View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7550_high_52 (Length: 305)
Name: NF7550_high_52
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_high_52 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 13113769 - 13113485
Alignment:
| Q |
1 |
catgatgcatcgaccgttaattaagctagggtagcaaatatcttgttcaattaatttcgtgatcttcttcttcaataataatgattgtacgcgtctcttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
13113769 |
catgatgcatcgaccgttaattaagctagggtagcaaatatcttgttcaattaatttcgtgatcttcttcttcaataataatgattgtacgcgtctcctc |
13113670 |
T |
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| Q |
101 |
aactaccactccgtttggaatgtcatgtatgtgaggcacatgtcacttgtgccactatcagaaattaaatacacacaatattatatgacattttggtgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13113669 |
aactaccactccgtttggaatgtcatgtatgtgaggcacatgtcacttgtgccactatcagaaattaaatacacacaatattatatgacattttggtgtg |
13113570 |
T |
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| Q |
201 |
gttgatcaaattcaatggattgaatcaatgtcatataattggaggaacaaccgtttttattgtttatcattctagtacatagtat |
285 |
Q |
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| T |
13113569 |
gttgatcaaattcaatggattgaatcaatgtcatataattggaggaacaaccgtttttattgtttatcattctagtacatagtat |
13113485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 13043773 - 13043489
Alignment:
| Q |
1 |
catgatgcatcgaccgttaattaagctagggtagcaaatatcttgttcaattaatttcgtgatcttcttcttcaataataatgattgtacgcgtctcttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
13043773 |
catgatgcatcgaccgttaattaagctagggtagcaaatatcttgttcaattaatttcgtgatcttcttcatcaataataatgattgtacgcgtctcctc |
13043674 |
T |
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| Q |
101 |
aactaccactccgtttggaatgtcatgtatgtgaggcacatgtcacttgtgccactatcagaaattaaatacacacaatattatatgacattttggtgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13043673 |
aactaccactccgtttggaatgtcatgtatgtgaggcacatgtcacttgtgccactatcagaaattaaatacacacaatattatatgacattttggtgtg |
13043574 |
T |
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| Q |
201 |
gttgatcaaattcaatggattgaatcaatgtcatataattggaggaacaaccgtttttattgtttatcattctagtacatagtat |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13043573 |
gttgatcaaattcaatggattgaatcaatgtcatataattggaggaacaaccgtttttattgtttatcattctagtacatagtat |
13043489 |
T |
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