View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7550_high_53 (Length: 302)

Name: NF7550_high_53
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7550_high_53
NF7550_high_53
[»] chr3 (1 HSPs)
chr3 (17-302)||(39270029-39270314)


Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 39270029 - 39270314
Alignment:
Q  17 acacgtggctttctcaaacatgctatttttgtgatagtgaaagctccatatannnnnnngttttatcacctcactcatatacttacaaaaccctacacgt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  39270029 acacgtggctttctcaaacatgctatttttgtgatagtgaaagctccatatatttttttgttttatcacctcactcatatacttacaaaaccctacacgt 39270128  T
Q  117 gtcgccacgtgtatatatgaccatggttagtgttcttgtagtcatagatatgtgaccataataataatgtatctatatgagtttcatgttttttgccata 216  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39270129 gtcgccacgtgtatatatgaccatggttagtgtttttgtagtcatagatatgtgaccataataataatgtatctatatgagtttcatgttttttgccata 39270228  T
Q  217 ataaataattagaattaaatgttgatgtaatatatgtttggctattaatgttgcattgcattttctctttatatttaataataata 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39270229 ataaataattagaattaaatgttgatgtaatatatgtttggctattaatgttgcattgcattttctctttatatttaataataata 39270314  T

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