View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7550_high_6 (Length: 706)
Name: NF7550_high_6
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7550_high_6 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 652; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 3 - 706
Target Start/End: Complemental strand, 16944190 - 16943482
Alignment:
| Q |
3 |
acttatttgggaaagttaccatacttccttggaatagaattcactgaaacctcaaagggattagtgatgcaccagaagaaatgcaaatgatattatcgag |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16944190 |
acttatttgggaaagttaccatacttccttggaatagaattcactgaaacctcaaagggattagtgatgcaccagaagaaatgcaaaatatattatcgag |
16944091 |
T |
|
| Q |
103 |
agattcaatatggtgagctgcaatcctgcttctactccggctaaagtaaatctgaaatttttgtataataaagatgaggagctagttgaccattgttcat |
202 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16944090 |
agattcaatatggtgagctgcattcctgcttctactccggctaaagtaaatctgaaatttttgtataataaagatgaggagctagttgaccattgttcat |
16943991 |
T |
|
| Q |
203 |
tgacaacaaatcagttattggcttggctaagaatctagtgttgcatggtagaaggaaacacatagagacaaggtttcactttatcagagagcaggtgaac |
302 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16943990 |
tgacaacaaatcagttattgacttggctaagaatctagtgttgcatggtagaagcaaacacatagagacaaggtttcactttatcagagagcaggtgaac |
16943891 |
T |
|
| Q |
303 |
aaggatgtgctgaaggttatccattgtccaaaagaagaacaaccagctgattttttaacaaaagttgtgaaagttgacagatttgtcaagttgagaagta |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16943890 |
aaggatgtgctgaaggttatccattgtccaaaagaagaacaaccagctgattttttaacaaaagttgtgaaagttgacagatttgtcaagttgagaagta |
16943791 |
T |
|
| Q |
403 |
tgattaaaatggtgaagtttgataacttaaattaagggaagatgttagttttaattcaagttagttgatatgataacttagttaagactggttgttaagt |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16943790 |
tgattaaaatggtgaagtttgataacttaaattaagggaagatgttagttttaattcaagttagttgatatgataacttagttaagactggttgttaagt |
16943691 |
T |
|
| Q |
503 |
ttgttagctattttagtcgaagttagctagttttcattgattacttgtataacaagtaactctcatatgttgcatatataaaaaccatgtaacctcacat |
602 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16943690 |
ttgttagctattttagtcgaagttagctagttttcgttgattacttgtataacaagtaactcccatatgttgcatatataaaaaccatgtaacctcacat |
16943591 |
T |
|
| Q |
603 |
tttcattgctaat----gagaat-acaagttacaatcacagtggactctctttttactctctcaattctctcttaaaatctgattgcttgatatgcaagc |
697 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16943590 |
tttcattgctaattaacgagaataacaagttacaatcacagtggactctcttttttctctctcaattctctcttaaaatctgattgcttgatatgcaagc |
16943491 |
T |
|
| Q |
698 |
tttctcgat |
706 |
Q |
| |
|
||||||||| |
|
|
| T |
16943490 |
tttctcgat |
16943482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 3 - 706
Target Start/End: Complemental strand, 17014855 - 17014147
Alignment:
| Q |
3 |
acttatttgggaaagttaccatacttccttggaatagaattcactgaaacctcaaagggattagtgatgcaccagaagaaatgcaaatgatattatcgag |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17014855 |
acttatttgggaaagttaccatacttccttggaatagaattcactgaaacctcaaagggattagtgatgcaccagaagaaatgcaaaatatattatcgag |
17014756 |
T |
|
| Q |
103 |
agattcaatatggtgagctgcaatcctgcttctactccggctaaagtaaatctgaaatttttgtataataaagatgaggagctagttgaccattgttcat |
202 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17014755 |
agattcaatatggtgagctgcattcctgcttctactccggctaaagtaaatctgaaatttttgtataataaagatgaggagctagttgaccattgttcat |
17014656 |
T |
|
| Q |
203 |
tgacaacaaatcagttattggcttggctaagaatctagtgttgcatggtagaaggaaacacatagagacaaggtttcactttatcagagagcaggtgaac |
302 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17014655 |
tgacaacaaatcagttattgacttggctaagaatctagtgttgcatggtagaagcaaacacatagagacaaggtttcactttatcagagagcaggtgaac |
17014556 |
T |
|
| Q |
303 |
aaggatgtgctgaaggttatccattgtccaaaagaagaacaaccagctgattttttaacaaaagttgtgaaagttgacagatttgtcaagttgagaagta |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17014555 |
aaggatgtgctgaaggttatccattgtccaaaagaagaacaaccagctgattttttaacaaaagttgtgaaagttgacagatttgtcaagttgagaagta |
17014456 |
T |
|
| Q |
403 |
tgattaaaatggtgaagtttgataacttaaattaagggaagatgttagttttaattcaagttagttgatatgataacttagttaagactggttgttaagt |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17014455 |
tgattaaaatggtgaagtttgataacttaaattaagggaagatgttagttttaattcaagttagttgatatgataacttagttaagactggttgttaagt |
17014356 |
T |
|
| Q |
503 |
ttgttagctattttagtcgaagttagctagttttcattgattacttgtataacaagtaactctcatatgttgcatatataaaaaccatgtaacctcacat |
602 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17014355 |
ttgttagctattttagtcgaagttagctagttttcgttgattacttgtataacaagtaactcccatatgttgcatatataaaaaccatgtaacctcacat |
17014256 |
T |
|
| Q |
603 |
tttcattgctaat----gagaat-acaagttacaatcacagtggactctctttttactctctcaattctctcttaaaatctgattgcttgatatgcaagc |
697 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17014255 |
tttcattgctaattaacgagaataacaagttacaatcacagtggactctcttttttctctctcaattctctcttaaaatctgattgcttgatatgcaagc |
17014156 |
T |
|
| Q |
698 |
tttctcgat |
706 |
Q |
| |
|
||||||||| |
|
|
| T |
17014155 |
tttctcgat |
17014147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 15489941 - 15489883
Alignment:
| Q |
228 |
gctaagaatctagtgttgcatggtagaaggaaacacatagagacaaggtttcactttat |
286 |
Q |
| |
|
||||||||| |||||||||||| ||||| |||||||| ||||||| ||||||||||| |
|
|
| T |
15489941 |
gctaagaattcagtgttgcatggaagaagcaaacacattgagacaatatttcactttat |
15489883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 239 - 466
Target Start/End: Complemental strand, 23428035 - 23427807
Alignment:
| Q |
239 |
agtgttgcatggtagaaggaaacacatagagacaaggtttcactttatcagagagcaggtgaacaaggatgtgctgaaggttatccattgtccaaaagaa |
338 |
Q |
| |
|
||||||||||| ||||| |||||||||||| ||| ||||||||||||||||| || ||||| || | |||| ||||| || |||||||| | || |
|
|
| T |
23428035 |
agtgttgcatgtcagaagtaaacacatagaggcaatatttcactttatcagagaacaagtgaataaataaatgcttaaggtcatacattgtcccattgag |
23427936 |
T |
|
| Q |
339 |
gaacaaccagctgattttttaacaaaagttgtgaaagttgacagatttgtcaagttgagaagtatgattaaaatggtgaagtttgataacttaaattaag |
438 |
Q |
| |
|
||||||| | ||||| | | ||||||| || || ||||||||||||||||||| ||| | |||||| |||||||||| | || ||||| ||||||| |
|
|
| T |
23427935 |
gaacaactatctgatgtgcttacaaaagatgaaaagattgacagatttgtcaagttaagatgcatgattggaatggtgaagctagagaacttgaattaag |
23427836 |
T |
|
| Q |
439 |
ggaagatgttag-ttttaattcaagttag |
466 |
Q |
| |
|
||| |||| ||| |||||||||||||||| |
|
|
| T |
23427835 |
ggaggatgctagtttttaattcaagttag |
23427807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 276 - 470
Target Start/End: Complemental strand, 17507377 - 17507182
Alignment:
| Q |
276 |
tttcactttatcagagagcaggtgaacaaggatgtgctgaaggttatccattgtccaaaagaagaacaaccagctgattttttaacaaaagttgtgaaag |
375 |
Q |
| |
|
||||||||||| ||||| || |||||||| || || | ||||| || |||||| ||| ||| ||||||| | ||||| |||||| ||| |||||| |
|
|
| T |
17507377 |
tttcactttattagagaacaagtgaacaaagaaatgtttaaggtcatacattgttcaatagaggaacaactaatggatttgttaacagaagctgtgaaga |
17507278 |
T |
|
| Q |
376 |
ttgacagatttgtcaagttgagaagtatgattaaaatggtgaagtttgataacttaaattaagggaagatgttagttt-taattcaagttagttga |
470 |
Q |
| |
|
|||||| ||||||||| | ||||| |||||| |||||||||| | | ||||| ||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
17507277 |
ttgacatatttgtcaaaataagaagcatgattggaatggtgaagctaaaaaacttgaattaagagagaatgttagtttataattcaagttagttga |
17507182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 1831655 - 1831732
Alignment:
| Q |
7 |
atttgggaaagttaccatacttccttggaatagaattcactgaaacctcaaagggattagtgatgcaccagaagaaat |
84 |
Q |
| |
|
|||||||||||||| |||| |||| |||||| ||||||||| |||| ||| | | |||||||||||||||||||||| |
|
|
| T |
1831655 |
atttgggaaagttaacatatttccctggaatggaattcactaaaacttcagaatgtttagtgatgcaccagaagaaat |
1831732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 302
Target Start/End: Original strand, 1833922 - 1833999
Alignment:
| Q |
225 |
ttggctaagaatctagtgttgcatggtagaaggaaacacatagagacaaggtttcactttatcagagagcaggtgaac |
302 |
Q |
| |
|
||||||||||||| ||||||||||| |||| |||||||| ||| |||| ||||||||||| ||||| || |||||| |
|
|
| T |
1833922 |
ttggctaagaatccagtgttgcatgaaagaaacaaacacattgaggcaagatttcactttataagagaacatgtgaac |
1833999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 9816969 - 9817045
Alignment:
| Q |
8 |
tttgggaaagttaccatacttccttggaatagaattcactgaaacctcaaagggattagtgatgcaccagaagaaat |
84 |
Q |
| |
|
|||||||| |||| |||| ||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9816969 |
tttgggaaggttaacatatttctttggaatagaattcactaaaacctcaaagggattagtgatgcactagaagaaat |
9817045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 410 - 466
Target Start/End: Complemental strand, 8855318 - 8855262
Alignment:
| Q |
410 |
aatggtgaagtttgataacttaaattaagggaagatgttagttttaattcaagttag |
466 |
Q |
| |
|
|||||||||||| || ||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
8855318 |
aatggtgaagttggaaaacttgaattaagggaggatgttagttttaattcaagttag |
8855262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 624
Target Start/End: Original strand, 3826491 - 3826584
Alignment:
| Q |
530 |
tagttttcattgattacttgtataacaagtaactctcatatgttgca-tatataaaaaccatgtaacctcac-attttcattgctaatgagaataca |
624 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||| ||||||| | | |||||||| |||| ||| |||| ||||||||||| |||||||||||| |
|
|
| T |
3826491 |
tagttttggttgattacttgtatagcaagtaactcacatatgtagtagtatataaa---catgcaacgtcacaattttcattgcgaatgagaataca |
3826584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 15565937 - 15565897
Alignment:
| Q |
12 |
ggaaagttaccatacttccttggaatagaattcactgaaac |
52 |
Q |
| |
|
||||||||| ||||||||||||| || |||||||||||||| |
|
|
| T |
15565937 |
ggaaagttaacatacttccttggtatggaattcactgaaac |
15565897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 376 - 561
Target Start/End: Original strand, 2207016 - 2207202
Alignment:
| Q |
376 |
ttgacagatttgtcaagttgagaagtatgattaaaatggtgaagtttgataacttaaattaagggaagatgttag-ttttaattcaagttagttgatatg |
474 |
Q |
| |
|
|||||| |||| |||| || |||||||||||| ||||||||| | || ||||| |||| ||||| |||| ||| ||||||||||||||||||| ||| |
|
|
| T |
2207016 |
ttgacatatttatcaaattaagaagtatgattggaatggtgaatgtagagaacttgaatttagggaggatggtaggttttaattcaagttagttgttata |
2207115 |
T |
|
| Q |
475 |
ataacttagttaagactggttgttaagtttgttagctattttagtcgaagttagctagttttcattgattacttgtataacaagtaa |
561 |
Q |
| |
|
|||| | |||| | || |||||||| |||||| ||| || || |||||||| ||||||| |||||||| | || |||||||| |
|
|
| T |
2207116 |
ataaagtgtttaaaattgtttgttaagcttgttaactacttctgtggaagttagttagttttggatgattactcgcatgacaagtaa |
2207202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 193 - 316
Target Start/End: Original strand, 28067018 - 28067135
Alignment:
| Q |
193 |
cattgttcattgacaacaaatcagttattggcttggctaagaatctagtgttgcatggtagaaggaaacacatagagacaaggtttcactttatcagaga |
292 |
Q |
| |
|
|||||||||||| |||||||||| ||||| ||||| ||||||| ||||||||||||| ||||||||||| |||| ||| | ||||||| ||| |
|
|
| T |
28067018 |
cattgttcattggcaacaaatcaactattgatttggccaagaatccagtgttgcatggt------aaacacatagaaacaatattttattttatcaaaga |
28067111 |
T |
|
| Q |
293 |
gcaggtgaacaaggatgtgctgaa |
316 |
Q |
| |
|
| | ||||||||||| ||||||| |
|
|
| T |
28067112 |
gaaagtgaacaaggaaatgctgaa |
28067135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 467
Target Start/End: Original strand, 25632708 - 25632749
Alignment:
| Q |
426 |
aacttaaattaagggaagatgttagttttaattcaagttagt |
467 |
Q |
| |
|
||||| |||||||| | ||||||||||||||||||||||||| |
|
|
| T |
25632708 |
aacttgaattaaggaaggatgttagttttaattcaagttagt |
25632749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 383 - 470
Target Start/End: Original strand, 24650715 - 24650803
Alignment:
| Q |
383 |
atttgtcaagttgagaagtatgattaaaatggtgaagtttgataacttaaattaagggaagatgttagtttt-aattcaagttagttga |
470 |
Q |
| |
|
|||||||||||| | |||||| ||| |||||||||| | || || | |||||||||| ||| |||||||| |||||||||||||||| |
|
|
| T |
24650715 |
atttgtcaagttaaaaagtataattggaatggtgaagctagaaaattggaattaagggaggatattagtttttaattcaagttagttga |
24650803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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