View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7550_high_7 (Length: 650)

Name: NF7550_high_7
Description: NF7550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7550_high_7
NF7550_high_7
[»] chr7 (7 HSPs)
chr7 (1-227)||(48893713-48893940)
chr7 (220-489)||(48893397-48893686)
chr7 (552-632)||(48893312-48893392)
chr7 (221-289)||(7747834-7747901)
chr7 (220-285)||(23410042-23410107)
chr7 (220-278)||(23688377-23688435)
chr7 (220-285)||(9953700-9953764)
[»] chr8 (7 HSPs)
chr8 (221-282)||(14663890-14663951)
chr8 (221-285)||(14641824-14641888)
chr8 (221-285)||(14666270-14666334)
chr8 (222-281)||(40455289-40455349)
chr8 (221-254)||(12104037-12104070)
chr8 (221-289)||(9330699-9330767)
chr8 (220-268)||(12071228-12071276)
[»] chr4 (2 HSPs)
chr4 (234-289)||(46670944-46670999)
chr4 (223-289)||(42515206-42515272)
[»] scaffold0434 (1 HSPs)
scaffold0434 (220-285)||(11530-11594)
[»] scaffold0007 (1 HSPs)
scaffold0007 (220-289)||(276006-276074)
[»] chr2 (3 HSPs)
chr2 (220-285)||(41363412-41363477)
chr2 (220-285)||(44679518-44679583)
chr2 (220-281)||(28634182-28634243)
[»] chr3 (1 HSPs)
chr3 (220-285)||(11773275-11773339)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 3e-99; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 48893940 - 48893713
Alignment:
Q  1 tgattccactactcaaacaaaaaa-ctagtaatttaataagagaattttgagagatgagaagtcacgtacagaaaaagaatttgagcaccttaatcgtat 99  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48893940 tgattccactactaaaacaaaaaaactagtaatttaataagagaattttgagagatgagaagtcacgtacagaaaaagaatttgagcaccttaatcgtat 48893841  T
Q  100 agtaacctaacagaaaaccgaaccatcagcacgcgtggatctattccttaaaatgttttttatggtcacttaacacacacttcctacaaatannnnnnnn 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  48893840 agtaacctaacagaaaaccgaaccatcagcacgcgtggatctattccttaaaatgttttttatggtcacttaacacacacttcctacaaatttttttttt 48893741  T
Q  200 caatgatattactataggaaaatttgtt 227  Q
    ||||||||||| ||||||||||||||||    
T  48893740 caatgatattattataggaaaatttgtt 48893713  T

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Target: chr7; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 220 - 489
Target Start/End: Complemental strand, 48893686 - 48893397
Alignment:
Q  220 aatttgttggataacaattatgaaaattaagcaaattaaaatcggtttgaactttataataataaaattgcgagttttactagatttccaacttgagctt 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  48893686 aatttgttggataacaattatgaaaattaagcaaattaaaatcggtttgaactttataataataaaattgcgagttttactagattcccaacttgagctt 48893587  T
Q  320 ctgatttgacaatgactattgaatcc-------ctctatcgaagta----------------aacaattagtgacaaaatcgttaattctaaaataatta 396  Q
    |||||||||||||||||| |||||||       |||||||||||||                |  | ||||||||||||||||||||||||||||||       
T  48893586 ctgatttgacaatgactactgaatccctctaccctctatcgaagtactactgaattctttaaattacttagtgacaaaatcgttaattctaaaataa--- 48893490  T
Q  397 gattgcttctgagtgtttatttccccagtaaacagtaatctatttgggttttttctaataggcttggcctgacttccttgggatcattagaaa 489  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48893489 gattgtttctgagtgtttatttccccagtaaacagtaatctatttgggttttttctaataggcttggcctgacttccttgggatcattagaaa 48893397  T

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Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 552 - 632
Target Start/End: Complemental strand, 48893392 - 48893312
Alignment:
Q  552 ggaacgaatcagaaatataatatagttaccggctatctgtcaattcaataaatcaatttaaaactcaacaaccaccattat 632  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48893392 ggaacgaatcagaaatataatatagttaccggctgtctgtcaattcaataaatcaatttaaaactcaacaaccaccattat 48893312  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 7747901 - 7747834
Alignment:
Q  221 atttgttggataacaattatgaaaattaagcaaattaaaatcggtttgaactttataataataaaattg 289  Q
    ||||||| |||| |||| ||||||||||||||||  ||||| |||||||||||||||||||||||||||    
T  7747901 atttgtttgatagcaataatgaaaattaagcaaaa-aaaattggtttgaactttataataataaaattg 7747834  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 220 - 285
Target Start/End: Complemental strand, 23410107 - 23410042
Alignment:
Q  220 aatttgttggataacaattatgaaaattaagcaaattaaaatcggtttgaactttataataataaa 285  Q
    |||||||| |||  |||| |||||||||||||||| |||| | |||||||||||||||||||||||    
T  23410107 aatttgtttgattgcaataatgaaaattaagcaaagtaaatttggtttgaactttataataataaa 23410042  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 220 - 278
Target Start/End: Original strand, 23688377 - 23688435
Alignment:
Q  220 aatttgttggataacaattatgaaaattaagcaaattaaaatcggtttgaactttataa 278  Q
    |||||||| |||  |||| |||||||||||||||| |||| | ||||||||||||||||    
T  23688377 aatttgtttgattgcaataatgaaaattaagcaaagtaaatttggtttgaactttataa 23688435  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 9953700 - 9953764
Alignment:
Q  220 aatttgttggataacaattatgaaaattaagcaaattaaaatcggtttgaactttataataataaa 285  Q
    |||||||| |||  |||| |||||||||||| ||| |||| | |||||||||||||||||||||||    
T  9953700 aatttgtttgattgcaataatgaaaattaagtaaagtaaatt-ggtttgaactttataataataaa 9953764  T

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Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 14663951 - 14663890
Alignment:
Q  221 atttgttggataacaattatgaaaattaagcaaattaaaatcggtttgaactttataataat 282  Q
    |||||||||||| ||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  14663951 atttgttggatatcaattatgaaaattaagcaaattaagattcgtttgaactttataataat 14663890  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 221 - 285
Target Start/End: Original strand, 14641824 - 14641888
Alignment:
Q  221 atttgttggataacaattatgaaaattaagcaaattaaaatcggtttgaactttataataataaa 285  Q
    ||||||||||||  |||||||||||| ||||||||||| ||   |||||||||||||||||||||    
T  14641824 atttgttggatattaattatgaaaatcaagcaaattaagattcatttgaactttataataataaa 14641888  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 285
Target Start/End: Original strand, 14666270 - 14666334
Alignment:
Q  221 atttgttggataacaattatgaaaattaagcaaattaaaatcggtttgaactttataataataaa 285  Q
    |||| ||||||| ||||||||||||||||| ||||||| ||  |||||||| ||| |||||||||    
T  14666270 atttattggatatcaattatgaaaattaaggaaattaagatttgtttgaacgttagaataataaa 14666334  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 281
Target Start/End: Complemental strand, 40455349 - 40455289
Alignment:
Q  222 tttgttggataacaattatgaaaattaagcaaattaaaatcg-gtttgaactttataataa 281  Q
    |||||| ||||||||| ||||||||||||||| ||||||| | |||||| |||||||||||    
T  40455349 tttgtttgataacaataatgaaaattaagcaatttaaaattgtgtttgacctttataataa 40455289  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 254
Target Start/End: Complemental strand, 12104070 - 12104037
Alignment:
Q  221 atttgttggataacaattatgaaaattaagcaaa 254  Q
    |||||||||||| |||||||||||||||||||||    
T  12104070 atttgttggatagcaattatgaaaattaagcaaa 12104037  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 9330767 - 9330699
Alignment:
Q  221 atttgttggataacaattatgaaaattaagcaaattaaaatcggtttgaactttataataataaaattg 289  Q
    ||||||| |||| |||| ||| ||||||| ||||  |||||  |||||||||||||||||| |||||||    
T  9330767 atttgtttgatagcaataatgtaaattaaacaaaagaaaatttgtttgaactttataataagaaaattg 9330699  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 12071228 - 12071276
Alignment:
Q  220 aatttgttggataacaattatgaaaattaagcaaattaaaatcggtttg 268  Q
    ||||||||||||  ||||||||| ||||||||||||||| || ||||||    
T  12071228 aatttgttggatggcaattatgacaattaagcaaattaagattggtttg 12071276  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 289
Target Start/End: Original strand, 46670944 - 46670999
Alignment:
Q  234 caattatgaaaattaagcaaattaaaatcggtttgaactttataataataaaattg 289  Q
    |||| |||||||||||||||| |||||| ||||||||||||||| |||||||||||    
T  46670944 caataatgaaaattaagcaaagtaaaattggtttgaactttatagtaataaaattg 46670999  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 42515206 - 42515272
Alignment:
Q  223 ttgttggataacaattatgaaaattaagcaaattaaaatcggtttgaactttataataataaaattg 289  Q
    ||||| |||| |||| |||||||||||| ||| |||||| |||||||||||| ||||||||||||||    
T  42515206 ttgtttgatagcaataatgaaaattaagaaaaataaaattggtttgaactttttaataataaaattg 42515272  T

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Target: scaffold0434 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 220 - 285
Target Start/End: Complemental strand, 11594 - 11530
Alignment:
Q  220 aatttgttggataacaattatgaaaattaagcaaattaaaatcggtttgaactttataataataaa 285  Q
    |||||||| |||  |||| ||||||||||||||||||||| | |||||||||||||||||||||||    
T  11594 aatttgtttgattgcaataatgaaaattaagcaaattaaatt-ggtttgaactttataataataaa 11530  T

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Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 276074 - 276006
Alignment:
Q  220 aatttgttggataacaattatgaaaattaagcaaattaaaatcggtttgaactttataataataaaattg 289  Q
    |||||||| |||  |||| |||||||||||||||| |||| | |||||||||||||||||||||||||||    
T  276074 aatttgtttgattgcaataatgaaaattaagcaaagtaaatt-ggtttgaactttataataataaaattg 276006  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 220 - 285
Target Start/End: Complemental strand, 41363477 - 41363412
Alignment:
Q  220 aatttgttggataacaattatgaaaattaagcaaattaaaatcggtttgaactttataataataaa 285  Q
    |||||||| |||  |||| |||||||||||||||| |||| | |||||||||||||||||||||||    
T  41363477 aatttgtttgattgcaataatgaaaattaagcaaagtaaatttggtttgaactttataataataaa 41363412  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 44679518 - 44679583
Alignment:
Q  220 aatttgttggataacaattatgaaaattaagcaaattaaaatcggtttgaactttataataataaa 285  Q
    |||||||| |||  |||| |||||||||||| ||| |||| | |||||||||||||||||||||||    
T  44679518 aatttgtttgattgcaataatgaaaattaagtaaagtaaatttggtttgaactttataataataaa 44679583  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 281
Target Start/End: Complemental strand, 28634243 - 28634182
Alignment:
Q  220 aatttgttggataacaattatgaaaattaagcaaattaaaatcggtttgaactttataataa 281  Q
    |||||||| |||  |||| |||||||||||||||| ||||   |||||||||||||||||||    
T  28634243 aatttgtttgattgcaataatgaaaattaagcaaaataaatctggtttgaactttataataa 28634182  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 11773275 - 11773339
Alignment:
Q  220 aatttgttggataacaattatgaaaattaagcaaattaaaatcggtttgaactttataataataaa 285  Q
    |||||||| |||  |||| |||||||||||||||| |||| | |||||||||||||||||||||||    
T  11773275 aatttgttcgattgcaataatgaaaattaagcaaagtaaatt-ggtttgaactttataataataaa 11773339  T

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