View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7550_high_55 (Length: 299)

Name: NF7550_high_55
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7550_high_55
NF7550_high_55
[»] chr3 (10 HSPs)
chr3 (98-281)||(7787940-7788124)
chr3 (9-97)||(5488925-5489013)
chr3 (9-97)||(5501772-5501860)
chr3 (9-95)||(5524636-5524722)
chr3 (9-95)||(20342465-20342551)
chr3 (9-97)||(5445146-5445234)
chr3 (9-97)||(5855275-5855363)
chr3 (9-90)||(5483475-5483556)
chr3 (9-74)||(5453729-5453794)
chr3 (9-81)||(5803712-5803784)
[»] chr6 (1 HSPs)
chr6 (9-74)||(25810601-25810666)
[»] chr5 (1 HSPs)
chr5 (35-91)||(22689416-22689472)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 98 - 281
Target Start/End: Complemental strand, 7788124 - 7787940
Alignment:
Q  98 tttaagtcaacacatttttagtgtgattcacccgattccttcgcttcctatatattcacccatctatgc-gacgattcccccaatcattctttctgccat 196  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  7788124 tttaaatcaacacatttttagtgtgattcacccaattccttcgcttcctatatattcacccatctatgccgacgattctcccaatcattctttctgccat 7788025  T
Q  197 gcgcttgaattttgagcatgagaaggttaggtattttaccaagacgcggtgtaaaattaactgagaatcaagaaccgacgaggat 281  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  7788024 gcgcttgaattttgagcatgagaaggttaggtattttaccaagatgcggtgtaaaattaactgagaatcaagaaccaacgaggat 7787940  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 5488925 - 5489013
Alignment:
Q  9 gaagaatattgcttgttttgatatttctatgcatgattcttagtgtagaaccttgatgaagatacagaagccctcaagcaattccatca 97  Q
    ||||||||||||||||||| |||| |||||| |||||||||||||||||| |||||||||||||||  ||||||| |||||||||||||    
T  5488925 gaagaatattgcttgttttcatatctctatgtatgattcttagtgtagaatcttgatgaagatacaacagccctcgagcaattccatca 5489013  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 5501772 - 5501860
Alignment:
Q  9 gaagaatattgcttgttttgatatttctatgcatgattcttagtgtagaaccttgatgaagatacagaagccctcaagcaattccatca 97  Q
    ||||||||||||||||||| |||| |||||| |||||||||||||||||| |||||||||||||||  ||||||| |||||||||||||    
T  5501772 gaagaatattgcttgttttcatatctctatgtatgattcttagtgtagaatcttgatgaagatacaacagccctcgagcaattccatca 5501860  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 5524636 - 5524722
Alignment:
Q  9 gaagaatattgcttgttttgatatttctatgcatgattcttagtgtagaaccttgatgaagatacagaagccctcaagcaattccat 95  Q
    |||||||||||||||| |||| || |||||| ||||||||| |||||||| ||||||||||||| || ||||||| |||||||||||    
T  5524636 gaagaatattgcttgtcttgagatctctatgtatgattctttgtgtagaatcttgatgaagatatagcagccctcgagcaattccat 5524722  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 20342465 - 20342551
Alignment:
Q  9 gaagaatattgcttgttttgatatttctatgcatgattcttagtgtagaaccttgatgaagatacagaagccctcaagcaattccat 95  Q
    ||||||| |||||||| |||| || |||||| ||||||| |||||||||| ||||||| |||||||||||||| | |||||| ||||    
T  20342465 gaagaatgttgcttgtcttgagatctctatgtatgattcgtagtgtagaatcttgatggagatacagaagcccccgagcaataccat 20342551  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 5445146 - 5445234
Alignment:
Q  9 gaagaatattgcttgttttgatatttctatgcatgattcttagtgtagaaccttgatgaagatacagaagccctcaagcaattccatca 97  Q
    |||||||||||||||| |||| || |||||| |||||||||| ||||||| | ||||| |||||||| ||||| | |||||| ||||||    
T  5445146 gaagaatattgcttgtcttgagatctctatgaatgattcttaatgtagaatcctgatggagatacagcagcccccgagcaataccatca 5445234  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 5855363 - 5855275
Alignment:
Q  9 gaagaatattgcttgttttgatatttctatgcatgattcttagtgtagaaccttgatgaagatacagaagccctcaagcaattccatca 97  Q
    |||||||||||||||| |||| || |||||| || ||||||||||||||| ||||||| |||||||  ||||| | |||||| ||||||    
T  5855363 gaagaatattgcttgtcttgagatctctatgtattattcttagtgtagaatcttgatgcagatacaacagcccacgagcaatcccatca 5855275  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 5483475 - 5483556
Alignment:
Q  9 gaagaatattgcttgttttgatatttctatgcatgattcttagtgtagaaccttgatgaagatacagaagccctcaagcaat 90  Q
    |||||||||||||||| |||| || |||||| |||||||||| ||||||| | ||||| |||||||| ||||| | ||||||    
T  5483475 gaagaatattgcttgtcttgagatctctatgtatgattcttaatgtagaatcctgatggagatacagcagcccccgagcaat 5483556  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 5453729 - 5453794
Alignment:
Q  9 gaagaatattgcttgttttgatatttctatgcatgattcttagtgtagaaccttgatgaagataca 74  Q
    |||||||||||||||| |||| || |||||| |||||||||| ||||||| | ||||| |||||||    
T  5453729 gaagaatattgcttgtcttgagatctctatgaatgattcttaatgtagaatcctgatggagataca 5453794  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 5803784 - 5803712
Alignment:
Q  9 gaagaatattgcttgttttgatatttctatgcatgattcttagtgtagaaccttgatgaagatacagaagccc 81  Q
    |||| ||||||||||| |||| || |||||| |||||||||||||||||| | ||||| ||||| || |||||    
T  5803784 gaagtatattgcttgtcttgagatctctatgtatgattcttagtgtagaatcctgatgcagatatagcagccc 5803712  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 25810666 - 25810601
Alignment:
Q  9 gaagaatattgcttgttttgatatttctatgcatgattcttagtgtagaaccttgatgaagataca 74  Q
    |||||||||||||||| |||| || |||||| |||||||||| ||||||| | ||||| |||||||    
T  25810666 gaagaatattgcttgtcttgagatctctatgaatgattcttaatgtagaatcctgatggagataca 25810601  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 22689416 - 22689472
Alignment:
Q  35 ctatgcatgattcttagtgtagaaccttgatgaagatacagaagccctcaagcaatt 91  Q
    ||||| |||||||||| | ||||| ||||||||||||| ||||| |||| |||||||    
T  22689416 ctatgtatgattcttaatatagaatcttgatgaagataaagaagtcctcgagcaatt 22689472  T

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