Target Start/End: Complemental strand, 11695838 - 11695738
Alignment:
Q  198 attcatgtgttcttcaa-gaatcttcatcttcatcaattttttct---taaaaattcagatctaaaaaatc---actaccacaaccacaagaaaatgttc 290  Q
    |||||||||||||| || ||||||||||||| | |||||||||||   |||||||||||||||   |||||   |  |||||||||||||||||||||||    
T  11695838 attcatgtgttctttaaagaatcttcatctttaccaattttttcttcctaaaaattcagatct-ttaaatctgaaaaaccacaaccacaagaaaatgttc 11695740  T
Q  291 at 292  Q
    ||    
T  11695739 at 11695738  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 11696091 - 11696022
Alignment:
Q  43 ccattgatatattattattatatttggatggttaagatctattaccggtaacttgttatcaactttttgt 112  Q
    ||||||||||||||||||| ||| |||| |||| ||||| |  |||||| |||| ||| |||||||||||    
T  11696091 ccattgatatattattattttatatggacggttcagatcaaagaccggttacttattaccaactttttgt 11696022  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 185
Target Start/End: Original strand, 25611737 - 25611882
Alignment:
Q  40 tagccattgatatattattattatatttggatggttaagatctattaccggtaacttgttatcaactttttgtagttttgtctac-ccnnnnnnngtgac 138  Q
    |||||||||| |||||||||||||||||||| |||| ||||||| ||| ||  || | |||||||||||||||| ||||||||||  |        ||||    
T  25611737 tagccattgaaatattattattatatttggacggttgagatctactactggctacctattatcaactttttgtaattttgtctacaacaaaaacaatgac 25611836  T
Q  139 cccacctatgaattgtttatgattaaacttattaatgggcttttgag 185  Q
    ||||| || ||||||||||| ||| || |||||||||||||||||||    
T  25611837 cccacataggaattgtttatcatt-aatttattaatgggcttttgag 25611882  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 7894191 - 7894249
Alignment:
Q  52 tattattattatatttggatggttaagatctattaccggtaacttgttatcaacttttt 110  Q
    ||||||||||||||||||| |||||||||  ||||||||| |  ||||| |||||||||    
T  7894191 tattattattatatttggacggttaagattaattaccggttatctgttaccaacttttt 7894249  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 15844605 - 15844521
Alignment:
Q  40 tagccattgatatattattattatatttggatggttaagatctattaccggtaacttgttatcaactttttgtagttttgtctac 124  Q
    |||||||||| |||||||||||||||||||| |||| | ||||| ||| ||  || | |||||||||||||||| ||||||||||    
T  15844605 tagccattgagatattattattatatttggacggttgaaatctactactggctacctattatcaactttttgtaattttgtctac 15844521  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 185
Target Start/End: Complemental strand, 54418484 - 54418344
Alignment:
Q  45 attgatatattattattatatttggatggttaagatctattaccggtaacttgttatcaactttttgtagttttgtctac-ccnnnnnnngtgaccccac 143  Q
    ||||| |||||||||||||||||||| |||| ||||||| |||||   || | ||||||| |||||||| ||||||||||  |        |||||||||    
T  54418484 attgagatattattattatatttggacggttgagatctactaccgactacctattatcaattttttgtaattttgtctacaacaaaaacaatgaccccac 54418385  T
Q  144 ctatgaattgtttatgattaaacttattaatgggcttttgag 185  Q
     || ||||||||||| ||| || |||||||||||||||||||    
T  54418384 ataggaattgtttatcatt-aatttattaatgggcttttgag 54418344  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 35411338 - 35411266
Alignment:
Q  40 tagccattgatatattattattatatttggatggttaagatctattaccggtaacttgttatcaactttttgt 112  Q
    ||||||| ||||||||||||||||||||| | |||||||||| ||||  ||| |||||||  |||||||||||    
T  35411338 tagccatcgatatattattattatatttgaacggttaagatcaattattggttacttgttgccaactttttgt 35411266  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 33474900 - 33474838
Alignment:
Q  198 attcatgtgttcttcaa-gaatcttcatcttcatcaattttttct---taaaaattcagatct 256  Q
    ||||||||||||||||| ||||||||||||| | |||||||||||   |||||||||||||||    
T  33474900 attcatgtgttcttcaaagaatcttcatctttaccaattttttctttctaaaaattcagatct 33474838  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 33475153 - 33475084
Alignment:
Q  43 ccattgatatattattattatatttggatggttaagatctattaccggtaacttgttatcaactttttgt 112  Q
    ||||||||||||||||||| ||| |||| |||| ||||| |  |||||| |||| ||| |||||||||||    
T  33475153 ccattgatatattattattttatatggacggttcagatcaaagaccggttacttattaccaactttttgt 33475084  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 35411243 - 35411195
Alignment:
Q  134 gtgaccccacctatgaattgtttatgattaaacttattaatgggctttt 182  Q
    ||||||| ||||||||||||||||| ||||||||  |||||||| ||||    
T  35411243 gtgaccctacctatgaattgtttataattaaactagttaatgggttttt 35411195  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 43942780 - 43942735
Alignment:
Q  198 attcatgtgttcttcaa-gaatcttcatcttcatcaattttttctt 242  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||    
T  43942780 attcatgtgttcttcaaagaatcttcatcttcaccaattttttctt 43942735  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 7252445 - 7252485
Alignment:
Q  220 ttcatcttcatcaattttttcttaaaaattcagatctaaaa 260  Q
    |||||||||| |||||| ||||||||||| |||||||||||    
T  7252445 ttcatcttcaccaatttgttcttaaaaatccagatctaaaa 7252485  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 50138061 - 50137999
Alignment:
Q  198 attcatgtgttcttcaa-gaatcttcatcttcatcaattttttct---taaaaattcagatct 256  Q
    ||||||||||||||||| ||||||||||||| | |||||||||||   |||||||||||||||    
T  50138061 attcatgtgttcttcaaagaatcttcatctttaccaattttttctttctaaaaattcagatct 50137999  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 43316528 - 43316573
Alignment:
Q  199 ttcatgtgttcttcaa--gaatcttcatcttcatcaattttttctt 242  Q
    ||||||||||||||||  ||||||||||||||| ||||||||||||    
T  43316528 ttcatgtgttcttcaaaagaatcttcatcttcaccaattttttctt 43316573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 50138314 - 50138245
Alignment:
Q  43 ccattgatatattattattatatttggatggttaagatctattaccggtaacttgttatcaactttttgt 112  Q
    ||||||||||||||||||| ||| |||| |||| ||||| |  |||||| |||| ||| |||||||||||    
T  50138314 ccattgatatattattattttatatggacggttcagatcaaagaccggttacttattaccaactttttgt 50138245  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 51719780 - 51719825
Alignment:
Q  198 attcatgtgttcttcaa-gaatcttcatcttcatcaattttttctt 242  Q
    ||||||||||||||||| |||||||||| |||| ||||||||||||    
T  51719780 attcatgtgttcttcaaagaatcttcatattcaccaattttttctt 51719825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 50487 - 50556
Alignment:
Q  43 ccattgatatattattattatatttggatggttaagatctattaccggtaacttgttatcaactttttgt 112  Q
    ||||||||||||||||||| ||| |||| |||| ||||| |  |||||| |||| ||| |||||||||||    
T  50487 ccattgatatattattattttatatggacggttcagatcaaagaccggttacttattaccaactttttgt 50556  T

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